Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034128.1

Orthogroup ID

OG0002960

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 507

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034128.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 280 bp

atgaatgctacattgctaccactcagcgatccgtctcttgagcctttgcagatcaatgtccttgactatctcctagggcttgcagatttgactggagagctgatgcggttggcaattggtcgaatttcagatggtgaagttgaatttgctgagaacatatgcaagtttgtgcgtgaaatttacagggaactgaccctagttgtcccctttatggatgatagtaatgacatgaagacgaaaatggatacaatgcttcaaagtgtaatgaagatagagaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Translin

Protein Analysis

93

Amino Acids

10.54

Weight (kDa)

4.27

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03780 AT2G03780 AT2G03780
fragaria_vesca	FvH4_4g29320 FvH4_4g29320
malus_domestica	MD13G1056700.v1.1 MD16G1056000.v1.1
prunus_persica	Prupe.1G293300_v2.0.a1 Prupe.1G293300_v2.0.a1
pyrus_communis	pycom16g04880
rosa_chinensis	RchiOBHm_Chr3g0459601 RchiOBHm_Chr3g0459611 RchiOBHm_Chr4g0437361
rosa_laevigata	RLG00000006441
rosa_multiflora	Rmu_sc0004759.1_g000014 Rmu_sc0034128.1_g000001 Rmu_ssc0000087.1_g000062
rosa_roxburghii	Rroxscaffold_2G00092570 Rroxscaffold_5G00378550 Rroxscaffold_7G00174990
rosa_rugosa	Rorug01G0449100 Rorug04G0300700 Rorug04G0300800 Rorug04G0300800 Rorug04G0300900 Rorug04G0315600 Rorug05G0011200
rosa_samantha	Rh2BG219700 Rh3CG281200 Rh4BG365200 Rh4BG377800 Rh4CG379400 Rh4CG391900 Rh6BG022300 Rh6BG380600
rosa_wichuraiana	Rw3G022430 Rw4G031130 Rw4G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	3 cut(s)	123, 143, 177
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	143, 257
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	23
ApoI	RAATTY	3 cut(s)	123, 143, 177
AspA2I	CCTAGG	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	146
AvrII	CCTAGG	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	239
BccI	CCATC	1 cut(s)	125
BciVI	GTATCC	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	2 cut(s)	74, 197
BfuI	GTATCC	1 cut(s)	238
BlnI	CCTAGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	2 cut(s)	37, 141
BseNI	ACTGG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	39
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	28, 51
BspACI	CCGC	1 cut(s)	106
BspCNI	CTCAG	2 cut(s)	36, 142
BspPI	GGATC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	2 cut(s)	28, 51
BssT1I	CCWWGG	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	23, 150
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	2 cut(s)	31, 54
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	2 cut(s)	28, 51
BstV2I	GAAGAC	1 cut(s)	239
BsuI	GTATCC	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	81
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	3 cut(s)	43, 79, 100
CviKI_1	RGCY	3 cut(s)	43, 79, 100
DdeI	CTNAG	2 cut(s)	23, 150
DpnI	GATC	2 cut(s)	30, 53
DpnII	GATC	2 cut(s)	28, 51
Eco130I	CCWWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	1 cut(s)	232
FaiI	YATR	4 cut(s)	158, 160, 212, 230
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	1 cut(s)	228
FauNDI	CATATG	1 cut(s)	158
FokI	GGATG	1 cut(s)	227
FspBI	CTAG	2 cut(s)	74, 197
GsuI	CTGGAG	1 cut(s)	114
Hin1II	CATG	1 cut(s)	232
HphI	GGTGA	1 cut(s)	146
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	38
HpyCH4V	TGCA	3 cut(s)	49, 83, 162
HpyF3I	CTNAG	2 cut(s)	23, 150
Hsp92II	CATG	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	28, 51
LpnPI	CCDG	2 cut(s)	78, 169
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	2 cut(s)	74, 197
MalI	GATC	2 cut(s)	30, 53
MboI	GATC	2 cut(s)	28, 51
MboII	GAAGA	2 cut(s)	244, 280
MfeI	CAATTG	1 cut(s)	114
MluCI	AATT	4 cut(s)	114, 123, 143, 177
MunI	CAATTG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	10
NdeI	CATATG	1 cut(s)	158
NdeII	GATC	2 cut(s)	28, 51
NlaIII	CATG	1 cut(s)	232
PctI	GAATGC	1 cut(s)	10
Sau3AI	GATC	2 cut(s)	28, 51
SetI	ASST	1 cut(s)	102
SfaNI	GCATC	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	4 cut(s)	114, 123, 143, 177
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	2 cut(s)	74, 197
StyI	CCWWGG	1 cut(s)	73
TaqI	TCGA	1 cut(s)	121
TasI	AATT	4 cut(s)	114, 123, 143, 177
TspDTI	ATGAA	2 cut(s)	17, 245
TspGWI	ACGGA	1 cut(s)	21
XapI	RAATTY	3 cut(s)	123, 143, 177
XmaJI	CCTAGG	1 cut(s)	73
XspI	CTAG	2 cut(s)	74, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.