Rh4CG379400

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002960
Physical Location & Seq
Forward (+)
63184762 .. 63188023
3262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG379400.1

Sequence Viewer

Length: 687 bp
ATGGCCGCCGAATCCTCCTCCTCCTCCTCCTCCTCCTCTATGAAAGACGCCTTCTCCCAATACGCCGATTACCTCAATAACCAAAATGATAAACGTGAAAGAATCGTCAAAGCGAGTCGGGATATCACCATGAACAGCAAAAAGGTCATCTTTCAAGTCCACAGAATGAGCAAGCATAACAGAGAGGAGGTTCTGCAGAAAGCCGAAAAGGATTTAGCCGCCGTGACGGATCAGTTGGTGGCCCGGCTGGTTAAAGAGCTGCAAGGGACTGATTTTTGGAAGCTAAGAAGAGCATACTCGCCTGGGATACAAGAGTACGTTGAAGCTGCAACCTTCTGTAAATTCTGCAGGACCGGGACTCTTTTGAATCTTGATGAGATGAATGCTACTTTGCTACCACTCAGCGATCCCTCTCTCGAGCCTTTGCAGATCAATGTCCTTGACTATCTCCTAGGGCTTGCAGATTTGACTGGAGAGCTGATGCGGTTGGCAATTGGTCGAATTTCAGATGGTGAAGTTGAATTTGCTGAGAACATATGCAAGTTTGTGCGTGAAATTTACAGGGAACTGACCCTAGTTGTCCCCTTTATGGATGATAGTAATGACATGAAGACGAAAATGGATACAATGCTTCAAAGTGTAATGAAGATAGAGAATGGTATGTTTCTGCAGTTTTCTTGCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

228

Amino Acids

25.95

Weight (kDa)

5.24

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 30 - 220 3.2e-55 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 6, 219, 484
AclWI GGATC 2 cut(s) 237, 401
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 341, 501, 521, 555
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 589
AgsI TTSAA 5 cut(s) 155, 323, 367, 521, 635
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 4 cut(s) 259, 283, 326, 478
AluI AGCT 4 cut(s) 259, 283, 326, 478
AlwI GGATC 2 cut(s) 237, 401
Ama87I CYCGRG 1 cut(s) 416
AoxI GGCC 2 cut(s) 3, 240
ApeKI GCWGC 2 cut(s) 259, 326
ApoI RAATTY 4 cut(s) 341, 501, 521, 555
AspA2I CCTAGG 1 cut(s) 451
AspS9I GGNCC 2 cut(s) 241, 351
AsuC2I CCSGG 2 cut(s) 244, 355
AsuHPI GGTGA 2 cut(s) 118, 524
AvaI CYCGRG 1 cut(s) 416
AvaII GGWCC 1 cut(s) 351
AvrII CCTAGG 1 cut(s) 451
BaeI ACNNNNGTAYC 2 cut(s) 299, 332
BbsI GAAGAC 1 cut(s) 617
BbvI GCAGC 2 cut(s) 246, 313
BccI CCATC 1 cut(s) 503
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 303
BciVI GTATCC 2 cut(s) 300, 616
BcnI CCSGG 2 cut(s) 244, 355
BfaI CTAG 2 cut(s) 452, 575
BfmI CTRYAG 4 cut(s) 194, 346, 668, 683
BfuI GTATCC 2 cut(s) 300, 616
BisI GCNGC 4 cut(s) 6, 219, 260, 327
BlnI CCTAGG 1 cut(s) 451
BlsI GCNGC 4 cut(s) 7, 220, 261, 328
Bme1390I CCNGG 3 cut(s) 244, 303, 355
Bme18I GGWCC 1 cut(s) 351
BmeT110I CYCGRG 1 cut(s) 416
BmgT120I GGNCC 2 cut(s) 241, 351
BmrFI CCNGG 3 cut(s) 244, 303, 355
BmsI GCATC 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 617
BpmI CTGGAG 1 cut(s) 492
BpuMI CCSGG 2 cut(s) 244, 355
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 302, 451
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 589
Bse1I ACTGG 1 cut(s) 475
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 302, 451
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 1 cut(s) 589
BseMII CTCAG 2 cut(s) 415, 519
BseNI ACTGG 1 cut(s) 475
BseRI GAGGAG 8 cut(s) 7, 10, 13, 16, 19, 22, 25, 200
BseXI GCAGC 2 cut(s) 246, 313
BshFI GGCC 2 cut(s) 5, 242
BsiHKCI CYCGRG 1 cut(s) 416
BsiSI CCGG 2 cut(s) 244, 354
BslFI GGGAC 3 cut(s) 280, 370, 566
BslI CCNNNNNNNGG 1 cut(s) 589
BsmFI GGGAC 3 cut(s) 280, 370, 566
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 2 cut(s) 5, 242
BsoBI CYCGRG 1 cut(s) 416
Bsp143I GATC 3 cut(s) 229, 406, 429
BspACI CCGC 3 cut(s) 6, 219, 484
BspANI GGCC 2 cut(s) 5, 242
BspCNI CTCAG 2 cut(s) 414, 520
BspMAI CTGCAG 3 cut(s) 198, 350, 672
BspPI GGATC 2 cut(s) 237, 401
BspQI GCTCTTC 1 cut(s) 283
BsrI ACTGG 1 cut(s) 475
BssECI CCNNGG 2 cut(s) 302, 451
BssMI GATC 3 cut(s) 229, 406, 429
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 451
Bst2UI CCWGG 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 283
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 173, 459
BstDEI CTNAG 3 cut(s) 284, 401, 528
BstF5I GGATG 1 cut(s) 598
BstKTI GATC 3 cut(s) 232, 409, 432
BstMBI GATC 3 cut(s) 229, 406, 429
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 3 cut(s) 242, 301, 353
BstSFI CTRYAG 4 cut(s) 194, 346, 668, 683
BstV1I GCAGC 2 cut(s) 246, 313
BstV2I GAAGAC 1 cut(s) 617
BsuI GTATCC 2 cut(s) 300, 616
BsuRI GGCC 2 cut(s) 5, 242
BtsCI GGATG 1 cut(s) 598
Cac8I GCNNGC 2 cut(s) 173, 459
Cfr13I GGNCC 2 cut(s) 241, 351
CseI GACGC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 316
CviAII CATG 2 cut(s) 130, 607
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 3 cut(s) 284, 401, 528
DpnI GATC 3 cut(s) 231, 408, 431
DpnII GATC 3 cut(s) 229, 406, 429
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 451
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 301
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 2 cut(s) 133, 610
FaiI YATR 9 cut(s) 41, 131, 177, 295, 536, 538, 590, 608, 662
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 3 cut(s) 280, 370, 566
FatI CATG 2 cut(s) 129, 606
FauNDI CATATG 1 cut(s) 536
Fnu4HI GCNGC 4 cut(s) 6, 219, 260, 327
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 4 cut(s) 6, 219, 260, 327
FspBI CTAG 2 cut(s) 452, 575
GluI GCNGC 4 cut(s) 6, 219, 260, 327
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 2 cut(s) 5, 242
HapII CCGG 2 cut(s) 244, 354
HgaI GACGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 2 cut(s) 133, 610
HinfI GANTC 5 cut(s) 11, 102, 115, 358, 367
HpaII CCGG 2 cut(s) 244, 354
HphI GGTGA 2 cut(s) 118, 524
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 508
Hpy188III TCNNGA 3 cut(s) 119, 371, 416
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 61, 343
HpyCH4IV ACGT 2 cut(s) 94, 318
HpyCH4V TGCA 8 cut(s) 196, 262, 329, 348, 427, 461, 540, 670
HpyF3I CTNAG 3 cut(s) 284, 401, 528
HpySE526I ACGT 2 cut(s) 94, 318
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 2 cut(s) 133, 610
Kzo9I GATC 3 cut(s) 229, 406, 429
LguI GCTCTTC 1 cut(s) 283
LpnPI CCDG 8 cut(s) 233, 257, 288, 315, 334, 367, 456, 547
Lsp1109I GCAGC 2 cut(s) 246, 313
LweI GCATC 1 cut(s) 471
MaeI CTAG 2 cut(s) 452, 575
MaeII ACGT 2 cut(s) 94, 318
MaeIII GTNAC 1 cut(s) 223
MalI GATC 3 cut(s) 231, 408, 431
MboI GATC 3 cut(s) 229, 406, 429
MboII GAAGA 3 cut(s) 300, 622, 658
MfeI CAATTG 1 cut(s) 492
MluCI AATT 5 cut(s) 341, 492, 501, 521, 555
MlyI GAGTC 2 cut(s) 124, 352
MseI TTAA 1 cut(s) 252
MspI CCGG 2 cut(s) 244, 354
MspR9I CCNGG 3 cut(s) 244, 303, 355
MunI CAATTG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 1 cut(s) 303
NciI CCSGG 2 cut(s) 244, 355
NdeI CATATG 1 cut(s) 536
NdeII GATC 3 cut(s) 229, 406, 429
NlaIII CATG 2 cut(s) 133, 610
NmuCI GTSAC 1 cut(s) 223
PaeR7I CTCGAG 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 283
PctI GAATGC 1 cut(s) 388
PfeI GAWTC 3 cut(s) 11, 102, 367
PkrI GCNGC 4 cut(s) 7, 220, 261, 328
PleI GAGTC 2 cut(s) 123, 352
PpsI GAGTC 2 cut(s) 123, 352
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspPI GGNCC 2 cut(s) 241, 351
PstI CTGCAG 3 cut(s) 198, 350, 672
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SapI GCTCTTC 1 cut(s) 283
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 4 cut(s) 6, 219, 260, 327
Sau3AI GATC 3 cut(s) 229, 406, 429
Sau96I GGNCC 2 cut(s) 241, 351
SchI GAGTC 2 cut(s) 124, 352
ScrFI CCNGG 3 cut(s) 244, 303, 355
SfaNI GCATC 1 cut(s) 471
SfcI CTRYAG 4 cut(s) 194, 346, 668, 683
Sfr274I CTCGAG 1 cut(s) 416
SinI GGWCC 1 cut(s) 351
SlaI CTCGAG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 5 cut(s) 341, 492, 501, 521, 555
SsiI CCGC 3 cut(s) 6, 219, 484
SspMI CTAG 2 cut(s) 452, 575
StyD4I CCNGG 3 cut(s) 242, 301, 353
StyI CCWWGG 1 cut(s) 451
TaiI ACGT 2 cut(s) 97, 321
TaqI TCGA 2 cut(s) 417, 499
TasI AATT 5 cut(s) 341, 492, 501, 521, 555
TauI GCSGC 2 cut(s) 8, 221
TfiI GAWTC 3 cut(s) 11, 102, 367
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 259, 326
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 5 cut(s) 56, 146, 395, 623, 659
TspGWI ACGGA 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 351
XapI RAATTY 4 cut(s) 341, 501, 521, 555
XhoI CTCGAG 1 cut(s) 416
XmaJI CCTAGG 1 cut(s) 451
XspI CTAG 2 cut(s) 452, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.