MD16G1056000.v1.1

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0002960
Physical Location & Seq
Forward (+)
3987316 .. 3989810
2495 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1056000.v1.1.491

Sequence Viewer

Length: 846 bp
ATGTTGAAGTTGCAGCGGTTATCTCTCGCGATGGCTCTCAAACCCCACCGCCTTCACTCCATTGCAGATACGACGTCGCAGAGCGGACCCAAAAAGGCGAGGACGATGACCACCGAAACCTCCTCCATGAAAGAAGGCTTCTCCAAATACGCCGATTATCTCAACAATCTCAATGACAAGCGGGAAAGGGTCGTAAAAGCAAGTCGCGATATCACCATTAACAGCAAAAAGGTCATCTTTCAGGTTCACAGAATCAGTAAACACAACAAAGAGGAAGTCCTGCAGAAGGCTGAAAAGGATTTAGTAGCTGTGACGGATCAGTACATTTCCCGGCTGGTTAGAGAGCTGCAGGGGACTGATTTTTGGAAGCTGAGACGAGCATACTCACCTGGGGTACAAGAATATGTTGAAGCTGCAACCTTCTGTAAATTTTGCAGGACTGGGACTCTTTTAAATCTTGAGGAGATAAATGCCACCTTGCTGCCACTCAGTGATCCGTCTCTTGAACCTTTGCAGATCAATGTACTTGATTATCTGCTCGGGCTTGCAGATTTGACTGGAGAGCTGATGCGGCTGGCAATTGGTCGAATTTCAGATGGAGAACTTGAATTTGCTGATAAGATATGCAAGTTTGTGCGTGAAATTTACAGGGAACTGACCCTTGTTGTTCCATTTATGGATGAGAGCAATGACATGAAAACAAAAATGGATACAATGCTTCAAAGTGTTATGAAGATAGAAAATGCTTGCTTCGGTGTTCATGTGAGAGGATCAGAGTATATGCCGCTACTTGGCTCCGACGATCCAACTTCCTTCTTATTGGCAGTGCCCGATGTCGAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

282

Amino Acids

31.91

Weight (kDa)

6.55

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 59 - 257 1.6e-58 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 77
AccBSI CCGCTC 1 cut(s) 84
AccII CGCG 2 cut(s) 29, 207
AciI CCGC 6 cut(s) 16, 49, 84, 181, 571, 785
AclWI GGATC 4 cut(s) 324, 488, 778, 797
AcsI RAATTY 4 cut(s) 428, 588, 608, 642
AcyI GRCGYC 1 cut(s) 74
AdeI CACNNNGTG 1 cut(s) 491
AfaI GTAC 3 cut(s) 323, 396, 525
AfiI CCNNNNNNNGG 2 cut(s) 286, 791
AgsI TTSAA 5 cut(s) 7, 410, 506, 608, 722
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 5 cut(s) 308, 346, 370, 413, 565
AluI AGCT 5 cut(s) 308, 346, 370, 413, 565
Alw26I GTCTC 2 cut(s) 367, 504
AlwI GGATC 4 cut(s) 324, 488, 778, 797
Ama87I CYCGRG 1 cut(s) 539
ApeKI GCWGC 4 cut(s) 13, 346, 413, 481
ApoI RAATTY 4 cut(s) 428, 588, 608, 642
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AspS9I GGNCC 1 cut(s) 86
AsuC2I CCSGG 1 cut(s) 331
AsuHPI GGTGA 2 cut(s) 205, 378
AvaI CYCGRG 1 cut(s) 539
AvaII GGWCC 1 cut(s) 86
BaeGI GKGCMC 1 cut(s) 831
BbvI GCAGC 4 cut(s) 25, 333, 400, 468
BccI CCATC 2 cut(s) 25, 590
BciT130I CCWGG 1 cut(s) 390
BciVI GTATCC 1 cut(s) 703
BcnI CCSGG 1 cut(s) 331
BcoDI GTCTC 2 cut(s) 367, 504
BfmI CTRYAG 2 cut(s) 281, 347
BfuI GTATCC 1 cut(s) 703
BisI GCNGC 6 cut(s) 14, 347, 414, 482, 572, 785
BlsI GCNGC 6 cut(s) 15, 348, 415, 483, 573, 786
Bme1390I CCNGG 2 cut(s) 331, 390
Bme18I GGWCC 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 539
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 2 cut(s) 88, 796
BmrFI CCNGG 2 cut(s) 331, 390
BmrI ACTGGG 1 cut(s) 450
BmsI GCATC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 450
BpmI CTGGAG 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 479
BpuMI CCSGG 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 389
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 791
Bse1I ACTGG 2 cut(s) 445, 562
Bse3DI GCAATG 2 cut(s) 60, 694
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 389
BseGI GGATG 1 cut(s) 685
BseLI CCNNNNNNNGG 2 cut(s) 286, 791
BseMI GCAATG 2 cut(s) 60, 694
BseMII CTCAG 2 cut(s) 362, 502
BseNI ACTGG 2 cut(s) 445, 562
BseRI GAGGAG 2 cut(s) 112, 476
BseSI GKGCMC 1 cut(s) 831
BseXI GCAGC 4 cut(s) 25, 333, 400, 468
Bsh1236I CGCG 2 cut(s) 29, 207
BsiHKCI CYCGRG 1 cut(s) 539
BsiSI CCGG 1 cut(s) 331
BslFI GGGAC 2 cut(s) 367, 457
BslI CCNNNNNNNGG 2 cut(s) 286, 791
BsmAI GTCTC 2 cut(s) 367, 504
BsmBI CGTCTC 2 cut(s) 367, 504
BsmFI GGGAC 2 cut(s) 367, 457
BsoBI CYCGRG 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 831
Bsp143I GATC 5 cut(s) 316, 493, 516, 770, 802
Bsp68I TCGCGA 2 cut(s) 29, 207
BspACI CCGC 6 cut(s) 16, 49, 84, 181, 571, 785
BspCNI CTCAG 2 cut(s) 363, 501
BspFNI CGCG 2 cut(s) 29, 207
BspLI GGNNCC 2 cut(s) 88, 796
BspMAI CTGCAG 2 cut(s) 285, 351
BspPI GGATC 4 cut(s) 324, 488, 778, 797
BsrBI CCGCTC 1 cut(s) 84
BsrDI GCAATG 2 cut(s) 60, 694
BsrI ACTGG 2 cut(s) 445, 562
BssECI CCNNGG 1 cut(s) 389
BssMI GATC 5 cut(s) 316, 493, 516, 770, 802
BssNI GRCGYC 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 390
BstACI GRCGYC 1 cut(s) 74
BstC8I GCNNGC 3 cut(s) 546, 576, 748
BstDEI CTNAG 2 cut(s) 371, 488
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 685
BstFNI CGCG 2 cut(s) 29, 207
BstKTI GATC 5 cut(s) 319, 496, 519, 773, 805
BstMAI GTCTC 2 cut(s) 367, 504
BstMBI GATC 5 cut(s) 316, 493, 516, 770, 802
BstMWI GCNNNNNNNGC 1 cut(s) 571
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 2 cut(s) 329, 388
BstSFI CTRYAG 2 cut(s) 281, 347
BstSLI GKGCMC 1 cut(s) 831
BstUI CGCG 2 cut(s) 29, 207
BstV1I GCAGC 4 cut(s) 25, 333, 400, 468
BsuI GTATCC 1 cut(s) 703
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 685
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 2 cut(s) 496, 831
BtuMI TCGCGA 2 cut(s) 29, 207
Cac8I GCNNGC 3 cut(s) 546, 576, 748
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 3 cut(s) 322, 395, 524
CviAII CATG 3 cut(s) 127, 694, 761
CviQI GTAC 3 cut(s) 322, 395, 524
DdeI CTNAG 2 cut(s) 371, 488
DpnI GATC 5 cut(s) 318, 495, 518, 772, 804
DpnII GATC 5 cut(s) 316, 493, 516, 770, 802
DraI TTTAAA 1 cut(s) 453
DraIII CACNNNGTG 1 cut(s) 491
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 539
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 388
EcoRV GATATC 1 cut(s) 211
Esp3I CGTCTC 2 cut(s) 367, 504
FaeI CATG 3 cut(s) 130, 697, 764
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 2 cut(s) 367, 457
FatI CATG 3 cut(s) 126, 693, 760
FauI CCCGC 1 cut(s) 174
Fnu4HI GCNGC 6 cut(s) 14, 347, 414, 482, 572, 785
FokI GGATG 1 cut(s) 692
Fsp4HI GCNGC 6 cut(s) 14, 347, 414, 482, 572, 785
GluI GCNGC 6 cut(s) 14, 347, 414, 482, 572, 785
GsuI CTGGAG 1 cut(s) 579
HapII CCGG 1 cut(s) 331
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 3 cut(s) 130, 697, 764
HinfI GANTC 2 cut(s) 252, 445
HpaII CCGG 1 cut(s) 331
HphI GGTGA 2 cut(s) 205, 378
Hpy166II GTNNAC 2 cut(s) 247, 260
Hpy188I TCNGA 3 cut(s) 595, 775, 799
Hpy188III TCNNGA 4 cut(s) 28, 206, 458, 503
Hpy8I GTNNAC 2 cut(s) 247, 260
Hpy99I CGWCG 3 cut(s) 76, 79, 803
HpyAV CCTTC 5 cut(s) 62, 128, 280, 430, 823
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 9 cut(s) 13, 65, 283, 349, 416, 435, 514, 548, 627
HpyF10VI GCNNNNNNNGC 1 cut(s) 571
HpyF3I CTNAG 2 cut(s) 371, 488
HpySE526I ACGT 1 cut(s) 74
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 3 cut(s) 130, 697, 764
Kzo9I GATC 5 cut(s) 316, 493, 516, 770, 802
LmnI GCTCC 1 cut(s) 800
Lsp1109I GCAGC 4 cut(s) 25, 333, 400, 468
LweI GCATC 1 cut(s) 558
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 310
MalI GATC 5 cut(s) 318, 495, 518, 772, 804
MbiI CCGCTC 1 cut(s) 84
MboI GATC 5 cut(s) 316, 493, 516, 770, 802
MboII GAAGA 1 cut(s) 745
MfeI CAATTG 1 cut(s) 579
MhlI GDGCHC 1 cut(s) 831
MluCI AATT 5 cut(s) 428, 579, 588, 608, 642
MlyI GAGTC 1 cut(s) 439
MmeI TCCRAC 2 cut(s) 822, 830
MnlI CCTC 6 cut(s) 93, 130, 133, 265, 454, 761
MseI TTAA 2 cut(s) 219, 452
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 2 cut(s) 331, 390
MunI CAATTG 1 cut(s) 579
MvaI CCWGG 1 cut(s) 390
MvnI CGCG 2 cut(s) 29, 207
MwoI GCNNNNNNNGC 1 cut(s) 571
NciI CCSGG 1 cut(s) 331
NdeII GATC 5 cut(s) 316, 493, 516, 770, 802
NlaIII CATG 3 cut(s) 130, 697, 764
NlaIV GGNNCC 2 cut(s) 88, 796
NmuCI GTSAC 1 cut(s) 310
NruI TCGCGA 2 cut(s) 29, 207
PfeI GAWTC 1 cut(s) 252
PkrI GCNGC 6 cut(s) 15, 348, 415, 483, 573, 786
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 2 cut(s) 88, 796
PspPI GGNCC 1 cut(s) 86
PstI CTGCAG 2 cut(s) 285, 351
RruI TCGCGA 2 cut(s) 29, 207
RsaI GTAC 3 cut(s) 323, 396, 525
RsaNI GTAC 3 cut(s) 322, 395, 524
SaqAI TTAA 2 cut(s) 219, 452
SatI GCNGC 6 cut(s) 14, 347, 414, 482, 572, 785
Sau3AI GATC 5 cut(s) 316, 493, 516, 770, 802
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 439
ScrFI CCNGG 2 cut(s) 331, 390
SduI GDGCHC 1 cut(s) 831
SfaNI GCATC 1 cut(s) 558
SfcI CTRYAG 2 cut(s) 281, 347
SinI GGWCC 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 5 cut(s) 428, 579, 588, 608, 642
SsiI CCGC 6 cut(s) 16, 49, 84, 181, 571, 785
StyD4I CCNGG 2 cut(s) 329, 388
TaiI ACGT 1 cut(s) 77
TaqI TCGA 2 cut(s) 586, 837
TasI AATT 5 cut(s) 428, 579, 588, 608, 642
TatI WGTACW 2 cut(s) 321, 523
TauI GCSGC 2 cut(s) 574, 787
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 2 cut(s) 219, 452
Tru9I TTAA 2 cut(s) 219, 452
TscAI CASTG 2 cut(s) 496, 831
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 4 cut(s) 13, 346, 413, 481
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 4 cut(s) 143, 710, 746, 749
TspGWI ACGGA 2 cut(s) 329, 486
TspRI CASTG 2 cut(s) 496, 831
VpaK11BI GGWCC 1 cut(s) 86
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 4 cut(s) 428, 588, 608, 642
ZraI GACGTC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.