Rw4G031130

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002960
Physical Location & Seq
Forward (+)
57989609 .. 57991341
1733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G031130.1

Sequence Viewer

Length: 945 bp
ATGTTGGTGTCGTCTAGCAGAGAAATAGTGTGTGATAGGGGCGTAAAACCTTCTGGGAGGGAGAGACAGATGTTGCAGCGCTACGCATTATTGCAGAGGATTTCAGTGATGGCTCTCAAACCCCACCGCCTCCATAACCTCGCCGATACGACGTCGCTTGGCGTAGCAAAGAGGCCAAGAACAATGGCCACCGATTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTATGAAAGACGCCTTCTCCCAGTACGCCGATTACCTCAATAACCAGAATGATAAGCGTGAAAGAATCGTCAAAGCGAGTCGGGATATCACCATGAACAGCAAAAAGGTCATCTTTCAAGTCCACAGAATGAGCAAGCATAACAGAGAGGAGGTTCTGCAGAAAGCCGAAAAGGATTTAGCCGCCGTGACGGATCTGTTCGTGGCCCGGCTGGTTAAAGAGCTGCAAGGGACTGATTTTTGGAAGCTACGACGAGCATACTCGCCTGGGATACAAGAGTACGTTGAAGCTGCAACCTTCTGTAAATTCTGCAGGACCGGGACTCTTTTGAATCTTGATGAGATGAATGCTACATTGCTACCACTCAGCGATCCCTCTCTCGAGCCTTTGCAGATCAATGTCCTTGACTATCTCCTAGGGCTTGCAGATTTGACTGGAGAGCTGATGCGGTTGGCAATTGGTCGAATTTCAGATGGTGAAGTTGAATTTGCTGAGAACATATGCAAGTTTGTGCGTGAAATTTACAGGGAACTGACCCTAGTTGTCCCCTTTATGGATGATAGTAATGACATGAAGACGAAAATGGATACAATGCTTCAAAGTGTAATGAAGATAGAGAATGCTTGTTTCAGTGTTCATGTCAGAGGATCAGAGTATATGCCTCTACTTGGCTCCGAGGATCCAACTTCCTTTTTATTGGCAGTGCCCAGTGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

314

Amino Acids

35.48

Weight (kDa)

6.97

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 92 - 290 6.2e-59 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 155
AciI CCGC 3 cut(s) 127, 405, 670
AclWI GGATC 5 cut(s) 423, 587, 877, 896, 909
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 4 cut(s) 527, 687, 707, 741
AcyI GRCGYC 2 cut(s) 152, 234
AfaI GTAC 2 cut(s) 248, 503
AfeI AGCGCT 1 cut(s) 80
AfiI CCNNNNNNNGG 2 cut(s) 775, 890
AgsI TTSAA 5 cut(s) 341, 509, 553, 707, 821
AjnI CCWGG 1 cut(s) 487
AluBI AGCT 4 cut(s) 445, 469, 512, 664
AluI AGCT 4 cut(s) 445, 469, 512, 664
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 5 cut(s) 423, 587, 877, 896, 909
Ama87I CYCGRG 1 cut(s) 602
Aor51HI AGCGCT 1 cut(s) 80
AoxI GGCC 3 cut(s) 173, 186, 426
ApeKI GCWGC 3 cut(s) 76, 445, 512
ApoI RAATTY 4 cut(s) 527, 687, 707, 741
AspA2I CCTAGG 1 cut(s) 637
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 2 cut(s) 427, 537
AsuC2I CCSGG 2 cut(s) 430, 541
AsuHPI GGTGA 2 cut(s) 304, 710
AvaI CYCGRG 1 cut(s) 602
AvaII GGWCC 1 cut(s) 537
AvrII CCTAGG 1 cut(s) 637
BaeGI GKGCMC 1 cut(s) 930
BaeI ACNNNNGTAYC 2 cut(s) 485, 518
BalI TGGCCA 1 cut(s) 188
BamHI GGATCC 1 cut(s) 901
BbsI GAAGAC 1 cut(s) 803
BbvI GCAGC 3 cut(s) 88, 432, 499
BccI CCATC 2 cut(s) 103, 689
BceAI ACGGC 1 cut(s) 392
BciT130I CCWGG 1 cut(s) 489
BciVI GTATCC 2 cut(s) 486, 802
BcnI CCSGG 2 cut(s) 430, 541
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 3 cut(s) 15, 638, 761
BfmI CTRYAG 2 cut(s) 380, 532
BfoI RGCGCY 1 cut(s) 82
BfuI GTATCC 2 cut(s) 486, 802
BisI GCNGC 4 cut(s) 77, 405, 446, 513
BlnI CCTAGG 1 cut(s) 637
BlsI GCNGC 4 cut(s) 78, 406, 447, 514
Bme1390I CCNGG 3 cut(s) 430, 489, 541
Bme18I GGWCC 1 cut(s) 537
BmeT110I CYCGRG 1 cut(s) 602
BmgT120I GGNCC 2 cut(s) 427, 537
BmiI GGNNCC 2 cut(s) 895, 903
BmrFI CCNGG 3 cut(s) 430, 489, 541
BmrI ACTGGG 2 cut(s) 238, 924
BmsI GCATC 1 cut(s) 657
BmuI ACTGGG 2 cut(s) 238, 924
BpiI GAAGAC 1 cut(s) 803
BpmI CTGGAG 1 cut(s) 678
BpuMI CCSGG 2 cut(s) 430, 541
BsaHI GRCGYC 2 cut(s) 152, 234
BsaJI CCNNGG 3 cut(s) 488, 637, 897
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 775, 890
Bse1I ACTGG 3 cut(s) 244, 661, 930
Bse3DI GCAATG 1 cut(s) 575
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 3 cut(s) 488, 637, 897
BseGI GGATG 1 cut(s) 784
BseLI CCNNNNNNNGG 2 cut(s) 775, 890
BseMI GCAATG 1 cut(s) 575
BseMII CTCAG 2 cut(s) 601, 705
BseNI ACTGG 3 cut(s) 244, 661, 930
BseRI GAGGAG 9 cut(s) 190, 193, 196, 199, 202, 205, 208, 211, 386
BseSI GKGCMC 1 cut(s) 930
BseXI GCAGC 3 cut(s) 88, 432, 499
BshFI GGCC 3 cut(s) 175, 188, 428
BsiHKCI CYCGRG 1 cut(s) 602
BsiSI CCGG 2 cut(s) 430, 540
BslFI GGGAC 3 cut(s) 466, 556, 752
BslI CCNNNNNNNGG 2 cut(s) 775, 890
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 3 cut(s) 466, 556, 752
BsmI GAATGC 2 cut(s) 574, 847
BsnI GGCC 3 cut(s) 175, 188, 428
BsoBI CYCGRG 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 930
Bsp143I GATC 5 cut(s) 415, 592, 615, 869, 901
BspACI CCGC 3 cut(s) 127, 405, 670
BspANI GGCC 3 cut(s) 175, 188, 428
BspCNI CTCAG 2 cut(s) 600, 706
BspLI GGNNCC 2 cut(s) 895, 903
BspMAI CTGCAG 2 cut(s) 384, 536
BspPI GGATC 5 cut(s) 423, 587, 877, 896, 909
BsrDI GCAATG 1 cut(s) 575
BsrI ACTGG 3 cut(s) 244, 661, 930
BssECI CCNNGG 3 cut(s) 488, 637, 897
BssMI GATC 5 cut(s) 415, 592, 615, 869, 901
BssNI GRCGYC 2 cut(s) 152, 234
BssT1I CCWWGG 1 cut(s) 637
Bst2UI CCWGG 1 cut(s) 489
BstACI GRCGYC 2 cut(s) 152, 234
BstC8I GCNNGC 2 cut(s) 359, 645
BstDEI CTNAG 2 cut(s) 587, 714
BstF5I GGATG 1 cut(s) 784
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 5 cut(s) 418, 595, 618, 872, 904
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 5 cut(s) 415, 592, 615, 869, 901
BstNI CCWGG 1 cut(s) 489
BstSCI CCNGG 3 cut(s) 428, 487, 539
BstSFI CTRYAG 2 cut(s) 380, 532
BstSLI GKGCMC 1 cut(s) 930
BstV1I GCAGC 3 cut(s) 88, 432, 499
BstV2I GAAGAC 1 cut(s) 803
BstX2I RGATCY 2 cut(s) 415, 901
BstYI RGATCY 2 cut(s) 415, 901
BsuI GTATCC 2 cut(s) 486, 802
BsuRI GGCC 3 cut(s) 175, 188, 428
BtsCI GGATG 1 cut(s) 784
BtsI GCAGTG 1 cut(s) 930
BtsIMutI CAGTG 4 cut(s) 111, 859, 930, 937
Cac8I GCNNGC 2 cut(s) 359, 645
CfoI GCGC 1 cut(s) 81
Cfr13I GGNCC 2 cut(s) 427, 537
CseI GACGC 1 cut(s) 242
Csp6I GTAC 2 cut(s) 247, 502
CviAII CATG 3 cut(s) 316, 793, 860
CviQI GTAC 2 cut(s) 247, 502
DdeI CTNAG 2 cut(s) 587, 714
DpnI GATC 5 cut(s) 417, 594, 617, 871, 903
DpnII GATC 5 cut(s) 415, 592, 615, 869, 901
EaeI YGGCCR 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 637
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 537
Eco47III AGCGCT 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 602
EcoRII CCWGG 1 cut(s) 487
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 637
ErhI CCWWGG 1 cut(s) 637
FaeI CATG 3 cut(s) 319, 796, 863
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FaqI GGGAC 3 cut(s) 466, 556, 752
FatI CATG 3 cut(s) 315, 792, 859
FauNDI CATATG 1 cut(s) 722
Fnu4HI GCNGC 4 cut(s) 77, 405, 446, 513
FokI GGATG 1 cut(s) 791
Fsp4HI GCNGC 4 cut(s) 77, 405, 446, 513
FspBI CTAG 3 cut(s) 15, 638, 761
GlaI GCGC 1 cut(s) 80
GluI GCNGC 4 cut(s) 77, 405, 446, 513
GsuI CTGGAG 1 cut(s) 678
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 3 cut(s) 175, 188, 428
HapII CCGG 2 cut(s) 430, 540
HgaI GACGC 1 cut(s) 242
HhaI GCGC 1 cut(s) 81
Hin1I GRCGYC 2 cut(s) 152, 234
Hin1II CATG 3 cut(s) 319, 796, 863
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HinfI GANTC 5 cut(s) 194, 288, 301, 544, 553
HpaII CCGG 2 cut(s) 430, 540
HphI GGTGA 2 cut(s) 304, 710
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 4 cut(s) 694, 866, 874, 898
Hpy188III TCNNGA 3 cut(s) 305, 557, 602
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 3 cut(s) 154, 157, 477
HpyAV CCTTC 3 cut(s) 60, 247, 529
HpyCH4IV ACGT 2 cut(s) 152, 504
HpyCH4V TGCA 9 cut(s) 76, 94, 382, 448, 515, 534, 613, 647, 726
HpyF3I CTNAG 2 cut(s) 587, 714
HpySE526I ACGT 2 cut(s) 152, 504
Hsp92I GRCGYC 2 cut(s) 152, 234
Hsp92II CATG 3 cut(s) 319, 796, 863
HspAI GCGC 1 cut(s) 79
Kzo9I GATC 5 cut(s) 415, 592, 615, 869, 901
LmnI GCTCC 1 cut(s) 899
Lsp1109I GCAGC 3 cut(s) 88, 432, 499
LweI GCATC 1 cut(s) 657
MaeI CTAG 3 cut(s) 15, 638, 761
MaeII ACGT 2 cut(s) 152, 504
MaeIII GTNAC 1 cut(s) 409
MalI GATC 5 cut(s) 417, 594, 617, 871, 903
MboI GATC 5 cut(s) 415, 592, 615, 869, 901
MboII GAAGA 2 cut(s) 808, 844
MfeI CAATTG 1 cut(s) 678
MflI RGATCY 2 cut(s) 415, 901
MhlI GDGCHC 1 cut(s) 930
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 5 cut(s) 527, 678, 687, 707, 741
MluNI TGGCCA 1 cut(s) 188
MlyI GAGTC 2 cut(s) 310, 538
MmeI TCCRAC 1 cut(s) 929
Mox20I TGGCCA 1 cut(s) 188
MscI TGGCCA 1 cut(s) 188
MseI TTAA 1 cut(s) 438
Msp20I TGGCCA 1 cut(s) 188
MspI CCGG 2 cut(s) 430, 540
MspR9I CCNGG 3 cut(s) 430, 489, 541
MunI CAATTG 1 cut(s) 678
Mva1269I GAATGC 2 cut(s) 574, 847
MvaI CCWGG 1 cut(s) 489
NciI CCSGG 2 cut(s) 430, 541
NdeI CATATG 1 cut(s) 722
NdeII GATC 5 cut(s) 415, 592, 615, 869, 901
NlaIII CATG 3 cut(s) 319, 796, 863
NlaIV GGNNCC 2 cut(s) 895, 903
NmuCI GTSAC 1 cut(s) 409
PaeR7I CTCGAG 1 cut(s) 602
PctI GAATGC 2 cut(s) 574, 847
PfeI GAWTC 3 cut(s) 194, 288, 553
PkrI GCNGC 4 cut(s) 78, 406, 447, 514
PleI GAGTC 2 cut(s) 309, 538
PpsI GAGTC 2 cut(s) 309, 538
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 2 cut(s) 895, 903
PspPI GGNCC 2 cut(s) 427, 537
PstI CTGCAG 2 cut(s) 384, 536
PsuI RGATCY 2 cut(s) 415, 901
RsaI GTAC 2 cut(s) 248, 503
RsaNI GTAC 2 cut(s) 247, 502
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 4 cut(s) 77, 405, 446, 513
Sau3AI GATC 5 cut(s) 415, 592, 615, 869, 901
Sau96I GGNCC 2 cut(s) 427, 537
SchI GAGTC 2 cut(s) 310, 538
ScrFI CCNGG 3 cut(s) 430, 489, 541
SduI GDGCHC 1 cut(s) 930
SfaNI GCATC 1 cut(s) 657
SfcI CTRYAG 2 cut(s) 380, 532
Sfr274I CTCGAG 1 cut(s) 602
SinI GGWCC 1 cut(s) 537
SlaI CTCGAG 1 cut(s) 602
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
Sse9I AATT 5 cut(s) 527, 678, 687, 707, 741
SsiI CCGC 3 cut(s) 127, 405, 670
SspMI CTAG 3 cut(s) 15, 638, 761
StyD4I CCNGG 3 cut(s) 428, 487, 539
StyI CCWWGG 1 cut(s) 637
TaiI ACGT 2 cut(s) 155, 507
TaqI TCGA 2 cut(s) 603, 685
TasI AATT 5 cut(s) 527, 678, 687, 707, 741
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 3 cut(s) 194, 288, 553
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 4 cut(s) 111, 859, 930, 937
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 3 cut(s) 76, 445, 512
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 6 cut(s) 242, 332, 581, 809, 845, 848
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 4 cut(s) 111, 859, 930, 937
VpaK11BI GGWCC 1 cut(s) 537
XapI RAATTY 4 cut(s) 527, 687, 707, 741
XhoI CTCGAG 1 cut(s) 602
XmaJI CCTAGG 1 cut(s) 637
XspI CTAG 3 cut(s) 15, 638, 761
ZraI GACGTC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.