RchiOBHm_Chr3g0459601

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002960
Physical Location & Seq
Forward (+)
8006149 .. 8006337
189 bp
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UTR
Exon/CDS
Intron
PRQ42619

Sequence Viewer

Length: 189 bp
ATGAATGCTACTTTGCTACCACTCAGTGATCCGTCTCTTGAGCCTTTGCAGATCAATGTCTTTGACTATCTCCTAGGGCTTGCAGATTTGACTAGAAAGCTGATGCGGTTGGCAATTGGTCGAATTTCAGATGGTGAAGTTGAATTTGCTGAGGACATATGCAAGTTTATGCGTGAAAATTTACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

62

Amino Acids

7.04

Weight (kDa)

4.46

Isoelectric Point (pI)

28.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 8 - 59 5.4e-10 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 106
AclWI GGATC 1 cut(s) 23
AcsI RAATTY 3 cut(s) 123, 143, 178
AdeI CACNNNGTG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 1 cut(s) 23
ApoI RAATTY 3 cut(s) 123, 143, 178
AspA2I CCTAGG 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 146
AvrII CCTAGG 1 cut(s) 73
BbvCI CCTCAGC 1 cut(s) 150
BccI CCATC 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 2 cut(s) 74, 93
BlnI CCTAGG 1 cut(s) 73
BmsI GCATC 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 73
BseMII CTCAG 2 cut(s) 37, 141
BsmAI GTCTC 1 cut(s) 39
BsmBI CGTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 10
Bsp143I GATC 2 cut(s) 28, 51
BspACI CCGC 1 cut(s) 106
BspCNI CTCAG 2 cut(s) 36, 142
BspPI GGATC 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 2 cut(s) 28, 51
BssT1I CCWWGG 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 23, 150
BstKTI GATC 2 cut(s) 31, 54
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 2 cut(s) 28, 51
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 81
CviJI RGCY 3 cut(s) 43, 79, 100
CviKI_1 RGCY 3 cut(s) 43, 79, 100
DdeI CTNAG 2 cut(s) 23, 150
DpnI GATC 2 cut(s) 30, 53
DpnII GATC 2 cut(s) 28, 51
DraIII CACNNNGTG 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 39
FaiI YATR 3 cut(s) 158, 160, 170
FauNDI CATATG 1 cut(s) 158
FspBI CTAG 2 cut(s) 74, 93
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 38
HpyCH4V TGCA 3 cut(s) 49, 83, 162
HpyF3I CTNAG 2 cut(s) 23, 150
Kzo9I GATC 2 cut(s) 28, 51
LweI GCATC 1 cut(s) 93
MaeI CTAG 2 cut(s) 74, 93
MalI GATC 2 cut(s) 30, 53
MboI GATC 2 cut(s) 28, 51
MfeI CAATTG 1 cut(s) 114
MluCI AATT 4 cut(s) 114, 123, 143, 178
MnlI CCTC 1 cut(s) 145
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 10
NdeI CATATG 1 cut(s) 158
NdeII GATC 2 cut(s) 28, 51
PctI GAATGC 1 cut(s) 10
Sau3AI GATC 2 cut(s) 28, 51
SetI ASST 1 cut(s) 102
SfaNI GCATC 1 cut(s) 93
SgeI CNNG 6 cut(s) 50, 86, 92, 105, 175, 185
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 4 cut(s) 114, 123, 143, 178
SsiI CCGC 1 cut(s) 106
SspMI CTAG 2 cut(s) 74, 93
StyI CCWWGG 1 cut(s) 73
TaqI TCGA 1 cut(s) 121
TasI AATT 4 cut(s) 114, 123, 143, 178
TscAI CASTG 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 1 cut(s) 31
XapI RAATTY 3 cut(s) 123, 143, 178
XmaJI CCTAGG 1 cut(s) 73
XspI CTAG 2 cut(s) 74, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.