Rw4G031160

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002960
Physical Location & Seq
Forward (+)
58012984 .. 58014472
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G031160.1

Sequence Viewer

Length: 786 bp
ATGTTGCAGCGCTACGCATTATTGCAGAGGATTTCAGTGATGGCTCTCAAACCCCACCGCCTCCATAACCTCGCCGATACGACGTCGCTTGGCGTAGCAAAGAGGCCAAGAACAATGGCCACCGATTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTATGAAAGACGCCTTCTCCCAGTACGCCGATTACCTCAATAACCAGCATAACAGAGAGGAGGTTCTGCAGAAAGCCGAAAAGGATTTAGCCGCCGTGACGGATTTGTTCGTGGCCCGGCTGGTTAAAGAGCTGCAAGGGACTGATTTTTGGAAGCTAAGAAGAGCATACTCGCCTGGGATACAAGAGTACGTTGAAGCTGCAACCTTCTGTAAATTCTGCAGGACCGGGACTCTTTTGAATCTTGATGAGATGAATGCTACATTGCTACCACTCAGCGATCCGTCTCTCGAGCCTTTGCAGATCAATGTCCTTGACTATCTCCTAGGGCTTGCAGATTTGACTGGAGAGCTGATGCGGTTGGCAATTGGTCGAATTTCAGATGGTGAAGTTGAATTTGCTGAGAACATATGCAAGTTTGTGCGTGAAATTTACAGGGAACTGACCCTAGTTGTCCCCTTTATGGATGATAGTAATGACATGAAGACGAAAATGGATACAATGCTTCAAAGTGTAATGAAGATAGAGAATGCTTGTTTCAGTGTTCATGTCAGAGGATCAGAGTATATGCCTCTACTTGGCTCCGAGGATCCAACTTCCTTTTTATTGGCAGTGCCCAGTGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

261

Amino Acids

29.31

Weight (kDa)

5.11

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 66 - 237 1.6e-47 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 86
AciI CCGC 3 cut(s) 58, 246, 511
AclWI GGATC 4 cut(s) 428, 718, 737, 750
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 4 cut(s) 368, 528, 548, 582
AcyI GRCGYC 2 cut(s) 83, 165
AfaI GTAC 2 cut(s) 179, 344
AfeI AGCGCT 1 cut(s) 11
AfiI CCNNNNNNNGG 2 cut(s) 616, 731
AgsI TTSAA 4 cut(s) 350, 394, 548, 662
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 4 cut(s) 286, 310, 353, 505
AluI AGCT 4 cut(s) 286, 310, 353, 505
Alw26I GTCTC 1 cut(s) 444
AlwI GGATC 4 cut(s) 428, 718, 737, 750
Ama87I CYCGRG 1 cut(s) 443
Aor51HI AGCGCT 1 cut(s) 11
AoxI GGCC 3 cut(s) 104, 117, 267
ApeKI GCWGC 3 cut(s) 7, 286, 353
ApoI RAATTY 4 cut(s) 368, 528, 548, 582
AspA2I CCTAGG 1 cut(s) 478
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 268, 378
AsuC2I CCSGG 2 cut(s) 271, 382
AsuHPI GGTGA 1 cut(s) 551
AvaI CYCGRG 1 cut(s) 443
AvaII GGWCC 1 cut(s) 378
AvrII CCTAGG 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 771
BaeI ACNNNNGTAYC 2 cut(s) 326, 359
BalI TGGCCA 1 cut(s) 119
BamHI GGATCC 1 cut(s) 742
BbsI GAAGAC 1 cut(s) 644
BbvI GCAGC 3 cut(s) 19, 273, 340
BccI CCATC 2 cut(s) 34, 530
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 330
BciVI GTATCC 2 cut(s) 327, 643
BcnI CCSGG 2 cut(s) 271, 382
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 2 cut(s) 479, 602
BfmI CTRYAG 2 cut(s) 221, 373
BfoI RGCGCY 1 cut(s) 13
BfuI GTATCC 2 cut(s) 327, 643
BisI GCNGC 4 cut(s) 8, 246, 287, 354
BlnI CCTAGG 1 cut(s) 478
BlsI GCNGC 4 cut(s) 9, 247, 288, 355
Bme1390I CCNGG 3 cut(s) 271, 330, 382
Bme18I GGWCC 1 cut(s) 378
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 2 cut(s) 268, 378
BmiI GGNNCC 2 cut(s) 736, 744
BmrFI CCNGG 3 cut(s) 271, 330, 382
BmrI ACTGGG 2 cut(s) 169, 765
BmsI GCATC 1 cut(s) 498
BmuI ACTGGG 2 cut(s) 169, 765
BpiI GAAGAC 1 cut(s) 644
BpmI CTGGAG 1 cut(s) 519
BpuMI CCSGG 2 cut(s) 271, 382
BsaHI GRCGYC 2 cut(s) 83, 165
BsaJI CCNNGG 3 cut(s) 329, 478, 738
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 616, 731
Bse1I ACTGG 3 cut(s) 175, 502, 771
Bse3DI GCAATG 1 cut(s) 416
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 3 cut(s) 329, 478, 738
BseGI GGATG 1 cut(s) 625
BseLI CCNNNNNNNGG 2 cut(s) 616, 731
BseMI GCAATG 1 cut(s) 416
BseMII CTCAG 2 cut(s) 442, 546
BseNI ACTGG 3 cut(s) 175, 502, 771
BseRI GAGGAG 9 cut(s) 121, 124, 127, 130, 133, 136, 139, 142, 227
BseSI GKGCMC 1 cut(s) 771
BseXI GCAGC 3 cut(s) 19, 273, 340
BshFI GGCC 3 cut(s) 106, 119, 269
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 2 cut(s) 271, 381
BslFI GGGAC 3 cut(s) 307, 397, 593
BslI CCNNNNNNNGG 2 cut(s) 616, 731
BsmAI GTCTC 1 cut(s) 444
BsmBI CGTCTC 1 cut(s) 444
BsmFI GGGAC 3 cut(s) 307, 397, 593
BsmI GAATGC 2 cut(s) 415, 688
BsnI GGCC 3 cut(s) 106, 119, 269
BsoBI CYCGRG 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 771
Bsp143I GATC 4 cut(s) 433, 456, 710, 742
BspACI CCGC 3 cut(s) 58, 246, 511
BspANI GGCC 3 cut(s) 106, 119, 269
BspCNI CTCAG 2 cut(s) 441, 547
BspLI GGNNCC 2 cut(s) 736, 744
BspMAI CTGCAG 2 cut(s) 225, 377
BspPI GGATC 4 cut(s) 428, 718, 737, 750
BspQI GCTCTTC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 416
BsrI ACTGG 3 cut(s) 175, 502, 771
BssECI CCNNGG 3 cut(s) 329, 478, 738
BssMI GATC 4 cut(s) 433, 456, 710, 742
BssNI GRCGYC 2 cut(s) 83, 165
BssT1I CCWWGG 1 cut(s) 478
Bst2UI CCWGG 1 cut(s) 330
Bst6I CTCTTC 1 cut(s) 310
BstACI GRCGYC 2 cut(s) 83, 165
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 3 cut(s) 311, 428, 555
BstF5I GGATG 1 cut(s) 625
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 4 cut(s) 436, 459, 713, 745
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 4 cut(s) 433, 456, 710, 742
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 3 cut(s) 269, 328, 380
BstSFI CTRYAG 2 cut(s) 221, 373
BstSLI GKGCMC 1 cut(s) 771
BstV1I GCAGC 3 cut(s) 19, 273, 340
BstV2I GAAGAC 1 cut(s) 644
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BsuI GTATCC 2 cut(s) 327, 643
BsuRI GGCC 3 cut(s) 106, 119, 269
BtsCI GGATG 1 cut(s) 625
BtsI GCAGTG 1 cut(s) 771
BtsIMutI CAGTG 4 cut(s) 42, 700, 771, 778
Cac8I GCNNGC 1 cut(s) 486
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 2 cut(s) 268, 378
CseI GACGC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 178, 343
CviAII CATG 2 cut(s) 634, 701
CviQI GTAC 2 cut(s) 178, 343
DdeI CTNAG 3 cut(s) 311, 428, 555
DpnI GATC 4 cut(s) 435, 458, 712, 744
DpnII GATC 4 cut(s) 433, 456, 710, 742
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 378
Eco47III AGCGCT 1 cut(s) 11
Eco88I CYCGRG 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 478
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 2 cut(s) 637, 704
FaqI GGGAC 3 cut(s) 307, 397, 593
FatI CATG 2 cut(s) 633, 700
FauNDI CATATG 1 cut(s) 563
Fnu4HI GCNGC 4 cut(s) 8, 246, 287, 354
FokI GGATG 1 cut(s) 632
Fsp4HI GCNGC 4 cut(s) 8, 246, 287, 354
FspBI CTAG 2 cut(s) 479, 602
GlaI GCGC 1 cut(s) 11
GluI GCNGC 4 cut(s) 8, 246, 287, 354
GsuI CTGGAG 1 cut(s) 519
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 3 cut(s) 106, 119, 269
HapII CCGG 2 cut(s) 271, 381
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 2 cut(s) 83, 165
Hin1II CATG 2 cut(s) 637, 704
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 3 cut(s) 125, 385, 394
HpaII CCGG 2 cut(s) 271, 381
HphI GGTGA 1 cut(s) 551
Hpy188I TCNGA 4 cut(s) 535, 707, 715, 739
Hpy188III TCNNGA 2 cut(s) 398, 443
Hpy99I CGWCG 2 cut(s) 85, 88
HpyAV CCTTC 2 cut(s) 178, 370
HpyCH4IV ACGT 2 cut(s) 83, 345
HpyCH4V TGCA 9 cut(s) 7, 25, 223, 289, 356, 375, 454, 488, 567
HpyF3I CTNAG 3 cut(s) 311, 428, 555
HpySE526I ACGT 2 cut(s) 83, 345
Hsp92I GRCGYC 2 cut(s) 83, 165
Hsp92II CATG 2 cut(s) 637, 704
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 4 cut(s) 433, 456, 710, 742
LguI GCTCTTC 1 cut(s) 310
LmnI GCTCC 1 cut(s) 740
Lsp1109I GCAGC 3 cut(s) 19, 273, 340
LweI GCATC 1 cut(s) 498
MaeI CTAG 2 cut(s) 479, 602
MaeII ACGT 2 cut(s) 83, 345
MaeIII GTNAC 1 cut(s) 250
MalI GATC 4 cut(s) 435, 458, 712, 744
MboI GATC 4 cut(s) 433, 456, 710, 742
MboII GAAGA 3 cut(s) 327, 649, 685
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 1 cut(s) 771
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 5 cut(s) 368, 519, 528, 548, 582
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 1 cut(s) 379
MmeI TCCRAC 1 cut(s) 770
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
MseI TTAA 1 cut(s) 279
Msp20I TGGCCA 1 cut(s) 119
MspI CCGG 2 cut(s) 271, 381
MspR9I CCNGG 3 cut(s) 271, 330, 382
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 2 cut(s) 415, 688
MvaI CCWGG 1 cut(s) 330
NciI CCSGG 2 cut(s) 271, 382
NdeI CATATG 1 cut(s) 563
NdeII GATC 4 cut(s) 433, 456, 710, 742
NlaIII CATG 2 cut(s) 637, 704
NlaIV GGNNCC 2 cut(s) 736, 744
NmuCI GTSAC 1 cut(s) 250
PaeR7I CTCGAG 1 cut(s) 443
PciSI GCTCTTC 1 cut(s) 310
PctI GAATGC 2 cut(s) 415, 688
PfeI GAWTC 2 cut(s) 125, 394
PkrI GCNGC 4 cut(s) 9, 247, 288, 355
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 2 cut(s) 736, 744
PspPI GGNCC 2 cut(s) 268, 378
PstI CTGCAG 2 cut(s) 225, 377
PsuI RGATCY 1 cut(s) 742
RsaI GTAC 2 cut(s) 179, 344
RsaNI GTAC 2 cut(s) 178, 343
SapI GCTCTTC 1 cut(s) 310
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 4 cut(s) 8, 246, 287, 354
Sau3AI GATC 4 cut(s) 433, 456, 710, 742
Sau96I GGNCC 2 cut(s) 268, 378
SchI GAGTC 1 cut(s) 379
ScrFI CCNGG 3 cut(s) 271, 330, 382
SduI GDGCHC 1 cut(s) 771
SfaNI GCATC 1 cut(s) 498
SfcI CTRYAG 2 cut(s) 221, 373
Sfr274I CTCGAG 1 cut(s) 443
SinI GGWCC 1 cut(s) 378
SlaI CTCGAG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 5 cut(s) 368, 519, 528, 548, 582
SsiI CCGC 3 cut(s) 58, 246, 511
SspMI CTAG 2 cut(s) 479, 602
StyD4I CCNGG 3 cut(s) 269, 328, 380
StyI CCWWGG 1 cut(s) 478
TaiI ACGT 2 cut(s) 86, 348
TaqI TCGA 2 cut(s) 444, 526
TasI AATT 5 cut(s) 368, 519, 528, 548, 582
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 2 cut(s) 125, 394
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 4 cut(s) 42, 700, 771, 778
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 3 cut(s) 7, 286, 353
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 5 cut(s) 173, 422, 650, 686, 689
TspGWI ACGGA 2 cut(s) 269, 426
TspRI CASTG 4 cut(s) 42, 700, 771, 778
VpaK11BI GGWCC 1 cut(s) 378
XapI RAATTY 4 cut(s) 368, 528, 548, 582
XhoI CTCGAG 1 cut(s) 443
XmaJI CCTAGG 1 cut(s) 478
XspI CTAG 2 cut(s) 479, 602
ZraI GACGTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.