RLG00000009946

Armadillo/beta-catenin-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003535
Physical Location & Seq
Forward (+)
60855675 .. 60856390
716 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009946

Sequence Viewer

Length: 543 bp
ATGTCGACGTCGTTCACAGGCGGGAAGCTCCACATGCAAAGTGACCTCAACATGGCCGCCGAGTCCCTCACCAACCAAGTCCGCGACCTAGACTTGCTGCTCAGATTTGACGTGCTCCACCAGTCAAGTGCCATCATTTTGTCGCATCCAGGTTCCAGGTCGGATAAAGAGAATCTTAGCTTCTTTATCCTGGACCTCTTCACCCGGCTGCAAATCGGCGGCATCAAGTTCAAGAAGAAGGCGCTAGAGTCTCTACTTCAGCTCCGCGAAGACTATGACAAGGCCAGCTGCTCAATTTCCACAACCAGCCTTGGGTGCGAGAACAAGCCACCTCTGCAGTCTCGCTCCTCGCCGCCACAAATGATGAGTCGCGCAAGCTTTAGCCGGTTCCTAGTTCTCCAACGTTGTTCAAGGCCAATTCGATTGTGTTGGTCAGTCAAGATGGGCTCCGACTTTGCTTCTGGTGGTGACTTTTCTGGCCCCGTCGTGCGGAAGAATCAGTTTCGAGGGGCACTGTTCAAGTATGGCCCCAAACCAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

181

Amino Acids

20.1

Weight (kDa)

9.81

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 3 - 36 3.2e-07 Domain of unknown function (DUF7032)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 11
AccI GTMKAC 1 cut(s) 5
AccII CGCG 3 cut(s) 84, 267, 372
AciI CCGC 7 cut(s) 21, 57, 82, 219, 265, 353, 490
AclI AACGTT 1 cut(s) 403
AcoI YGGCCR 1 cut(s) 54
AcuI CTGAAG 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 8
AfiI CCNNNNNNNGG 3 cut(s) 52, 312, 489
AgsI TTSAA 3 cut(s) 232, 411, 520
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 3 cut(s) 148, 155, 189
AluBI AGCT 5 cut(s) 28, 180, 262, 288, 378
AluI AGCT 5 cut(s) 28, 180, 262, 288, 378
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 2 cut(s) 255, 345
AoxI GGCC 5 cut(s) 54, 282, 413, 478, 526
ApeKI GCWGC 3 cut(s) 97, 208, 288
ArsI GACNNNNNNTTYG 2 cut(s) 352, 384
AspLEI GCGC 2 cut(s) 244, 374
AspS9I GGNCC 3 cut(s) 193, 479, 527
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 3 cut(s) 61, 193, 479
AvaII GGWCC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 514
BanII GRGCYC 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 3 cut(s) 84, 195, 275
BccI CCATC 2 cut(s) 140, 436
BciT130I CCWGG 3 cut(s) 150, 157, 191
BcnI CCSGG 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 255, 345
BfaI CTAG 3 cut(s) 89, 245, 392
BfmI CTRYAG 1 cut(s) 335
BfoI RGCGCY 1 cut(s) 245
BisI GCNGC 6 cut(s) 57, 98, 209, 220, 289, 353
BlsI GCNGC 6 cut(s) 58, 99, 210, 221, 290, 354
Bme1390I CCNGG 4 cut(s) 150, 157, 191, 205
Bme18I GGWCC 1 cut(s) 193
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 3 cut(s) 193, 479, 527
BmiI GGNNCC 5 cut(s) 154, 389, 448, 481, 529
BmrFI CCNGG 4 cut(s) 150, 157, 191, 205
BmsI GCATC 2 cut(s) 154, 231
BpiI GAAGAC 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 205
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 312, 489
Bse118I RCCGGY 1 cut(s) 384
Bse1I ACTGG 1 cut(s) 121
BseBI CCWGG 3 cut(s) 150, 157, 191
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 3 cut(s) 52, 312, 489
BseMII CTCAG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 337
BseSI GKGCMC 1 cut(s) 514
BseXI GCAGC 3 cut(s) 84, 195, 275
Bsh1236I CGCG 3 cut(s) 84, 267, 372
BshFI GGCC 5 cut(s) 56, 284, 415, 480, 528
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 2 cut(s) 205, 385
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 3 cut(s) 52, 312, 489
BsmAI GTCTC 2 cut(s) 255, 345
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 5 cut(s) 56, 284, 415, 480, 528
Bsp1286I GDGCHC 3 cut(s) 117, 449, 514
BspACI CCGC 7 cut(s) 21, 57, 82, 219, 265, 353, 490
BspANI GGCC 5 cut(s) 56, 284, 415, 480, 528
BspCNI CTCAG 1 cut(s) 114
BspFNI CGCG 3 cut(s) 84, 267, 372
BspLI GGNNCC 5 cut(s) 154, 389, 448, 481, 529
BspMAI CTGCAG 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 384
BsrI ACTGG 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 310
Bst2UI CCWGG 3 cut(s) 150, 157, 191
Bst4CI ACNGT 1 cut(s) 516
Bst6I CTCTTC 1 cut(s) 203
BstACI GRCGYC 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 286, 376
BstDEI CTNAG 2 cut(s) 101, 176
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 3 cut(s) 84, 267, 372
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 2 cut(s) 244, 374
BstMAI GTCTC 2 cut(s) 255, 345
BstMWI GCNNNNNNNGC 3 cut(s) 34, 315, 334
BstNI CCWGG 3 cut(s) 150, 157, 191
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 4 cut(s) 148, 155, 189, 203
BstSFI CTRYAG 1 cut(s) 335
BstSLI GKGCMC 1 cut(s) 514
BstUI CGCG 3 cut(s) 84, 267, 372
BstV1I GCAGC 3 cut(s) 84, 195, 275
BstV2I GAAGAC 1 cut(s) 276
BsuRI GGCC 5 cut(s) 56, 284, 415, 480, 528
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 512
Cac8I GCNNGC 2 cut(s) 286, 376
CfoI GCGC 2 cut(s) 244, 374
Cfr10I RCCGGY 1 cut(s) 384
Cfr13I GGNCC 3 cut(s) 193, 479, 527
CviAII CATG 2 cut(s) 34, 52
DdeI CTNAG 2 cut(s) 101, 176
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 242
EcoRII CCWGG 3 cut(s) 148, 155, 189
EcoT14I CCWWGG 1 cut(s) 310
EcoT38I GRGCYC 1 cut(s) 449
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 2 cut(s) 37, 55
FaiI YATR 4 cut(s) 35, 53, 276, 525
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 1 cut(s) 49
FatI CATG 2 cut(s) 33, 51
FauI CCCGC 1 cut(s) 14
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 6 cut(s) 57, 98, 209, 220, 289, 353
FokI GGATG 1 cut(s) 132
FriOI GRGCYC 1 cut(s) 449
Fsp4HI GCNGC 6 cut(s) 57, 98, 209, 220, 289, 353
FspBI CTAG 3 cut(s) 89, 245, 392
GlaI GCGC 2 cut(s) 243, 373
GluI GCNGC 6 cut(s) 57, 98, 209, 220, 289, 353
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 5 cut(s) 56, 284, 415, 480, 528
HapII CCGG 2 cut(s) 205, 385
HhaI GCGC 2 cut(s) 244, 374
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 2 cut(s) 37, 55
Hin6I GCGC 2 cut(s) 242, 372
HinP1I GCGC 2 cut(s) 242, 372
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 376
HinfI GANTC 5 cut(s) 62, 172, 248, 367, 496
HpaII CCGG 2 cut(s) 205, 385
HphI GGTGA 3 cut(s) 61, 193, 479
Hpy166II GTNNAC 2 cut(s) 6, 15
Hpy188I TCNGA 3 cut(s) 104, 163, 451
Hpy188III TCNNGA 2 cut(s) 232, 439
Hpy8I GTNNAC 2 cut(s) 6, 15
Hpy99I CGWCG 3 cut(s) 10, 13, 488
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 516
HpyCH4IV ACGT 3 cut(s) 8, 111, 403
HpyCH4V TGCA 3 cut(s) 37, 211, 337
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 315, 334
HpyF3I CTNAG 2 cut(s) 101, 176
HpySE526I ACGT 3 cut(s) 8, 111, 403
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 2 cut(s) 37, 55
HspAI GCGC 2 cut(s) 242, 372
LmnI GCTCC 5 cut(s) 33, 120, 267, 350, 452
Lsp1109I GCAGC 3 cut(s) 84, 195, 275
LweI GCATC 2 cut(s) 154, 231
MaeI CTAG 3 cut(s) 89, 245, 392
MaeII ACGT 3 cut(s) 8, 111, 403
MaeIII GTNAC 2 cut(s) 41, 467
MboII GAAGA 4 cut(s) 190, 247, 281, 505
MhlI GDGCHC 3 cut(s) 117, 449, 514
MluCI AATT 3 cut(s) 294, 417, 537
MlyI GAGTC 3 cut(s) 71, 257, 376
MmeI TCCRAC 3 cut(s) 141, 424, 474
MnlI CCTC 6 cut(s) 56, 77, 206, 342, 358, 500
MspA1I CMGCKG 1 cut(s) 288
MspI CCGG 2 cut(s) 205, 385
MspR9I CCNGG 4 cut(s) 150, 157, 191, 205
MvaI CCWGG 3 cut(s) 150, 157, 191
MvnI CGCG 3 cut(s) 84, 267, 372
MwoI GCNNNNNNNGC 3 cut(s) 34, 315, 334
NciI CCSGG 1 cut(s) 205
NlaIII CATG 2 cut(s) 37, 55
NlaIV GGNNCC 5 cut(s) 154, 389, 448, 481, 529
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 2 cut(s) 41, 467
NspI RCATGY 1 cut(s) 37
PfeI GAWTC 2 cut(s) 172, 496
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 6 cut(s) 58, 99, 210, 221, 290, 354
PleI GAGTC 3 cut(s) 70, 256, 375
PpsI GAGTC 3 cut(s) 70, 256, 375
Psp1406I AACGTT 1 cut(s) 403
Psp6I CCWGG 3 cut(s) 148, 155, 189
PspGI CCWGG 3 cut(s) 148, 155, 189
PspN4I GGNNCC 5 cut(s) 154, 389, 448, 481, 529
PspPI GGNCC 3 cut(s) 193, 479, 527
PstI CTGCAG 1 cut(s) 339
PvuII CAGCTG 1 cut(s) 288
SalI GTCGAC 1 cut(s) 4
SatI GCNGC 6 cut(s) 57, 98, 209, 220, 289, 353
Sau96I GGNCC 3 cut(s) 193, 479, 527
SchI GAGTC 3 cut(s) 71, 257, 376
ScrFI CCNGG 4 cut(s) 150, 157, 191, 205
SduI GDGCHC 3 cut(s) 117, 449, 514
SfaNI GCATC 2 cut(s) 154, 231
SfcI CTRYAG 1 cut(s) 335
SinI GGWCC 1 cut(s) 193
Sse9I AATT 3 cut(s) 294, 417, 537
SsiI CCGC 7 cut(s) 21, 57, 82, 219, 265, 353, 490
SspMI CTAG 3 cut(s) 89, 245, 392
StyD4I CCNGG 4 cut(s) 148, 155, 189, 203
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 516
TaiI ACGT 3 cut(s) 11, 114, 406
TaqI TCGA 3 cut(s) 5, 421, 505
TasI AATT 3 cut(s) 294, 417, 537
TauI GCSGC 3 cut(s) 59, 222, 355
TfiI GAWTC 2 cut(s) 172, 496
TscAI CASTG 1 cut(s) 519
TseFI GTSAC 2 cut(s) 41, 467
TseI GCWGC 3 cut(s) 97, 208, 288
Tsp45I GTSAC 2 cut(s) 41, 467
TspRI CASTG 1 cut(s) 519
VpaK11BI GGWCC 1 cut(s) 193
XceI RCATGY 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 3 cut(s) 89, 245, 392
ZraI GACGTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.