Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003535

Physical Location & Seq

Genomic Coordinates Reverse (-)

2213960 .. 2217159

Gene Structure 3200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G05810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1743 bp

ATGCATCCCTCCTCCGCCGCCGTCTCCGGCGAACTCACAAAACCACCAACAGCTCCACTCCAACCACTTGTTGACCTAATAACAAACGTCCTCTCCCTCCTCCTCCTCTCTTCCCTCACCGTCCGTTCCTTCATCGGACGGTGGCAAATCCTCCGATCCAAACTCTTCACACTAAACTCATCTCTCTCTTCCTTATCCGAATCACCTCACTGGTCACAAAATCCTCTCCTCCACACTCTCCTCCCTTCTCTCCTCTCAAATCTCCAACGCCTCTCTTCACTCTCCGACCAATGCTCCTCCGCTTCATTCTCCGGTGGTAAACTTCTCATGCAAAGCGACCTCGACATAGCTTCCTCTTCCCTCTCTACTCACATAAGTGACCTTGACCTCCTCCTCAGATCCGGTGTCCTCCACCAACAAAACGCCATCGTTTTATCACTCCCACCACCAACATCAGATAAAGATGACATTGCCTTCTTCATCAGAGACCTCTTCACTCGTCTCCAAATCGGTGGAGCTGAGTTCAAAAAGAAATCTCTAGAATCTCTTCTTCAACTTCTCACCGATAACGAAAAATCCGCAAGAATCATAGCTAAAGAAGGTAATGTTGGTTACTTAGTAACTCTTCTTGATCTCCATCACCATCCTCTAATCCGTGAGCACGCACTCGCCGCCGTCTCGCTGTTAACTTCATCGAGCGCCGACTCGAGAAAGACGGTGTTCGAACAAGGCGGATTAGGTCCATTACTACGATTGCTAGAAACCGGATCTTCACCGTTCAAAACAAGAGCAGCAATAGCGATTGAAGCTATAACCGCCGATCCAGCAACCGCTTGGGCTATCTCAGCTTACGGAGGCGTAACCGTATTAATCGAAGCTTGTAGATCAGGATCTAAACAAGTACAAGAACACATCGCTGGTGCTATAAGCAACATCGCCGCCGTTGAAGAAATCAGAACAACATTAGCTGAAGAAGGAGCTATACCGGTTCTTATCCAACTCTTAATCTCCGGTTCATCATCGGTACAAGAGAAAACCGCGAATTTCATCTCCTTGATCTCATCTTCCGGTGAGTATTACAGAGATTTGATTGTTAGAGAAAGAGGAGGATTACAGATTCTGATTCATTTAGTTCAAGAATCATCAAATCCCGATACGATCGAACACTGTTTGCTTGCTCTCTCTCAGATCTCTGCCATGGAAACAGTTTCTAGGGTTTTATCTTCATCAACAAGGTTCATAATCCGATTAGGTGAATTGATAAAACACGGAAACGTAATCCTTCAACAGATCTCAACTTCTCTTTTATCGAATTTAACAATCAGCGACGGTAACAAACGAGCCGTCGCTGATTGTTTAAGCTCGTTGATTCGGTTAATGGAATCGCCGAAACCGGCGGGGTTACAAGAAGCGGCGACGGAGGCGGCGAAGTCGTTGTTGACCGTTAGATCAAATCGGAAGGAGTTGATGAGAGATGAGAAGAGTGTGATTCGATTGGTGCAAATGTTGGATCCGAGGAATGAGAGGATGAATAATAAAGAGCTTCCGGTGATGGTTGTGACGGCGATTTTATCAGGTGGAAGTTATGCGGCGAGGACGAAGTTGATTGGTTTAGGAGCTGATCGTTATCTTCAATCTCTGGAGGAAATGGAAGTTCCCGGTGCTAAGAAAGCGGTTCAGAGACTCGCCGCCGGTAATCGGTTAAAGAGTATCTTCTTCACTAGACCATGGAAAGATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

580

Amino Acids

62.9

Weight (kDa)

8.54

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7032	PF23005	28 - 136	3e-32	Domain of unknown function (DUF7032)
ARM_PUB	PF25598	175 - 356	1.4e-09	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	187 - 396	1.3e-17	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05810 AT2G05810
fragaria_vesca	FvH4_1g21781 FvH4_3g23060 FvH4_6g42120
malus_domestica	MD09G1114400.v1.1 MD17G1106100.v1.1
prunus_persica	Prupe.3G210100_v2.0.a1
pyrus_communis	pycom09g03890 pycom17g09870
rosa_chinensis	RchiOBHm_Chr2g0158031
rosa_laevigata	RLG00000005113 RLG00000009946 RLG00000011412 RLG00000014991 RLG00000021051 RLG00000034476
rosa_multiflora	Rmu_co8383981.1_g000001 Rmu_sc0000419.1_g000016 Rmu_sc0004064.1_g000016 Rmu_sc0009909.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091730 Rroxscaffold_7G00168560
rosa_rugosa	Rorug02G0465300
rosa_samantha	Rh2AG531300 Rh2BG545800 Rh2CG515600 Rh2DG553900 Rh3AG074100 Rh3CG075500 Rh4AG058000 Rh4BG056800 Rh6AG401300 Rh6CG415200
rosa_wichuraiana	Rw2G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1040
AclWI	GGATC	7 cut(s)	150, 393, 775, 815, 898, 1505, 1518
AcsI	RAATTY	2 cut(s)	1042, 1312
AcuI	CTGAAG	1 cut(s)	990
AfaI	GTAC	2 cut(s)	903, 1026
AfiI	CCNNNNNNNGG	1 cut(s)	1698
AgeI	ACCGGT	1 cut(s)	985
AgsI	TTSAA	8 cut(s)	526, 554, 781, 806, 947, 1136, 1286, 1634
AjuI	GAANNNNNNNTTGG	2 cut(s)	591, 623
AleI	CACNNNNGTG	1 cut(s)	375
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	5 cut(s)	28, 480, 506, 682, 1675
AlwI	GGATC	7 cut(s)	150, 393, 775, 815, 898, 1505, 1518
AlwNI	CAGNNNCTG	1 cut(s)	1120
Ama87I	CYCGRG	1 cut(s)	706
ApeKI	GCWGC	1 cut(s)	791
ApoI	RAATTY	2 cut(s)	1042, 1312
ArsI	GACNNNNNNTTYG	2 cut(s)	1329, 1361
AseI	ATTAAT	1 cut(s)	869
AsiGI	ACCGGT	1 cut(s)	985
Asp700I	GAANNNNTTC	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	701
AspS9I	GGNCC	1 cut(s)	740
AsuC2I	CCSGG	1 cut(s)	1659
AsuHPI	GGTGA	8 cut(s)	109, 195, 553, 632, 765, 1082, 1265, 1561
AsuII	TTCGAA	1 cut(s)	723
AvaI	CYCGRG	1 cut(s)	706
AvaII	GGWCC	1 cut(s)	740
BamHI	GGATCC	1 cut(s)	1510
BarI	GAAGNNNNNNTAC	2 cut(s)	966, 998
Bbv12I	GWGCWC	1 cut(s)	663
BbvI	GCAGC	1 cut(s)	803
BccI	CCATC	4 cut(s)	434, 645, 651, 1546
BceAI	ACGGC	5 cut(s)	5, 659, 926, 1328, 1578
BcnI	CCSGG	1 cut(s)	1659
BcoDI	GTCTC	5 cut(s)	28, 480, 506, 682, 1675
BfaI	CTAG	4 cut(s)	539, 758, 1212, 1722
BfoI	RGCGCY	1 cut(s)	702
BglII	AGATCT	2 cut(s)	1188, 1290
BisI	GCNGC	8 cut(s)	18, 672, 792, 939, 1413, 1425, 1590, 1689
BlsI	GCNGC	8 cut(s)	19, 673, 793, 940, 1414, 1426, 1591, 1690
Bme1390I	CCNGG	1 cut(s)	1659
Bme18I	GGWCC	1 cut(s)	740
BmeT110I	CYCGRG	1 cut(s)	706
BmgT120I	GGNCC	1 cut(s)	740
BmiI	GGNNCC	1 cut(s)	1512
BmrFI	CCNGG	1 cut(s)	1659
BmsI	GCATC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	1661
Bpu14I	TTCGAA	1 cut(s)	723
BpuMI	CCSGG	1 cut(s)	1659
BsaBI	GATNNNNATC	3 cut(s)	636, 889, 1626
BsaI	GGTCTC	1 cut(s)	480
BsaJI	CCNNGG	3 cut(s)	1197, 1514, 1727
BsaWI	WCCGGW	7 cut(s)	311, 401, 764, 985, 1010, 1067, 1546
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 107, 278, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	1698
Bse118I	RCCGGY	3 cut(s)	985, 1393, 1691
Bse1I	ACTGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	468
Bse8I	GATNNNNATC	3 cut(s)	636, 889, 1626
BseDI	CCNNGG	3 cut(s)	1197, 1514, 1727
BseGI	GGATG	3 cut(s)	4, 643, 1533
BseJI	GATNNNNATC	3 cut(s)	636, 889, 1626
BseLI	CCNNNNNNNGG	1 cut(s)	1698
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	4 cut(s)	409, 510, 858, 1199
BseNI	ACTGG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	803
Bsh1236I	CGCG	1 cut(s)	1040
Bsh1285I	CGRYCG	1 cut(s)	1161
BshTI	ACCGGT	1 cut(s)	985
BsiEI	CGRYCG	1 cut(s)	1161
BsiHKAI	GWGCWC	1 cut(s)	663
BsiHKCI	CYCGRG	1 cut(s)	706
BslI	CCNNNNNNNGG	1 cut(s)	1698
BsmAI	GTCTC	5 cut(s)	28, 480, 506, 682, 1675
BsmBI	CGTCTC	3 cut(s)	28, 506, 682
Bso31I	GGTCTC	1 cut(s)	480
BsoBI	CYCGRG	1 cut(s)	706
Bsp119I	TTCGAA	1 cut(s)	723
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp19I	CCATGG	2 cut(s)	1197, 1727
BspCNI	CTCAG	4 cut(s)	408, 511, 857, 1198
BspFNI	CGCG	1 cut(s)	1040
BspLI	GGNNCC	1 cut(s)	1512
BspPI	GGATC	7 cut(s)	150, 393, 775, 815, 898, 1505, 1518
BspT104I	TTCGAA	1 cut(s)	723
BspTNI	GGTCTC	1 cut(s)	480
BsrDI	GCAATG	1 cut(s)	468
BsrFI	RCCGGY	3 cut(s)	985, 1393, 1691
BsrI	ACTGG	1 cut(s)	215
BssAI	RCCGGY	3 cut(s)	985, 1393, 1691
BssECI	CCNNGG	3 cut(s)	1197, 1514, 1727
BssT1I	CCWWGG	2 cut(s)	1197, 1727
Bst4CI	ACNGT	9 cut(s)	121, 141, 718, 777, 865, 1169, 1207, 1331, 1444
Bst6I	CTCTTC	9 cut(s)	115, 170, 193, 280, 361, 497, 552, 630, 1475
BstBI	TTCGAA	1 cut(s)	723
BstC8I	GCNNGC	2 cut(s)	663, 1176
BstDEI	CTNAG	6 cut(s)	395, 519, 616, 844, 1185, 1665
BstDSI	CCRYGG	2 cut(s)	1197, 1727
BstF5I	GGATG	3 cut(s)	4, 643, 1533
BstFNI	CGCG	1 cut(s)	1040
BstH2I	RGCGCY	1 cut(s)	702
BstHHI	GCGC	1 cut(s)	701
BstMAI	GTCTC	5 cut(s)	28, 480, 506, 682, 1675
BstMCI	CGRYCG	1 cut(s)	1161
BstMWI	GCNNNNNNNGC	8 cut(s)	671, 797, 806, 815, 824, 845, 1421, 1670
BstSCI	CCNGG	1 cut(s)	1657
BstUI	CGCG	1 cut(s)	1040
BstV1I	GCAGC	1 cut(s)	803
BstX2I	RGATCY	6 cut(s)	398, 767, 890, 1188, 1290, 1510
BstXI	CCANNNNNNTGG	1 cut(s)	512
BstYI	RGATCY	6 cut(s)	398, 767, 890, 1188, 1290, 1510
BtgI	CCRYGG	2 cut(s)	1197, 1727
BtgZI	GCGATG	2 cut(s)	898, 919
BtsCI	GGATG	3 cut(s)	4, 643, 1533
BtsIMutI	CAGTG	2 cut(s)	208, 1165
Cac8I	GCNNGC	2 cut(s)	663, 1176
CaiI	CAGNNNCTG	1 cut(s)	1120
CfoI	GCGC	1 cut(s)	701
Cfr10I	RCCGGY	3 cut(s)	985, 1393, 1691
Cfr13I	GGNCC	1 cut(s)	740
Csp6I	GTAC	2 cut(s)	902, 1025
CspAI	ACCGGT	1 cut(s)	985
CviAII	CATG	3 cut(s)	328, 1198, 1728
CviQI	GTAC	2 cut(s)	902, 1025
DdeI	CTNAG	6 cut(s)	395, 519, 616, 844, 1185, 1665
Eam1104I	CTCTTC	9 cut(s)	115, 170, 193, 280, 361, 497, 552, 630, 1475
EarI	CTCTTC	9 cut(s)	115, 170, 193, 280, 361, 497, 552, 630, 1475
EciI	GGCGGA	2 cut(s)	4, 747
Eco130I	CCWWGG	2 cut(s)	1197, 1727
Eco31I	GGTCTC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	740
Eco57I	CTGAAG	1 cut(s)	990
Eco88I	CYCGRG	1 cut(s)	706
EcoT14I	CCWWGG	2 cut(s)	1197, 1727
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	1197, 1727
Esp3I	CGTCTC	3 cut(s)	28, 506, 682
FaeI	CATG	3 cut(s)	331, 1201, 1731
FalI	AAGNNNNNCTT	2 cut(s)	1697, 1729
FatI	CATG	3 cut(s)	327, 1197, 1727
FauI	CCCGC	1 cut(s)	1390
Fnu4HI	GCNGC	8 cut(s)	18, 672, 792, 939, 1413, 1425, 1590, 1689
FokI	GGATG	2 cut(s)	630, 1540
Fsp4HI	GCNGC	8 cut(s)	18, 672, 792, 939, 1413, 1425, 1590, 1689
FspBI	CTAG	4 cut(s)	539, 758, 1212, 1722
GlaI	GCGC	1 cut(s)	700
GluI	GCNGC	8 cut(s)	18, 672, 792, 939, 1413, 1425, 1590, 1689
GsuI	CTGGAG	1 cut(s)	1661
HaeII	RGCGCY	1 cut(s)	702
HhaI	GCGC	1 cut(s)	701
Hin1II	CATG	3 cut(s)	331, 1201, 1731
Hin6I	GCGC	1 cut(s)	699
HinP1I	GCGC	1 cut(s)	699
HincII	GTYRAC	3 cut(s)	73, 687, 1440
HindII	GTYRAC	3 cut(s)	73, 687, 1440
HindIII	AAGCTT	1 cut(s)	876
HpaI	GTTAAC	1 cut(s)	687
HphI	GGTGA	8 cut(s)	109, 195, 553, 632, 765, 1082, 1265, 1561
Hpy166II	GTNNAC	4 cut(s)	73, 320, 687, 1440
Hpy188III	TCNNGA	7 cut(s)	539, 629, 708, 888, 1136, 1151, 1640
Hpy8I	GTNNAC	4 cut(s)	73, 320, 687, 1440
Hpy99I	CGWCG	3 cut(s)	1331, 1349, 1420
HpyAV	CCTTC	7 cut(s)	139, 255, 484, 593, 968, 1292, 1453
HpyCH4III	ACNGT	9 cut(s)	121, 141, 718, 777, 865, 1169, 1207, 1331, 1444
HpyCH4IV	ACGT	2 cut(s)	87, 1275
HpyCH4V	TGCA	3 cut(s)	4, 331, 1501
HpyF10VI	GCNNNNNNNGC	8 cut(s)	671, 797, 806, 815, 824, 845, 1421, 1670
HpyF3I	CTNAG	6 cut(s)	395, 519, 616, 844, 1185, 1665
HpySE526I	ACGT	2 cut(s)	87, 1275
Hsp92II	CATG	3 cut(s)	331, 1201, 1731
HspAI	GCGC	1 cut(s)	699
KspAI	GTTAAC	1 cut(s)	687
LmnI	GCTCC	5 cut(s)	58, 299, 515, 977, 1616
Lsp1109I	GCAGC	1 cut(s)	803
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	4 cut(s)	539, 758, 1212, 1722
MaeII	ACGT	2 cut(s)	87, 1275
MaeIII	GTNAC	8 cut(s)	213, 377, 611, 619, 859, 1331, 1401, 1558
MflI	RGATCY	6 cut(s)	398, 767, 890, 1188, 1290, 1510
MhlI	GDGCHC	1 cut(s)	663
MluCI	AATT	3 cut(s)	1042, 1256, 1312
MlyI	GAGTC	2 cut(s)	698, 1677
MmeI	TCCRAC	5 cut(s)	85, 289, 309, 1021, 1488
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	546
MseI	TTAA	7 cut(s)	686, 869, 1004, 1316, 1358, 1376, 1703
MslI	CAYNNNNRTG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	1659
MvnI	CGCG	1 cut(s)	1040
MwoI	GCNNNNNNNGC	8 cut(s)	671, 797, 806, 815, 824, 845, 1421, 1670
NciI	CCSGG	1 cut(s)	1659
NcoI	CCATGG	2 cut(s)	1197, 1727
NlaIII	CATG	3 cut(s)	331, 1201, 1731
NlaIV	GGNNCC	1 cut(s)	1512
NmuCI	GTSAC	3 cut(s)	213, 377, 1558
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	723
OliI	CACNNNNGTG	1 cut(s)	375
PaeR7I	CTCGAG	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	1 cut(s)	1424
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	9 cut(s)	200, 542, 585, 1117, 1123, 1139, 1369, 1382, 1489
PinAI	ACCGGT	1 cut(s)	985
PkrI	GCNGC	8 cut(s)	19, 673, 793, 940, 1414, 1426, 1591, 1690
Ple19I	CGATCG	1 cut(s)	1161
PleI	GAGTC	2 cut(s)	698, 1677
PpsI	GAGTC	2 cut(s)	698, 1677
PshBI	ATTAAT	1 cut(s)	869
PspN4I	GGNNCC	1 cut(s)	1512
PspPI	GGNCC	1 cut(s)	740
PstNI	CAGNNNCTG	1 cut(s)	1120
PsuI	RGATCY	6 cut(s)	398, 767, 890, 1188, 1290, 1510
PvuI	CGATCG	1 cut(s)	1161
RsaI	GTAC	2 cut(s)	903, 1026
RsaNI	GTAC	2 cut(s)	902, 1025
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	7 cut(s)	686, 869, 1004, 1316, 1358, 1376, 1703
SatI	GCNGC	8 cut(s)	18, 672, 792, 939, 1413, 1425, 1590, 1689
Sau96I	GGNCC	1 cut(s)	740
SchI	GAGTC	2 cut(s)	698, 1677
ScrFI	CCNGG	1 cut(s)	1659
SduI	GDGCHC	1 cut(s)	663
SfaNI	GCATC	1 cut(s)	13
Sfr274I	CTCGAG	1 cut(s)	706
SfuI	TTCGAA	1 cut(s)	723
SinI	GGWCC	1 cut(s)	740
SlaI	CTCGAG	1 cut(s)	706
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	706
SmoI	CTYRAG	1 cut(s)	706
Sse9I	AATT	3 cut(s)	1042, 1256, 1312
SspMI	CTAG	4 cut(s)	539, 758, 1212, 1722
StyD4I	CCNGG	1 cut(s)	1657
StyI	CCWWGG	2 cut(s)	1197, 1727
TaaI	ACNGT	9 cut(s)	121, 141, 718, 777, 865, 1169, 1207, 1331, 1444
TaiI	ACGT	2 cut(s)	90, 1278
TaqI	TCGA	8 cut(s)	342, 695, 707, 723, 873, 1161, 1310, 1492
TasI	AATT	3 cut(s)	1042, 1256, 1312
TatI	WGTACW	1 cut(s)	901
TauI	GCSGC	7 cut(s)	20, 674, 941, 1415, 1427, 1592, 1691
TfiI	GAWTC	9 cut(s)	200, 542, 585, 1117, 1123, 1139, 1369, 1382, 1489
Tru1I	TTAA	7 cut(s)	686, 869, 1004, 1316, 1358, 1376, 1703
Tru9I	TTAA	7 cut(s)	686, 869, 1004, 1316, 1358, 1376, 1703
TscAI	CASTG	2 cut(s)	215, 1172
TseFI	GTSAC	3 cut(s)	213, 377, 1558
TseI	GCWGC	1 cut(s)	791
Tsp45I	GTSAC	3 cut(s)	213, 377, 1558
TspGWI	ACGGA	5 cut(s)	113, 644, 867, 1284, 1433
TspRI	CASTG	2 cut(s)	215, 1172
VpaK11BI	GGWCC	1 cut(s)	740
VspI	ATTAAT	1 cut(s)	869
XapI	RAATTY	2 cut(s)	1042, 1312
XbaI	TCTAGA	1 cut(s)	538
XcmI	CCANNNNNNNNNTGG	1 cut(s)	831
XhoI	CTCGAG	1 cut(s)	706
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	4 cut(s)	539, 758, 1212, 1722
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.