Rroxscaffold_2G00092570

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002960
Physical Location & Seq
Reverse (-)
14132711 .. 14133577
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00092570.1

Sequence Viewer

Length: 381 bp
ATGAATGCTACTTTGCTACCACTCAGTGATCCGTCTCTTGAGCCTTTGCAGATCAATGGCCTTGACTATCTCCTAGGGATTGCAGATTTGACTGGAGAGCTGATGCGGTTGGCAATTGGTCGAATTTCAGATGCTGAAGTTGAATTTGCTGAGGACATATGCAAGTTTGTGCGTGAAATTTACAGGGAACTGACCCTAGTTGTCCCCTTTATGGATGATAGTAATGACATGAAGACGAAAATGGATACAATGCTTCAAAGTGTAATGAAGATAGAGAATGCTTGCTTCAGTGTTCATGTTAGAGAATCAGAGTATATGCCTCTACTTGGCTCCGAGGATCCAACTTCCTTTTTATTGGGAGTGCCCTGTGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

126

Amino Acids

14.11

Weight (kDa)

4.18

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 9 - 101 2.8e-24 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 106
AclWI GGATC 3 cut(s) 23, 332, 345
AcsI RAATTY 3 cut(s) 123, 143, 177
AcuI CTGAAG 2 cut(s) 156, 271
AdeI CACNNNGTG 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 211, 326
AgsI TTSAA 2 cut(s) 143, 257
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 3 cut(s) 23, 332, 345
AlwNI CAGNNNCTG 1 cut(s) 134
AoxI GGCC 1 cut(s) 58
ApoI RAATTY 3 cut(s) 123, 143, 177
AspA2I CCTAGG 1 cut(s) 73
AvrII CCTAGG 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 366
BamHI GGATCC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 239
BbvCI CCTCAGC 1 cut(s) 150
BciVI GTATCC 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 2 cut(s) 74, 197
BfuI GTATCC 1 cut(s) 238
BlnI CCTAGG 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 331, 339
BmsI GCATC 2 cut(s) 93, 121
BpiI GAAGAC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 114
Bpu10I CCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 73, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 326
Bse1I ACTGG 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 73, 333
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 2 cut(s) 211, 326
BseMII CTCAG 2 cut(s) 37, 141
BseNI ACTGG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 366
BshFI GGCC 1 cut(s) 60
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 211, 326
BsmAI GTCTC 1 cut(s) 39
BsmBI CGTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 188
BsmI GAATGC 2 cut(s) 10, 283
BsnI GGCC 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 3 cut(s) 28, 51, 337
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 36, 142
BspLI GGNNCC 2 cut(s) 331, 339
BspPI GGATC 3 cut(s) 23, 332, 345
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 73, 333
BssMI GATC 3 cut(s) 28, 51, 337
BssT1I CCWWGG 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 2 cut(s) 23, 150
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 3 cut(s) 31, 54, 340
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 3 cut(s) 28, 51, 337
BstSLI GKGCMC 1 cut(s) 366
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuI GTATCC 1 cut(s) 238
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 2 cut(s) 31, 295
Cac8I GCNNGC 1 cut(s) 283
CaiI CAGNNNCTG 1 cut(s) 134
CviAII CATG 2 cut(s) 229, 296
CviJI RGCY 4 cut(s) 43, 60, 100, 330
CviKI_1 RGCY 4 cut(s) 43, 60, 100, 330
DdeI CTNAG 2 cut(s) 23, 150
DpnI GATC 3 cut(s) 30, 53, 339
DpnII GATC 3 cut(s) 28, 51, 337
DraIII CACNNNGTG 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 73
Eco57I CTGAAG 2 cut(s) 156, 271
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 2 cut(s) 232, 299
FaiI YATR 9 cut(s) 158, 160, 212, 230, 297, 315, 317, 377, 379
FaqI GGGAC 1 cut(s) 188
FatI CATG 2 cut(s) 228, 295
FauNDI CATATG 1 cut(s) 158
FokI GGATG 1 cut(s) 227
FspBI CTAG 2 cut(s) 74, 197
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 1 cut(s) 60
Hin1II CATG 2 cut(s) 232, 299
HinfI GANTC 1 cut(s) 305
Hpy188I TCNGA 3 cut(s) 130, 310, 334
Hpy188III TCNNGA 1 cut(s) 38
HpyCH4V TGCA 3 cut(s) 49, 83, 162
HpyF3I CTNAG 2 cut(s) 23, 150
Hsp92II CATG 2 cut(s) 232, 299
Kzo9I GATC 3 cut(s) 28, 51, 337
LmnI GCTCC 1 cut(s) 335
LpnPI CCDG 2 cut(s) 78, 169
LweI GCATC 2 cut(s) 93, 121
MaeI CTAG 2 cut(s) 74, 197
MalI GATC 3 cut(s) 30, 53, 339
MboI GATC 3 cut(s) 28, 51, 337
MboII GAAGA 2 cut(s) 244, 280
MfeI CAATTG 1 cut(s) 114
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 4 cut(s) 114, 123, 143, 177
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 3 cut(s) 145, 328, 330
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 2 cut(s) 10, 283
NdeI CATATG 1 cut(s) 158
NdeII GATC 3 cut(s) 28, 51, 337
NlaIII CATG 2 cut(s) 232, 299
NlaIV GGNNCC 2 cut(s) 331, 339
PctI GAATGC 2 cut(s) 10, 283
PfeI GAWTC 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 331, 339
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 337
Sau3AI GATC 3 cut(s) 28, 51, 337
SduI GDGCHC 1 cut(s) 366
SetI ASST 1 cut(s) 102
SfaNI GCATC 2 cut(s) 93, 121
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 4 cut(s) 114, 123, 143, 177
SsiI CCGC 1 cut(s) 106
SspMI CTAG 2 cut(s) 74, 197
StyI CCWWGG 1 cut(s) 73
TaqI TCGA 1 cut(s) 121
TasI AATT 4 cut(s) 114, 123, 143, 177
TfiI GAWTC 1 cut(s) 305
TscAI CASTG 2 cut(s) 31, 295
TspDTI ATGAA 4 cut(s) 17, 245, 281, 284
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 2 cut(s) 31, 295
XapI RAATTY 3 cut(s) 123, 143, 177
XmaJI CCTAGG 1 cut(s) 73
XspI CTAG 2 cut(s) 74, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.