Rh4BG365200

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002960
Physical Location & Seq
Forward (+)
52283328 .. 52284975
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG365200.1

Sequence Viewer

Length: 873 bp
ATGTTGCAGCGCTACGCATTATTGCAGAGGATTTCAGTGATGGCTCTCAAACCCCACCGCCTCCATAACCTCGCCGATACGACGTCGCTTGGCGTAGCAAAGAGGCCAAGAACAATGGCCGCCGAATCCTCCTCCTCCTCCTCCTCCTCCTCTATGAAAGACGCCTTCTCCCAATACGCCGATTACCTCAATAACCAAAATGATAAACGTGAAAGAATCGTCAAAGCGAGTCGGGATATCACCATGAACAGCAAAAAGGTCATCTTTCAAGTCCACAGAATGAGCAAGCATAACAGAGAGGAGGTTCTGCAGAAAGCCGAAAAGGATTTAGCCGCCGTGACGGATCAGTTGGTGGCCCGGCTGGTTAAAGAGCTGCAAGGGACTGATTTTTGGAAGCTAAGAAGAGCATACTCGCCTGGGATACAAGAGTACGTTGAAGCTGCAACCTTCTGTAAATTCTGCAGGACCGGGACTCTTTTGAATCTTGATGAGATGAATGCTACTTTGCTACCACTCAGCGATCCCTCTCTCGAGCCTTTGCAGATCAATGTCCTTGACTATCTCCTAGGGCTTGCAGATTTGACTGGAGAGCTGATGCGGTTGGCAATTGGTCGAATTTCAGATGGTGAAGTTGAATTTGCTGAGAACATATGCAAGTTTGTGCGTGAAATTTACAGGGAACTGACCCTAGTTGTCCCCTTTATGGATGATAGTAATGACATGAAGACGAAAATGGATACAATGCTTCAAAGTGTAATGAAGATAGAGAATGCTTGCTTCAGTGTTCATGTCAGAGGATCAGAGTATATGCCTCTACTTGGCTCCGAGGATCCAACTTCCTTTTTATTGGGAGTGCCCAGTGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

290

Amino Acids

32.77

Weight (kDa)

6.25

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 68 - 266 5.7e-59 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 86
AciI CCGC 4 cut(s) 58, 120, 333, 598
AclWI GGATC 5 cut(s) 351, 515, 805, 824, 837
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 4 cut(s) 455, 615, 635, 669
AcuI CTGAAG 1 cut(s) 763
AcyI GRCGYC 2 cut(s) 83, 162
AfaI GTAC 1 cut(s) 431
AfeI AGCGCT 1 cut(s) 11
AfiI CCNNNNNNNGG 2 cut(s) 703, 818
AgsI TTSAA 5 cut(s) 269, 437, 481, 635, 749
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 4 cut(s) 373, 397, 440, 592
AluI AGCT 4 cut(s) 373, 397, 440, 592
AlwI GGATC 5 cut(s) 351, 515, 805, 824, 837
Ama87I CYCGRG 1 cut(s) 530
Aor51HI AGCGCT 1 cut(s) 11
AoxI GGCC 3 cut(s) 104, 117, 354
ApeKI GCWGC 3 cut(s) 7, 373, 440
ApoI RAATTY 4 cut(s) 455, 615, 635, 669
AspA2I CCTAGG 1 cut(s) 565
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 355, 465
AsuC2I CCSGG 2 cut(s) 358, 469
AsuHPI GGTGA 2 cut(s) 232, 638
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 1 cut(s) 465
AvrII CCTAGG 1 cut(s) 565
BaeGI GKGCMC 1 cut(s) 858
BaeI ACNNNNGTAYC 2 cut(s) 413, 446
BamHI GGATCC 1 cut(s) 829
BbsI GAAGAC 1 cut(s) 731
BbvI GCAGC 3 cut(s) 19, 360, 427
BccI CCATC 2 cut(s) 34, 617
BceAI ACGGC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 417
BciVI GTATCC 2 cut(s) 414, 730
BcnI CCSGG 2 cut(s) 358, 469
BfaI CTAG 2 cut(s) 566, 689
BfmI CTRYAG 2 cut(s) 308, 460
BfoI RGCGCY 1 cut(s) 13
BfuI GTATCC 2 cut(s) 414, 730
BisI GCNGC 5 cut(s) 8, 120, 333, 374, 441
BlnI CCTAGG 1 cut(s) 565
BlsI GCNGC 5 cut(s) 9, 121, 334, 375, 442
Bme1390I CCNGG 3 cut(s) 358, 417, 469
Bme18I GGWCC 1 cut(s) 465
BmeT110I CYCGRG 1 cut(s) 530
BmgT120I GGNCC 2 cut(s) 355, 465
BmiI GGNNCC 2 cut(s) 823, 831
BmrFI CCNGG 3 cut(s) 358, 417, 469
BmrI ACTGGG 1 cut(s) 852
BmsI GCATC 1 cut(s) 585
BmuI ACTGGG 1 cut(s) 852
BpiI GAAGAC 1 cut(s) 731
BpmI CTGGAG 1 cut(s) 606
BpuMI CCSGG 2 cut(s) 358, 469
BsaHI GRCGYC 2 cut(s) 83, 162
BsaJI CCNNGG 3 cut(s) 416, 565, 825
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 703, 818
Bse1I ACTGG 2 cut(s) 589, 858
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 3 cut(s) 416, 565, 825
BseGI GGATG 1 cut(s) 712
BseLI CCNNNNNNNGG 2 cut(s) 703, 818
BseMII CTCAG 2 cut(s) 529, 633
BseNI ACTGG 2 cut(s) 589, 858
BseRI GAGGAG 8 cut(s) 121, 124, 127, 130, 133, 136, 139, 314
BseSI GKGCMC 1 cut(s) 858
BseXI GCAGC 3 cut(s) 19, 360, 427
BshFI GGCC 3 cut(s) 106, 119, 356
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 2 cut(s) 358, 468
BslFI GGGAC 3 cut(s) 394, 484, 680
BslI CCNNNNNNNGG 2 cut(s) 703, 818
BsmFI GGGAC 3 cut(s) 394, 484, 680
BsmI GAATGC 2 cut(s) 502, 775
BsnI GGCC 3 cut(s) 106, 119, 356
BsoBI CYCGRG 1 cut(s) 530
Bsp1286I GDGCHC 1 cut(s) 858
Bsp143I GATC 5 cut(s) 343, 520, 543, 797, 829
BspACI CCGC 4 cut(s) 58, 120, 333, 598
BspANI GGCC 3 cut(s) 106, 119, 356
BspCNI CTCAG 2 cut(s) 528, 634
BspLI GGNNCC 2 cut(s) 823, 831
BspMAI CTGCAG 2 cut(s) 312, 464
BspPI GGATC 5 cut(s) 351, 515, 805, 824, 837
BspQI GCTCTTC 1 cut(s) 397
BsrI ACTGG 2 cut(s) 589, 858
BssECI CCNNGG 3 cut(s) 416, 565, 825
BssMI GATC 5 cut(s) 343, 520, 543, 797, 829
BssNI GRCGYC 2 cut(s) 83, 162
BssT1I CCWWGG 1 cut(s) 565
Bst2UI CCWGG 1 cut(s) 417
Bst6I CTCTTC 1 cut(s) 397
BstACI GRCGYC 2 cut(s) 83, 162
BstC8I GCNNGC 3 cut(s) 287, 573, 775
BstDEI CTNAG 3 cut(s) 398, 515, 642
BstF5I GGATG 1 cut(s) 712
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 5 cut(s) 346, 523, 546, 800, 832
BstMBI GATC 5 cut(s) 343, 520, 543, 797, 829
BstNI CCWGG 1 cut(s) 417
BstSCI CCNGG 3 cut(s) 356, 415, 467
BstSFI CTRYAG 2 cut(s) 308, 460
BstSLI GKGCMC 1 cut(s) 858
BstV1I GCAGC 3 cut(s) 19, 360, 427
BstV2I GAAGAC 1 cut(s) 731
BstX2I RGATCY 1 cut(s) 829
BstYI RGATCY 1 cut(s) 829
BsuI GTATCC 2 cut(s) 414, 730
BsuRI GGCC 3 cut(s) 106, 119, 356
BtsCI GGATG 1 cut(s) 712
BtsIMutI CAGTG 3 cut(s) 42, 787, 865
Cac8I GCNNGC 3 cut(s) 287, 573, 775
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 2 cut(s) 355, 465
CseI GACGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 430
CviAII CATG 3 cut(s) 244, 721, 788
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 3 cut(s) 398, 515, 642
DpnI GATC 5 cut(s) 345, 522, 545, 799, 831
DpnII GATC 5 cut(s) 343, 520, 543, 797, 829
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 565
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 465
Eco47III AGCGCT 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 763
Eco88I CYCGRG 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 415
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 565
ErhI CCWWGG 1 cut(s) 565
FaeI CATG 3 cut(s) 247, 724, 791
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 3 cut(s) 394, 484, 680
FatI CATG 3 cut(s) 243, 720, 787
FauNDI CATATG 1 cut(s) 650
Fnu4HI GCNGC 5 cut(s) 8, 120, 333, 374, 441
FokI GGATG 1 cut(s) 719
Fsp4HI GCNGC 5 cut(s) 8, 120, 333, 374, 441
FspBI CTAG 2 cut(s) 566, 689
GlaI GCGC 1 cut(s) 11
GluI GCNGC 5 cut(s) 8, 120, 333, 374, 441
GsuI CTGGAG 1 cut(s) 606
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 3 cut(s) 106, 119, 356
HapII CCGG 2 cut(s) 358, 468
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 2 cut(s) 83, 162
Hin1II CATG 3 cut(s) 247, 724, 791
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 5 cut(s) 125, 216, 229, 472, 481
HpaII CCGG 2 cut(s) 358, 468
HphI GGTGA 2 cut(s) 232, 638
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 4 cut(s) 622, 794, 802, 826
Hpy188III TCNNGA 3 cut(s) 233, 485, 530
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 2 cut(s) 85, 88
HpyAV CCTTC 2 cut(s) 175, 457
HpyCH4IV ACGT 3 cut(s) 83, 208, 432
HpyCH4V TGCA 9 cut(s) 7, 25, 310, 376, 443, 462, 541, 575, 654
HpyF3I CTNAG 3 cut(s) 398, 515, 642
HpySE526I ACGT 3 cut(s) 83, 208, 432
Hsp92I GRCGYC 2 cut(s) 83, 162
Hsp92II CATG 3 cut(s) 247, 724, 791
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 5 cut(s) 343, 520, 543, 797, 829
LguI GCTCTTC 1 cut(s) 397
LmnI GCTCC 1 cut(s) 827
LpnPI CCDG 8 cut(s) 347, 371, 402, 429, 448, 481, 570, 661
Lsp1109I GCAGC 3 cut(s) 19, 360, 427
LweI GCATC 1 cut(s) 585
MaeI CTAG 2 cut(s) 566, 689
MaeII ACGT 3 cut(s) 83, 208, 432
MaeIII GTNAC 1 cut(s) 337
MalI GATC 5 cut(s) 345, 522, 545, 799, 831
MboI GATC 5 cut(s) 343, 520, 543, 797, 829
MboII GAAGA 3 cut(s) 414, 736, 772
MfeI CAATTG 1 cut(s) 606
MflI RGATCY 1 cut(s) 829
MhlI GDGCHC 1 cut(s) 858
MluCI AATT 5 cut(s) 455, 606, 615, 635, 669
MlyI GAGTC 2 cut(s) 238, 466
MmeI TCCRAC 1 cut(s) 857
MseI TTAA 1 cut(s) 366
MspI CCGG 2 cut(s) 358, 468
MspR9I CCNGG 3 cut(s) 358, 417, 469
MunI CAATTG 1 cut(s) 606
Mva1269I GAATGC 2 cut(s) 502, 775
MvaI CCWGG 1 cut(s) 417
NciI CCSGG 2 cut(s) 358, 469
NdeI CATATG 1 cut(s) 650
NdeII GATC 5 cut(s) 343, 520, 543, 797, 829
NlaIII CATG 3 cut(s) 247, 724, 791
NlaIV GGNNCC 2 cut(s) 823, 831
NmuCI GTSAC 1 cut(s) 337
PaeR7I CTCGAG 1 cut(s) 530
PciSI GCTCTTC 1 cut(s) 397
PctI GAATGC 2 cut(s) 502, 775
PfeI GAWTC 3 cut(s) 125, 216, 481
PkrI GCNGC 5 cut(s) 9, 121, 334, 375, 442
PleI GAGTC 2 cut(s) 237, 466
PpsI GAGTC 2 cut(s) 237, 466
Psp6I CCWGG 1 cut(s) 415
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 2 cut(s) 823, 831
PspPI GGNCC 2 cut(s) 355, 465
PstI CTGCAG 2 cut(s) 312, 464
PsuI RGATCY 1 cut(s) 829
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 397
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 5 cut(s) 8, 120, 333, 374, 441
Sau3AI GATC 5 cut(s) 343, 520, 543, 797, 829
Sau96I GGNCC 2 cut(s) 355, 465
SchI GAGTC 2 cut(s) 238, 466
ScrFI CCNGG 3 cut(s) 358, 417, 469
SduI GDGCHC 1 cut(s) 858
SfaNI GCATC 1 cut(s) 585
SfcI CTRYAG 2 cut(s) 308, 460
Sfr274I CTCGAG 1 cut(s) 530
SinI GGWCC 1 cut(s) 465
SlaI CTCGAG 1 cut(s) 530
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 5 cut(s) 455, 606, 615, 635, 669
SsiI CCGC 4 cut(s) 58, 120, 333, 598
SspMI CTAG 2 cut(s) 566, 689
StyD4I CCNGG 3 cut(s) 356, 415, 467
StyI CCWWGG 1 cut(s) 565
TaiI ACGT 3 cut(s) 86, 211, 435
TaqI TCGA 2 cut(s) 531, 613
TasI AATT 5 cut(s) 455, 606, 615, 635, 669
TauI GCSGC 2 cut(s) 122, 335
TfiI GAWTC 3 cut(s) 125, 216, 481
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 3 cut(s) 42, 787, 865
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 3 cut(s) 7, 373, 440
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 6 cut(s) 170, 260, 509, 737, 773, 776
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 3 cut(s) 42, 787, 865
VpaK11BI GGWCC 1 cut(s) 465
XapI RAATTY 4 cut(s) 455, 615, 635, 669
XhoI CTCGAG 1 cut(s) 530
XmaJI CCTAGG 1 cut(s) 565
XspI CTAG 2 cut(s) 566, 689
ZraI GACGTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.