Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004759.1

Orthogroup ID

OG0002960

Physical Location & Seq

Genomic Coordinates Reverse (-)

51083 .. 52159

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004759.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgagcaagcacaacagagaggaggttctgcagaaagccgaaaaggatttagccgccgtgacggatctgttcgtggcccggctggttaaagagctgcaagggactgatttttggaagctaagaagagcatactcgcctgggatacaagagtacgttgaagctgcaaccttctgtaaattctgcaggaccgggactcttttgaatcttgatgagatgaatgctacattgctaccactcagcgatccgtctctcgagcctttgcagatcaatgtccttgactatctcctagggcttgcagatttgactggagagctgatgcggttggcaattggtcgaatttcagatggtgaagttgaatttgctgagaacatatgcaagtttgtgcgtgaaatttacagggaactgaccctagttgtcccctttatggatgatagtaatgacatgaagacgaaaatggaaacaatgcttcaaagtgtaatgaagatagagaatgcttgtttcagtgttcatgtcagaggatcagagtatatgcctctacttggctccgaggatccaacttcctttttattggcagtgcccagtgttgatatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Translin

Protein Analysis

197

Amino Acids

22.25

Weight (kDa)

4.69

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03780 AT2G03780 AT2G03780
fragaria_vesca	FvH4_4g29320 FvH4_4g29320
malus_domestica	MD13G1056700.v1.1 MD16G1056000.v1.1
prunus_persica	Prupe.1G293300_v2.0.a1 Prupe.1G293300_v2.0.a1
pyrus_communis	pycom16g04880
rosa_chinensis	RchiOBHm_Chr3g0459601 RchiOBHm_Chr3g0459611 RchiOBHm_Chr4g0437361
rosa_laevigata	RLG00000006441
rosa_multiflora	Rmu_sc0004759.1_g000014 Rmu_sc0034128.1_g000001 Rmu_ssc0000087.1_g000062
rosa_roxburghii	Rroxscaffold_2G00092570 Rroxscaffold_5G00378550 Rroxscaffold_7G00174990
rosa_rugosa	Rorug01G0449100 Rorug04G0300700 Rorug04G0300800 Rorug04G0300800 Rorug04G0300900 Rorug04G0315600 Rorug05G0011200
rosa_samantha	Rh2BG219700 Rh3CG281200 Rh4BG365200 Rh4BG377800 Rh4CG379400 Rh4CG391900 Rh6BG022300 Rh6BG380600
rosa_wichuraiana	Rw3G022430 Rw4G031130 Rw4G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	54, 319
AclWI	GGATC	5 cut(s)	72, 236, 526, 545, 558
AcsI	RAATTY	4 cut(s)	176, 336, 356, 390
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	424, 539
AgsI	TTSAA	4 cut(s)	158, 202, 356, 470
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	4 cut(s)	94, 118, 161, 313
AluI	AGCT	4 cut(s)	94, 118, 161, 313
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	5 cut(s)	72, 236, 526, 545, 558
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	94, 161
ApoI	RAATTY	4 cut(s)	176, 336, 356, 390
AspA2I	CCTAGG	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	76, 186
AsuC2I	CCSGG	2 cut(s)	79, 190
AsuHPI	GGTGA	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	186
AvrII	CCTAGG	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	579
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BamHI	GGATCC	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	81, 148
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	138
BciVI	GTATCC	1 cut(s)	135
BcnI	CCSGG	2 cut(s)	79, 190
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	2 cut(s)	287, 410
BfmI	CTRYAG	2 cut(s)	29, 181
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	3 cut(s)	54, 95, 162
BlnI	CCTAGG	1 cut(s)	286
BlsI	GCNGC	3 cut(s)	55, 96, 163
Bme1390I	CCNGG	3 cut(s)	79, 138, 190
Bme18I	GGWCC	1 cut(s)	186
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	76, 186
BmiI	GGNNCC	2 cut(s)	544, 552
BmrFI	CCNGG	3 cut(s)	79, 138, 190
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	452
BpmI	CTGGAG	1 cut(s)	327
BpuMI	CCSGG	2 cut(s)	79, 190
BsaJI	CCNNGG	3 cut(s)	137, 286, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 539
Bse1I	ACTGG	2 cut(s)	310, 579
Bse3DI	GCAATG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	3 cut(s)	137, 286, 546
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	2 cut(s)	424, 539
BseMI	GCAATG	1 cut(s)	224
BseMII	CTCAG	2 cut(s)	250, 354
BseNI	ACTGG	2 cut(s)	310, 579
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	579
BseXI	GCAGC	2 cut(s)	81, 148
BshFI	GGCC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	79, 189
BslFI	GGGAC	3 cut(s)	115, 205, 401
BslI	CCNNNNNNNGG	2 cut(s)	424, 539
BsmAI	GTCTC	1 cut(s)	252
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	3 cut(s)	115, 205, 401
BsmI	GAATGC	2 cut(s)	223, 496
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	5 cut(s)	64, 241, 264, 518, 550
BspACI	CCGC	2 cut(s)	54, 319
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	2 cut(s)	249, 355
BspLI	GGNNCC	2 cut(s)	544, 552
BspMAI	CTGCAG	2 cut(s)	33, 185
BspPI	GGATC	5 cut(s)	72, 236, 526, 545, 558
BspQI	GCTCTTC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	310, 579
BssECI	CCNNGG	3 cut(s)	137, 286, 546
BssMI	GATC	5 cut(s)	64, 241, 264, 518, 550
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	8, 294
BstDEI	CTNAG	3 cut(s)	119, 236, 363
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	5 cut(s)	67, 244, 267, 521, 553
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	5 cut(s)	64, 241, 264, 518, 550
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	3 cut(s)	77, 136, 188
BstSFI	CTRYAG	2 cut(s)	29, 181
BstSLI	GKGCMC	1 cut(s)	579
BstV1I	GCAGC	2 cut(s)	81, 148
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	2 cut(s)	64, 550
BstYI	RGATCY	2 cut(s)	64, 550
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	433
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	3 cut(s)	508, 579, 586
Cac8I	GCNNGC	2 cut(s)	8, 294
Cfr13I	GGNCC	2 cut(s)	76, 186
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	2 cut(s)	442, 509
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	3 cut(s)	119, 236, 363
DpnI	GATC	5 cut(s)	66, 243, 266, 520, 552
DpnII	GATC	5 cut(s)	64, 241, 264, 518, 550
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	2 cut(s)	445, 512
FaqI	GGGAC	3 cut(s)	115, 205, 401
FatI	CATG	2 cut(s)	441, 508
FauNDI	CATATG	1 cut(s)	371
Fnu4HI	GCNGC	3 cut(s)	54, 95, 162
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	3 cut(s)	54, 95, 162
FspBI	CTAG	2 cut(s)	287, 410
GluI	GCNGC	3 cut(s)	54, 95, 162
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	2 cut(s)	79, 189
Hin1II	CATG	2 cut(s)	445, 512
HinfI	GANTC	2 cut(s)	193, 202
HpaII	CCGG	2 cut(s)	79, 189
HphI	GGTGA	1 cut(s)	359
Hpy188I	TCNGA	4 cut(s)	343, 515, 523, 547
Hpy188III	TCNNGA	2 cut(s)	206, 251
HpyAV	CCTTC	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	7 cut(s)	31, 97, 164, 183, 262, 296, 375
HpyF3I	CTNAG	3 cut(s)	119, 236, 363
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	445, 512
Kzo9I	GATC	5 cut(s)	64, 241, 264, 518, 550
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	548
LpnPI	CCDG	8 cut(s)	68, 92, 123, 150, 169, 202, 291, 382
Lsp1109I	GCAGC	2 cut(s)	81, 148
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	2 cut(s)	287, 410
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	5 cut(s)	66, 243, 266, 520, 552
MboI	GATC	5 cut(s)	64, 241, 264, 518, 550
MboII	GAAGA	3 cut(s)	135, 457, 493
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	2 cut(s)	64, 550
MhlI	GDGCHC	1 cut(s)	579
MluCI	AATT	5 cut(s)	176, 327, 336, 356, 390
MlyI	GAGTC	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	578
MnlI	CCTC	5 cut(s)	13, 16, 509, 541, 543
MseI	TTAA	1 cut(s)	87
MspI	CCGG	2 cut(s)	79, 189
MspR9I	CCNGG	3 cut(s)	79, 138, 190
MunI	CAATTG	1 cut(s)	327
Mva1269I	GAATGC	2 cut(s)	223, 496
MvaI	CCWGG	1 cut(s)	138
NciI	CCSGG	2 cut(s)	79, 190
NdeI	CATATG	1 cut(s)	371
NdeII	GATC	5 cut(s)	64, 241, 264, 518, 550
NlaIII	CATG	2 cut(s)	445, 512
NlaIV	GGNNCC	2 cut(s)	544, 552
NmuCI	GTSAC	1 cut(s)	58
PaeR7I	CTCGAG	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	118
PctI	GAATGC	2 cut(s)	223, 496
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	3 cut(s)	55, 96, 163
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	544, 552
PspPI	GGNCC	2 cut(s)	76, 186
PstI	CTGCAG	2 cut(s)	33, 185
PsuI	RGATCY	2 cut(s)	64, 550
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	3 cut(s)	54, 95, 162
Sau3AI	GATC	5 cut(s)	64, 241, 264, 518, 550
Sau96I	GGNCC	2 cut(s)	76, 186
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	3 cut(s)	79, 138, 190
SduI	GDGCHC	1 cut(s)	579
SetI	ASST	7 cut(s)	27, 96, 120, 156, 163, 170, 315
SfaNI	GCATC	1 cut(s)	306
SfcI	CTRYAG	2 cut(s)	29, 181
Sfr274I	CTCGAG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	186
SlaI	CTCGAG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	5 cut(s)	176, 327, 336, 356, 390
SsiI	CCGC	2 cut(s)	54, 319
SspMI	CTAG	2 cut(s)	287, 410
StyD4I	CCNGG	3 cut(s)	77, 136, 188
StyI	CCWWGG	1 cut(s)	286
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	2 cut(s)	252, 334
TasI	AATT	5 cut(s)	176, 327, 336, 356, 390
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	3 cut(s)	508, 579, 586
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	2 cut(s)	94, 161
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	4 cut(s)	230, 458, 494, 497
TspGWI	ACGGA	2 cut(s)	77, 234
TspRI	CASTG	3 cut(s)	508, 579, 586
VpaK11BI	GGWCC	1 cut(s)	186
XapI	RAATTY	4 cut(s)	176, 336, 356, 390
XhoI	CTCGAG	1 cut(s)	251
XmaJI	CCTAGG	1 cut(s)	286
XspI	CTAG	2 cut(s)	287, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.