FvH4_4g29320

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002960
Physical Location & Seq
Forward (+)
29502825 .. 29505117
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g29320.t1

Sequence Viewer

Length: 747 bp
ATGGCCACCGAATCCTCCTCCTCCTCCATGAAAGACGCCTTCACCAAATACGCCGATTACCTCAACAACCAAAACGATAAACGCGAAAGAATCGTGAAAGCGAGCCGTGACATCACCATGAACAGCAAAAAGGTCATCTTCCAAGTTCACAGGATGAGCAAGCACAACAGGGAGGAGGTTCTGCAGAAAGCCGAAAAGGATTTGGCCTTCGTGACGGATCAGTTCGTGGCCCGGCTGGTTAAGGAGCTCCAAGGGACTGATTTCTGGAAGCTGCGACGAGCCTACTCGCCCGGGATACAGGAGTATGTTGAAGCTGCAACGTTCTGTAAGTTCTGCAGGTCCGGGGCGCTTTTGAATCTTGATGAGATGAATGCTACTTTGTTACCGCTCAGTGATCCGTCTCTGGAGCCTTTGCAGATCAATGTCCTTGATTATCTCCTAGGGCTTGCAGATTTGACTGGAGAGCTGATGCGGTTAGCAATCGGTCGAATTTCAGATGGTGAAGTTGAATTTGCTGAGAAGATATGCAAGTTTGTGCGTGAAATTTACAGGGAACTGACCGTAGTTGTGCCCTTTATGGATGATAGTAATGACATGAAGACGAAAATGGATACAATGCTTCAAAGTGTGATGAAGATTGAGAATGCTTGCTTCAGTGTTCATGTCAGAGGATCAGAGTATATGCCTCTACTTGGATCTGAGGATCCAACTTCCTTTTTATTAGGAGCGCCCAATGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

249

Amino Acids

28.19

Weight (kDa)

5.27

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 26 - 224 8e-58 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 327
AccBSI CCGCTC 1 cut(s) 388
AccII CGCG 1 cut(s) 84
AciI CCGC 2 cut(s) 386, 472
AclI AACGTT 1 cut(s) 320
AclWI GGATC 6 cut(s) 225, 389, 679, 698, 703, 711
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 489, 509, 543
AcuI CTGAAG 1 cut(s) 637
AcyI GRCGYC 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 692
AgsI TTSAA 4 cut(s) 311, 355, 509, 623
AluBI AGCT 4 cut(s) 247, 271, 314, 466
AluI AGCT 4 cut(s) 247, 271, 314, 466
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 405
AlwI GGATC 6 cut(s) 225, 389, 679, 698, 703, 711
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 3 cut(s) 3, 204, 228
ApeKI GCWGC 2 cut(s) 271, 314
ApoI RAATTY 3 cut(s) 489, 509, 543
AspA2I CCTAGG 1 cut(s) 439
AspLEI GCGC 2 cut(s) 349, 730
AspS9I GGNCC 2 cut(s) 229, 339
AsuC2I CCSGG 4 cut(s) 232, 291, 292, 343
AsuHPI GGTGA 3 cut(s) 34, 106, 512
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 1 cut(s) 339
AvrII CCTAGG 1 cut(s) 439
BaeGI GKGCMC 1 cut(s) 573
BaeI ACNNNNGTAYC 2 cut(s) 287, 320
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 703
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 605
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 258, 301
BccI CCATC 1 cut(s) 491
BceAI ACGGC 1 cut(s) 90
BciVI GTATCC 2 cut(s) 288, 604
BcnI CCSGG 4 cut(s) 232, 291, 292, 343
BcoDI GTCTC 1 cut(s) 405
BfaI CTAG 1 cut(s) 440
BfmI CTRYAG 2 cut(s) 182, 334
BfoI RGCGCY 2 cut(s) 350, 731
BfuAI ACCTGC 1 cut(s) 327
BfuI GTATCC 2 cut(s) 288, 604
BisI GCNGC 2 cut(s) 272, 315
BlnI CCTAGG 1 cut(s) 439
BlsI GCNGC 2 cut(s) 273, 316
Bme1390I CCNGG 4 cut(s) 232, 291, 292, 343
Bme18I GGWCC 1 cut(s) 339
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 229, 339
BmiI GGNNCC 2 cut(s) 408, 705
BmrFI CCNGG 4 cut(s) 232, 291, 292, 343
BmsI GCATC 1 cut(s) 459
BpiI GAAGAC 1 cut(s) 605
BpmI CTGGAG 2 cut(s) 425, 480
BpuMI CCSGG 4 cut(s) 232, 291, 292, 343
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 4 cut(s) 250, 290, 342, 439
Bsc4I CCNNNNNNNGG 1 cut(s) 692
Bse1I ACTGG 1 cut(s) 463
BseDI CCNNGG 4 cut(s) 250, 290, 342, 439
BseGI GGATG 2 cut(s) 159, 586
BseLI CCNNNNNNNGG 1 cut(s) 692
BseMII CTCAG 3 cut(s) 403, 507, 690
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 4 cut(s) 7, 10, 13, 188
BseSI GKGCMC 1 cut(s) 573
BseXI GCAGC 2 cut(s) 258, 301
Bsh1236I CGCG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 487
BshFI GGCC 3 cut(s) 5, 206, 230
BsiEI CGRYCG 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 3 cut(s) 232, 291, 342
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 692
BsmAI GTCTC 1 cut(s) 405
BsmBI CGTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 2 cut(s) 376, 649
BsnI GGCC 3 cut(s) 5, 206, 230
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 2 cut(s) 249, 573
Bsp143I GATC 6 cut(s) 217, 394, 417, 671, 695, 703
BspACI CCGC 2 cut(s) 386, 472
BspANI GGCC 3 cut(s) 5, 206, 230
BspCNI CTCAG 3 cut(s) 402, 508, 691
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 408, 705
BspMAI CTGCAG 2 cut(s) 186, 338
BspMI ACCTGC 1 cut(s) 327
BspPI GGATC 6 cut(s) 225, 389, 679, 698, 703, 711
BsrBI CCGCTC 1 cut(s) 388
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 4 cut(s) 250, 290, 342, 439
BssMI GATC 6 cut(s) 217, 394, 417, 671, 695, 703
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 2 cut(s) 250, 439
Bst4CI ACNGT 1 cut(s) 562
BstACI GRCGYC 1 cut(s) 36
BstC8I GCNNGC 4 cut(s) 103, 161, 447, 649
BstDEI CTNAG 3 cut(s) 389, 516, 699
BstF5I GGATG 2 cut(s) 159, 586
BstFNI CGCG 1 cut(s) 84
BstH2I RGCGCY 2 cut(s) 350, 731
BstHHI GCGC 2 cut(s) 349, 730
BstKTI GATC 6 cut(s) 220, 397, 420, 674, 698, 706
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 6 cut(s) 217, 394, 417, 671, 695, 703
BstMCI CGRYCG 1 cut(s) 487
BstSCI CCNGG 4 cut(s) 230, 289, 290, 341
BstSFI CTRYAG 2 cut(s) 182, 334
BstSLI GKGCMC 1 cut(s) 573
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 258, 301
BstV2I GAAGAC 1 cut(s) 605
BstX2I RGATCY 2 cut(s) 695, 703
BstYI RGATCY 2 cut(s) 695, 703
BsuI GTATCC 2 cut(s) 288, 604
BsuRI GGCC 3 cut(s) 5, 206, 230
BtsCI GGATG 2 cut(s) 159, 586
BtsIMutI CAGTG 2 cut(s) 397, 661
BveI ACCTGC 1 cut(s) 327
Cac8I GCNNGC 4 cut(s) 103, 161, 447, 649
CfoI GCGC 2 cut(s) 349, 730
Cfr13I GGNCC 2 cut(s) 229, 339
Cfr9I CCCGGG 1 cut(s) 290
CseI GACGC 1 cut(s) 44
CviAII CATG 4 cut(s) 28, 118, 595, 662
DdeI CTNAG 3 cut(s) 389, 516, 699
DpnI GATC 6 cut(s) 219, 396, 419, 673, 697, 705
DpnII GATC 6 cut(s) 217, 394, 417, 671, 695, 703
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 2 cut(s) 250, 439
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 339
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 637
Eco88I CYCGRG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 247
EcoT14I CCWWGG 2 cut(s) 250, 439
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 2 cut(s) 250, 439
Esp3I CGTCTC 1 cut(s) 405
FaeI CATG 4 cut(s) 31, 121, 598, 665
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 1 cut(s) 268
FatI CATG 4 cut(s) 27, 117, 594, 661
Fnu4HI GCNGC 2 cut(s) 272, 315
FokI GGATG 2 cut(s) 166, 593
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 272, 315
FspBI CTAG 1 cut(s) 440
GlaI GCGC 2 cut(s) 348, 729
GluI GCNGC 2 cut(s) 272, 315
GsuI CTGGAG 2 cut(s) 425, 480
HaeII RGCGCY 2 cut(s) 350, 731
HaeIII GGCC 3 cut(s) 5, 206, 230
HapII CCGG 3 cut(s) 232, 291, 342
HgaI GACGC 1 cut(s) 44
HhaI GCGC 2 cut(s) 349, 730
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 4 cut(s) 31, 121, 598, 665
Hin6I GCGC 2 cut(s) 347, 728
HinP1I GCGC 2 cut(s) 347, 728
HinfI GANTC 3 cut(s) 11, 90, 355
HpaII CCGG 3 cut(s) 232, 291, 342
HphI GGTGA 3 cut(s) 34, 106, 512
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 4 cut(s) 496, 668, 676, 700
Hpy188III TCNNGA 5 cut(s) 94, 211, 265, 359, 404
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 2 cut(s) 49, 217
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 6 cut(s) 184, 317, 336, 415, 449, 528
HpyF3I CTNAG 3 cut(s) 389, 516, 699
HpySE526I ACGT 1 cut(s) 320
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 4 cut(s) 31, 121, 598, 665
HspAI GCGC 2 cut(s) 347, 728
Kzo9I GATC 6 cut(s) 217, 394, 417, 671, 695, 703
LmnI GCTCC 4 cut(s) 244, 252, 406, 725
Lsp1109I GCAGC 2 cut(s) 258, 301
LweI GCATC 1 cut(s) 459
MaeI CTAG 1 cut(s) 440
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 3 cut(s) 107, 211, 381
MalI GATC 6 cut(s) 219, 396, 419, 673, 697, 705
MbiI CCGCTC 1 cut(s) 388
MboI GATC 6 cut(s) 217, 394, 417, 671, 695, 703
MboII GAAGA 4 cut(s) 130, 532, 610, 646
MflI RGATCY 2 cut(s) 695, 703
MhlI GDGCHC 2 cut(s) 249, 573
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 489, 509, 543
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 731
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 116
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 232, 291, 342
MspR9I CCNGG 4 cut(s) 232, 291, 292, 343
Mva1269I GAATGC 2 cut(s) 376, 649
MvnI CGCG 1 cut(s) 84
NciI CCSGG 4 cut(s) 232, 291, 292, 343
NdeII GATC 6 cut(s) 217, 394, 417, 671, 695, 703
NlaIII CATG 4 cut(s) 31, 121, 598, 665
NlaIV GGNNCC 2 cut(s) 408, 705
NmuCI GTSAC 2 cut(s) 107, 211
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 2 cut(s) 376, 649
PfeI GAWTC 3 cut(s) 11, 90, 355
PkrI GCNGC 2 cut(s) 273, 316
Psp124BI GAGCTC 1 cut(s) 249
Psp1406I AACGTT 1 cut(s) 320
PspN4I GGNNCC 2 cut(s) 408, 705
PspPI GGNCC 2 cut(s) 229, 339
PstI CTGCAG 2 cut(s) 186, 338
PsuI RGATCY 2 cut(s) 695, 703
RseI CAYNNNNRTG 1 cut(s) 116
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 2 cut(s) 272, 315
Sau3AI GATC 6 cut(s) 217, 394, 417, 671, 695, 703
Sau96I GGNCC 2 cut(s) 229, 339
ScrFI CCNGG 4 cut(s) 232, 291, 292, 343
SduI GDGCHC 2 cut(s) 249, 573
SetI ASST 9 cut(s) 63, 135, 180, 249, 273, 316, 323, 341, 468
SfaNI GCATC 1 cut(s) 459
SfcI CTRYAG 2 cut(s) 182, 334
SinI GGWCC 1 cut(s) 339
SmaI CCCGGG 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 116
Sse9I AATT 3 cut(s) 489, 509, 543
SsiI CCGC 2 cut(s) 386, 472
SspMI CTAG 1 cut(s) 440
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 4 cut(s) 230, 289, 290, 341
StyI CCWWGG 2 cut(s) 250, 439
TaaI ACNGT 1 cut(s) 562
TaiI ACGT 1 cut(s) 323
TaqI TCGA 1 cut(s) 487
TaqII GACCGA 1 cut(s) 473
TasI AATT 3 cut(s) 489, 509, 543
TfiI GAWTC 3 cut(s) 11, 90, 355
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 2 cut(s) 397, 661
TseFI GTSAC 2 cut(s) 107, 211
TseI GCWGC 2 cut(s) 271, 314
Tsp45I GTSAC 2 cut(s) 107, 211
TspDTI ATGAA 6 cut(s) 44, 134, 383, 611, 647, 650
TspGWI ACGGA 2 cut(s) 230, 387
TspMI CCCGGG 1 cut(s) 290
TspRI CASTG 2 cut(s) 397, 661
VpaK11BI GGWCC 1 cut(s) 339
XapI RAATTY 3 cut(s) 489, 509, 543
XmaI CCCGGG 1 cut(s) 290
XmaJI CCTAGG 1 cut(s) 439
XspI CTAG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.