Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002960

Physical Location & Seq

Genomic Coordinates Forward (+)

14692865 .. 14693147

Gene Structure 283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGATGATAGTAATGACATGAAGACGAAAATGGATACAATGCTTCAAAGTGTAACGAAGATAGAGAATGCTTGCTTCAGTGTTCATGTTAGAGAATCAGAGTATATGCCTCTACTTGGCTCCGAGGATCCAACTTCCTTTTTATTGGGAGTGCCCAGTGTTGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Translin

Protein Analysis

56

Amino Acids

6.25

Weight (kDa)

4.24

Isoelectric Point (pI)

76.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Translin	PF01997	4 - 32	5.6e-06	Translin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03780 AT2G03780 AT2G03780
fragaria_vesca	FvH4_4g29320 FvH4_4g29320
malus_domestica	MD13G1056700.v1.1 MD16G1056000.v1.1
prunus_persica	Prupe.1G293300_v2.0.a1 Prupe.1G293300_v2.0.a1
pyrus_communis	pycom16g04880
rosa_chinensis	RchiOBHm_Chr3g0459601 RchiOBHm_Chr3g0459611 RchiOBHm_Chr4g0437361
rosa_laevigata	RLG00000006441
rosa_multiflora	Rmu_sc0004759.1_g000014 Rmu_sc0034128.1_g000001 Rmu_ssc0000087.1_g000062
rosa_roxburghii	Rroxscaffold_2G00092570 Rroxscaffold_5G00378550 Rroxscaffold_7G00174990
rosa_rugosa	Rorug01G0449100 Rorug04G0300700 Rorug04G0300800 Rorug04G0300800 Rorug04G0300900 Rorug04G0315600 Rorug05G0011200
rosa_samantha	Rh2BG219700 Rh3CG281200 Rh4BG365200 Rh4BG377800 Rh4CG379400 Rh4CG391900 Rh6BG022300 Rh6BG380600
rosa_wichuraiana	Rw3G022430 Rw4G031130 Rw4G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	122, 135
AcuI	CTGAAG	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	47
AlwI	GGATC	2 cut(s)	122, 135
BaeGI	GKGCMC	1 cut(s)	156
BamHI	GGATCC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	28
BfuI	GTATCC	1 cut(s)	28
BmiI	GGNNCC	2 cut(s)	121, 129
BmrI	ACTGGG	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	156
BseSI	GKGCMC	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	121, 129
BspPI	GGATC	2 cut(s)	122, 135
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstSLI	GKGCMC	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	85, 163
Cac8I	GCNNGC	1 cut(s)	73
CviAII	CATG	2 cut(s)	19, 86
CviJI	RGCY	1 cut(s)	120
CviKI_1	RGCY	1 cut(s)	120
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	61
FaeI	CATG	2 cut(s)	22, 89
FaiI	YATR	6 cut(s)	20, 87, 105, 107, 167, 169
FatI	CATG	2 cut(s)	18, 85
FokI	GGATG	1 cut(s)	17
FspEI	CC	9 cut(s)	17, 102, 110, 123, 131, 132, 136, 144, 151
Hin1II	CATG	2 cut(s)	22, 89
HinfI	GANTC	1 cut(s)	95
Hpy188I	TCNGA	2 cut(s)	100, 124
Hsp92II	CATG	2 cut(s)	22, 89
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	2 cut(s)	34, 70
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	2 cut(s)	118, 120
Mva1269I	GAATGC	1 cut(s)	73
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	22, 89
NlaIV	GGNNCC	2 cut(s)	121, 129
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	121, 129
PsuI	RGATCY	1 cut(s)	127
Sau3AI	GATC	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	156
SgeI	CNNG	5 cut(s)	31, 84, 98, 128, 136
TfiI	GAWTC	1 cut(s)	95
TscAI	CASTG	2 cut(s)	85, 163
TspDTI	ATGAA	2 cut(s)	35, 74
TspRI	CASTG	2 cut(s)	85, 163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.