RchiOBHm_Chr4g0437361

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002960
Physical Location & Seq
Forward (+)
60483137 .. 60485225
2089 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40562

Sequence Viewer

Length: 861 bp
ATGTTGCAGCGCTACGCATTATTGCAGAGGATTTCAGTGATGGCTCTCAAACCCCACCGCCTCCATAACCTCGCCGATACGACGTCGCTTGGCGTAGCAAAGAGGCCAAGAACAATGGCCACCGAATCCTCCTCCTCCTCTATGAAAGACGCCTTCTCCCAGTACGCCGATTACCTCAATAACCAAAATGATAAACGTGAAAGAATCGTCAAAGCGAGTCGGGATATCACCATGAACAGCAAAAAGGTCATCTTTCAAGTCCACAGAATGAGCAAGCATAACAGAGAGGAGGTTCTGCAGAAAGCCGAAAAGGATTTAGCCGCCGTGACGGATCAGTTCGTGGCCCGGCTGGTTAAAGAGCTGCAAGGGACTGATTTTTGGAAGCTAAGAAGAGCATACTCGCCTGGGATACAAGAGTACGTTGAAGCTGCAACCTTCTGTAAATTCTGCAGGACCGGGACTCTTTTGAATCTTGATGAGATGAATGCTACATTGCTACCACTCAGCGATCCCTCTCTCGAGCCTTTGCAGATCAATGTCCTTGACTATCTCCTAGGGCTTGCAGATTTGACTGGAGAGCTGATGCGGTTGGCAATTGGTCGAATTTCAGATGGTGAAGTTGAATTTGCTGAGAACATATGCAAGTTTGTGCGTGAAATTTACAGGGAACTGACCCTAGTTGTCCCCTTTATGGATGATAGTAATGACATGAAGACGAAAATGGATACAATGCTTCAAAGTGTAATGAAGATAGAGAATGCTTGTTTCAGTGTTCATGTCAGAGGATCAGAGTATATGCCTCTACTTGGCTCCGAGGATCCAACTTCCTTTTTATTGGCAGTGCCCAGTGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

286

Amino Acids

32.5

Weight (kDa)

6.25

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 64 - 262 4.6e-59 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 86
AciI CCGC 3 cut(s) 58, 321, 586
AclWI GGATC 5 cut(s) 339, 503, 793, 812, 825
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 4 cut(s) 443, 603, 623, 657
AcyI GRCGYC 2 cut(s) 83, 150
AfaI GTAC 2 cut(s) 164, 419
AfeI AGCGCT 1 cut(s) 11
AfiI CCNNNNNNNGG 2 cut(s) 691, 806
AgsI TTSAA 5 cut(s) 257, 425, 469, 623, 737
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 4 cut(s) 361, 385, 428, 580
AluI AGCT 4 cut(s) 361, 385, 428, 580
AlwI GGATC 5 cut(s) 339, 503, 793, 812, 825
Ama87I CYCGRG 1 cut(s) 518
Aor51HI AGCGCT 1 cut(s) 11
AoxI GGCC 3 cut(s) 104, 117, 342
ApeKI GCWGC 3 cut(s) 7, 361, 428
ApoI RAATTY 4 cut(s) 443, 603, 623, 657
AspA2I CCTAGG 1 cut(s) 553
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 343, 453
AsuC2I CCSGG 2 cut(s) 346, 457
AsuHPI GGTGA 2 cut(s) 220, 626
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 1 cut(s) 453
AvrII CCTAGG 1 cut(s) 553
BaeGI GKGCMC 1 cut(s) 846
BaeI ACNNNNGTAYC 2 cut(s) 401, 434
BalI TGGCCA 1 cut(s) 119
BamHI GGATCC 1 cut(s) 817
BbsI GAAGAC 1 cut(s) 719
BbvI GCAGC 3 cut(s) 19, 348, 415
BccI CCATC 2 cut(s) 34, 605
BceAI ACGGC 1 cut(s) 308
BciT130I CCWGG 1 cut(s) 405
BciVI GTATCC 2 cut(s) 402, 718
BcnI CCSGG 2 cut(s) 346, 457
BfaI CTAG 2 cut(s) 554, 677
BfmI CTRYAG 2 cut(s) 296, 448
BfoI RGCGCY 1 cut(s) 13
BfuI GTATCC 2 cut(s) 402, 718
BisI GCNGC 4 cut(s) 8, 321, 362, 429
BlnI CCTAGG 1 cut(s) 553
BlsI GCNGC 4 cut(s) 9, 322, 363, 430
Bme1390I CCNGG 3 cut(s) 346, 405, 457
Bme18I GGWCC 1 cut(s) 453
BmeT110I CYCGRG 1 cut(s) 518
BmgT120I GGNCC 2 cut(s) 343, 453
BmiI GGNNCC 2 cut(s) 811, 819
BmrFI CCNGG 3 cut(s) 346, 405, 457
BmrI ACTGGG 2 cut(s) 154, 840
BmsI GCATC 1 cut(s) 573
BmuI ACTGGG 2 cut(s) 154, 840
BpiI GAAGAC 1 cut(s) 719
BpmI CTGGAG 1 cut(s) 594
BpuMI CCSGG 2 cut(s) 346, 457
BsaHI GRCGYC 2 cut(s) 83, 150
BsaJI CCNNGG 3 cut(s) 404, 553, 813
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 2 cut(s) 691, 806
Bse1I ACTGG 3 cut(s) 160, 577, 846
Bse3DI GCAATG 1 cut(s) 491
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 3 cut(s) 404, 553, 813
BseGI GGATG 1 cut(s) 700
BseLI CCNNNNNNNGG 2 cut(s) 691, 806
BseMI GCAATG 1 cut(s) 491
BseMII CTCAG 2 cut(s) 517, 621
BseNI ACTGG 3 cut(s) 160, 577, 846
BseRI GAGGAG 4 cut(s) 121, 124, 127, 302
BseSI GKGCMC 1 cut(s) 846
BseXI GCAGC 3 cut(s) 19, 348, 415
BshFI GGCC 3 cut(s) 106, 119, 344
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 2 cut(s) 346, 456
BslFI GGGAC 3 cut(s) 382, 472, 668
BslI CCNNNNNNNGG 2 cut(s) 691, 806
BsmFI GGGAC 3 cut(s) 382, 472, 668
BsmI GAATGC 2 cut(s) 490, 763
BsnI GGCC 3 cut(s) 106, 119, 344
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 846
Bsp143I GATC 5 cut(s) 331, 508, 531, 785, 817
BspACI CCGC 3 cut(s) 58, 321, 586
BspANI GGCC 3 cut(s) 106, 119, 344
BspCNI CTCAG 2 cut(s) 516, 622
BspLI GGNNCC 2 cut(s) 811, 819
BspMAI CTGCAG 2 cut(s) 300, 452
BspPI GGATC 5 cut(s) 339, 503, 793, 812, 825
BspQI GCTCTTC 1 cut(s) 385
BsrDI GCAATG 1 cut(s) 491
BsrI ACTGG 3 cut(s) 160, 577, 846
BssECI CCNNGG 3 cut(s) 404, 553, 813
BssMI GATC 5 cut(s) 331, 508, 531, 785, 817
BssNI GRCGYC 2 cut(s) 83, 150
BssT1I CCWWGG 1 cut(s) 553
Bst2UI CCWGG 1 cut(s) 405
Bst6I CTCTTC 1 cut(s) 385
BstACI GRCGYC 2 cut(s) 83, 150
BstC8I GCNNGC 2 cut(s) 275, 561
BstDEI CTNAG 3 cut(s) 386, 503, 630
BstF5I GGATG 1 cut(s) 700
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 5 cut(s) 334, 511, 534, 788, 820
BstMBI GATC 5 cut(s) 331, 508, 531, 785, 817
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 3 cut(s) 344, 403, 455
BstSFI CTRYAG 2 cut(s) 296, 448
BstSLI GKGCMC 1 cut(s) 846
BstV1I GCAGC 3 cut(s) 19, 348, 415
BstV2I GAAGAC 1 cut(s) 719
BstX2I RGATCY 1 cut(s) 817
BstYI RGATCY 1 cut(s) 817
BsuI GTATCC 2 cut(s) 402, 718
BsuRI GGCC 3 cut(s) 106, 119, 344
BtsCI GGATG 1 cut(s) 700
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 4 cut(s) 42, 775, 846, 853
Cac8I GCNNGC 2 cut(s) 275, 561
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 2 cut(s) 343, 453
CseI GACGC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 163, 418
CviAII CATG 3 cut(s) 232, 709, 776
CviQI GTAC 2 cut(s) 163, 418
DdeI CTNAG 3 cut(s) 386, 503, 630
DpnI GATC 5 cut(s) 333, 510, 533, 787, 819
DpnII GATC 5 cut(s) 331, 508, 531, 785, 817
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 385
EarI CTCTTC 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 553
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 453
Eco47III AGCGCT 1 cut(s) 11
Eco88I CYCGRG 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 403
EcoRV GATATC 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 553
FaeI CATG 3 cut(s) 235, 712, 779
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 3 cut(s) 382, 472, 668
FatI CATG 3 cut(s) 231, 708, 775
FauNDI CATATG 1 cut(s) 638
Fnu4HI GCNGC 4 cut(s) 8, 321, 362, 429
FokI GGATG 1 cut(s) 707
Fsp4HI GCNGC 4 cut(s) 8, 321, 362, 429
FspBI CTAG 2 cut(s) 554, 677
GlaI GCGC 1 cut(s) 11
GluI GCNGC 4 cut(s) 8, 321, 362, 429
GsuI CTGGAG 1 cut(s) 594
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 3 cut(s) 106, 119, 344
HapII CCGG 2 cut(s) 346, 456
HgaI GACGC 1 cut(s) 158
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 2 cut(s) 83, 150
Hin1II CATG 3 cut(s) 235, 712, 779
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 5 cut(s) 125, 204, 217, 460, 469
HpaII CCGG 2 cut(s) 346, 456
HphI GGTGA 2 cut(s) 220, 626
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 4 cut(s) 610, 782, 790, 814
Hpy188III TCNNGA 3 cut(s) 221, 473, 518
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 2 cut(s) 85, 88
HpyAV CCTTC 2 cut(s) 163, 445
HpyCH4IV ACGT 3 cut(s) 83, 196, 420
HpyCH4V TGCA 9 cut(s) 7, 25, 298, 364, 431, 450, 529, 563, 642
HpyF3I CTNAG 3 cut(s) 386, 503, 630
HpySE526I ACGT 3 cut(s) 83, 196, 420
Hsp92I GRCGYC 2 cut(s) 83, 150
Hsp92II CATG 3 cut(s) 235, 712, 779
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 5 cut(s) 331, 508, 531, 785, 817
LguI GCTCTTC 1 cut(s) 385
LmnI GCTCC 1 cut(s) 815
LpnPI CCDG 9 cut(s) 173, 335, 359, 390, 417, 436, 469, 558, 649
Lsp1109I GCAGC 3 cut(s) 19, 348, 415
LweI GCATC 1 cut(s) 573
MaeI CTAG 2 cut(s) 554, 677
MaeII ACGT 3 cut(s) 83, 196, 420
MaeIII GTNAC 1 cut(s) 325
MalI GATC 5 cut(s) 333, 510, 533, 787, 819
MboI GATC 5 cut(s) 331, 508, 531, 785, 817
MboII GAAGA 3 cut(s) 402, 724, 760
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 1 cut(s) 817
MhlI GDGCHC 1 cut(s) 846
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 5 cut(s) 443, 594, 603, 623, 657
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 2 cut(s) 226, 454
MmeI TCCRAC 1 cut(s) 845
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
MseI TTAA 1 cut(s) 354
Msp20I TGGCCA 1 cut(s) 119
MspI CCGG 2 cut(s) 346, 456
MspR9I CCNGG 3 cut(s) 346, 405, 457
MunI CAATTG 1 cut(s) 594
Mva1269I GAATGC 2 cut(s) 490, 763
MvaI CCWGG 1 cut(s) 405
NciI CCSGG 2 cut(s) 346, 457
NdeI CATATG 1 cut(s) 638
NdeII GATC 5 cut(s) 331, 508, 531, 785, 817
NlaIII CATG 3 cut(s) 235, 712, 779
NlaIV GGNNCC 2 cut(s) 811, 819
NmuCI GTSAC 1 cut(s) 325
PaeR7I CTCGAG 1 cut(s) 518
PciSI GCTCTTC 1 cut(s) 385
PctI GAATGC 2 cut(s) 490, 763
PfeI GAWTC 3 cut(s) 125, 204, 469
PkrI GCNGC 4 cut(s) 9, 322, 363, 430
PleI GAGTC 2 cut(s) 225, 454
PpsI GAGTC 2 cut(s) 225, 454
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 2 cut(s) 811, 819
PspPI GGNCC 2 cut(s) 343, 453
PstI CTGCAG 2 cut(s) 300, 452
PsuI RGATCY 1 cut(s) 817
RsaI GTAC 2 cut(s) 164, 419
RsaNI GTAC 2 cut(s) 163, 418
SapI GCTCTTC 1 cut(s) 385
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 4 cut(s) 8, 321, 362, 429
Sau3AI GATC 5 cut(s) 331, 508, 531, 785, 817
Sau96I GGNCC 2 cut(s) 343, 453
SchI GAGTC 2 cut(s) 226, 454
ScrFI CCNGG 3 cut(s) 346, 405, 457
SduI GDGCHC 1 cut(s) 846
SfaNI GCATC 1 cut(s) 573
SfcI CTRYAG 2 cut(s) 296, 448
Sfr274I CTCGAG 1 cut(s) 518
SinI GGWCC 1 cut(s) 453
SlaI CTCGAG 1 cut(s) 518
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 5 cut(s) 443, 594, 603, 623, 657
SsiI CCGC 3 cut(s) 58, 321, 586
SspMI CTAG 2 cut(s) 554, 677
StyD4I CCNGG 3 cut(s) 344, 403, 455
StyI CCWWGG 1 cut(s) 553
TaiI ACGT 3 cut(s) 86, 199, 423
TaqI TCGA 2 cut(s) 519, 601
TasI AATT 5 cut(s) 443, 594, 603, 623, 657
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 3 cut(s) 125, 204, 469
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 4 cut(s) 42, 775, 846, 853
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 3 cut(s) 7, 361, 428
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 6 cut(s) 158, 248, 497, 725, 761, 764
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 4 cut(s) 42, 775, 846, 853
VpaK11BI GGWCC 1 cut(s) 453
XapI RAATTY 4 cut(s) 443, 603, 623, 657
XhoI CTCGAG 1 cut(s) 518
XmaJI CCTAGG 1 cut(s) 553
XspI CTAG 2 cut(s) 554, 677
ZraI GACGTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.