FvH4_3g23060

Armadillo/beta-catenin-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003535
Physical Location & Seq
Forward (+)
16155658 .. 16158208
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23060.t1

Sequence Viewer

Length: 780 bp
ATGAGACGTGATATGCCCGAAGACCCGACCCAATGCAGACCTCCTCCTCCTCCTCCCCACTCCAAACCCTCCTCGACCTCATCAACGAGACCCTCTCCCTCCTCCTCGGCACCTCTCTCACCGTCTGATCCTTCCCCGTGCTGGCACCCCCTCCGCTCCAACCTCTTCTCCCTCCACTCCTCCATCTCCTCCGTCTCCGACTCCCCCCACTGGGCCGAGAATCCTCTCCTCTACACTCTCCTCCCCAACCTCCTCTCCACTCTCCAGCGCCTTAAGGCTCTCTCCGACCAATGCAACGACTCGTCATTTTCCGGCGGGAAGCTCCACATGCAGAGCGACCTAGACATGGCCGCCGCCTCCCTCTCTAACCTCCTCTGCGACCTCGACCTCCTCCTCAGATCCGGCGTCCTCCACCAGTCCAACGCCATCGTTCTCTCCCACCCGGGTCCCGGCTCCGACAAAGAGAATCTCACCTTCTTCATCCACGACCTCTTCACCCGCCTCCAAATCGGCGGCGTCAAGTTCAAGAACAAGGCTCTCGAGTCCCTCCTTCAGCTTATCCAAGACAACGACAAGGCCGCCGGACTCGTCGCCAAAGAAGCCAACGTGGCCTATCTAATTCACCTCCTCGATTTCCACACCCAGCCCTGGGTCCGCGAACAGGCCACCTCCACCGTCTCGTCTATCCCCAACCGTAGCTTCCTAGCAGGAATACTGTGCAGTCCTCGCCGACGAGCTCCATCACGCCAAGATCTCGACGGTCAAGATGTGCTAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

260

Amino Acids

28.28

Weight (kDa)

6.79

Isoelectric Point (pI)

66.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 48 - 136 1.6e-24 Domain of unknown function (DUF7032)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 109, 144
AccBSI CCGCTC 1 cut(s) 156
AccII CGCG 1 cut(s) 657
AciI CCGC 8 cut(s) 154, 315, 351, 354, 499, 513, 579, 655
AclWI GGATC 2 cut(s) 122, 393
AcoI YGGCCR 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 536
AcyI GRCGYC 2 cut(s) 405, 516
AfiI CCNNNNNNNGG 8 cut(s) 141, 210, 211, 346, 449, 648, 649, 661
AflII CTTAAG 1 cut(s) 272
AgsI TTSAA 1 cut(s) 526
AjiI CACGTC 1 cut(s) 8
AjnI CCWGG 1 cut(s) 647
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AluBI AGCT 4 cut(s) 322, 556, 699, 737
AluI AGCT 4 cut(s) 322, 556, 699, 737
Alw21I GWGCWC 1 cut(s) 739
Alw26I GTCTC 3 cut(s) 82, 199, 682
AlwI GGATC 2 cut(s) 122, 393
Ama87I CYCGRG 2 cut(s) 442, 539
AoxI GGCC 5 cut(s) 213, 348, 576, 609, 663
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 3 cut(s) 213, 446, 652
AsuC2I CCSGG 3 cut(s) 443, 444, 450
AsuHPI GGTGA 4 cut(s) 111, 463, 487, 614
AvaI CYCGRG 2 cut(s) 442, 539
AvaII GGWCC 2 cut(s) 446, 652
BanI GGYRCC 2 cut(s) 109, 144
BanII GRGCYC 1 cut(s) 739
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 739
BccI CCATC 3 cut(s) 191, 434, 748
BciT130I CCWGG 1 cut(s) 649
BcnI CCSGG 3 cut(s) 443, 444, 450
BcoDI GTCTC 3 cut(s) 82, 199, 682
BfaI CTAG 3 cut(s) 341, 704, 773
BfoI RGCGCY 1 cut(s) 271
BfrI CTTAAG 1 cut(s) 272
BglI GCCNNNNNGGC 1 cut(s) 608
BglII AGATCT 1 cut(s) 751
BisI GCNGC 4 cut(s) 351, 354, 514, 579
BlsI GCNGC 4 cut(s) 352, 355, 515, 580
Bme1390I CCNGG 4 cut(s) 443, 444, 450, 649
Bme18I GGWCC 2 cut(s) 446, 652
BmeT110I CYCGRG 2 cut(s) 442, 539
BmgBI CACGTC 1 cut(s) 8
BmgT120I GGNCC 3 cut(s) 213, 446, 652
BmiI GGNNCC 6 cut(s) 111, 146, 447, 448, 454, 653
BmrFI CCNGG 4 cut(s) 443, 444, 450, 649
BmrI ACTGGG 1 cut(s) 220
BmuI ACTGGG 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 27
BplI GAGNNNNNCTC 2 cut(s) 79, 111
BpmI CTGGAG 1 cut(s) 248
BpuMI CCSGG 3 cut(s) 443, 444, 450
BsaHI GRCGYC 2 cut(s) 405, 516
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 4 cut(s) 105, 442, 647, 648
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 239, 269
Bsc4I CCNNNNNNNGG 8 cut(s) 141, 210, 211, 346, 449, 648, 649, 661
Bse1I ACTGG 2 cut(s) 215, 415
BseBI CCWGG 1 cut(s) 649
BseDI CCNNGG 4 cut(s) 105, 442, 647, 648
BseGI GGATG 1 cut(s) 480
BseLI CCNNNNNNNGG 8 cut(s) 141, 210, 211, 346, 449, 648, 649, 661
BseMII CTCAG 1 cut(s) 409
BseNI ACTGG 2 cut(s) 215, 415
BseYI CCCAGC 1 cut(s) 642
BsgI GTGCAG 1 cut(s) 739
Bsh1236I CGCG 1 cut(s) 657
BshFI GGCC 5 cut(s) 215, 350, 578, 611, 665
BshNI GGYRCC 2 cut(s) 109, 144
BsiHKAI GWGCWC 1 cut(s) 739
BsiHKCI CYCGRG 2 cut(s) 442, 539
BsiSI CCGG 5 cut(s) 312, 402, 443, 450, 582
BslFI GGGAC 2 cut(s) 432, 529
BslI CCNNNNNNNGG 8 cut(s) 141, 210, 211, 346, 449, 648, 649, 661
BsmAI GTCTC 3 cut(s) 82, 199, 682
BsmBI CGTCTC 2 cut(s) 199, 682
BsmFI GGGAC 2 cut(s) 432, 529
BsnI GGCC 5 cut(s) 215, 350, 578, 611, 665
Bso31I GGTCTC 1 cut(s) 82
BsoBI CYCGRG 2 cut(s) 442, 539
Bsp1286I GDGCHC 1 cut(s) 739
Bsp143I GATC 3 cut(s) 127, 398, 751
BspACI CCGC 8 cut(s) 154, 315, 351, 354, 499, 513, 579, 655
BspANI GGCC 5 cut(s) 215, 350, 578, 611, 665
BspCNI CTCAG 1 cut(s) 408
BspFNI CGCG 1 cut(s) 657
BspLI GGNNCC 6 cut(s) 111, 146, 447, 448, 454, 653
BspPI GGATC 2 cut(s) 122, 393
BspT107I GGYRCC 2 cut(s) 109, 144
BspTI CTTAAG 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 82
BsrBI CCGCTC 1 cut(s) 156
BsrI ACTGG 2 cut(s) 215, 415
BssECI CCNNGG 4 cut(s) 105, 442, 647, 648
BssMI GATC 3 cut(s) 127, 398, 751
BssNI GRCGYC 2 cut(s) 405, 516
Bst2UI CCWGG 1 cut(s) 649
Bst4CI ACNGT 5 cut(s) 123, 676, 695, 717, 761
Bst6I CTCTTC 2 cut(s) 170, 497
BstACI GRCGYC 2 cut(s) 405, 516
BstAFI CTTAAG 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 395
BstF5I GGATG 1 cut(s) 480
BstFNI CGCG 1 cut(s) 657
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 3 cut(s) 130, 401, 754
BstMAI GTCTC 3 cut(s) 82, 199, 682
BstMBI GATC 3 cut(s) 127, 398, 751
BstMWI GCNNNNNNNGC 4 cut(s) 328, 599, 608, 726
BstNI CCWGG 1 cut(s) 649
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 4 cut(s) 441, 442, 448, 647
BstUI CGCG 1 cut(s) 657
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 2 cut(s) 398, 751
BstYI RGATCY 2 cut(s) 398, 751
BsuRI GGCC 5 cut(s) 215, 350, 578, 611, 665
BtrI CACGTC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 480
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 3 cut(s) 213, 446, 652
Cfr9I CCCGGG 1 cut(s) 442
CseI GACGC 2 cut(s) 394, 505
CviAII CATG 2 cut(s) 328, 346
DdeI CTNAG 1 cut(s) 395
DpnI GATC 3 cut(s) 129, 400, 753
DpnII GATC 3 cut(s) 127, 398, 751
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 2 cut(s) 170, 497
EarI CTCTTC 2 cut(s) 170, 497
Ecl136II GAGCTC 1 cut(s) 737
Eco24I GRGCYC 1 cut(s) 739
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 446, 652
Eco53kI GAGCTC 1 cut(s) 737
Eco57I CTGAAG 1 cut(s) 536
Eco88I CYCGRG 2 cut(s) 442, 539
EcoICRI GAGCTC 1 cut(s) 737
EcoO109I RGGNCCY 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 647
EcoT38I GRGCYC 1 cut(s) 739
Esp3I CGTCTC 2 cut(s) 199, 682
FaeI CATG 2 cut(s) 331, 349
FaiI YATR 3 cut(s) 14, 329, 347
FaqI GGGAC 2 cut(s) 432, 529
FatI CATG 2 cut(s) 327, 345
FauI CCCGC 2 cut(s) 308, 506
Fnu4HI GCNGC 4 cut(s) 351, 354, 514, 579
FokI GGATG 1 cut(s) 467
FriOI GRGCYC 1 cut(s) 739
Fsp4HI GCNGC 4 cut(s) 351, 354, 514, 579
FspBI CTAG 3 cut(s) 341, 704, 773
GlaI GCGC 1 cut(s) 269
GluI GCNGC 4 cut(s) 351, 354, 514, 579
GsaI CCCAGC 1 cut(s) 646
GsuI CTGGAG 1 cut(s) 248
HaeII RGCGCY 1 cut(s) 271
HaeIII GGCC 5 cut(s) 215, 350, 578, 611, 665
HapII CCGG 5 cut(s) 312, 402, 443, 450, 582
HgaI GACGC 2 cut(s) 394, 505
HhaI GCGC 1 cut(s) 270
Hin1I GRCGYC 2 cut(s) 405, 516
Hin1II CATG 2 cut(s) 331, 349
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HinfI GANTC 6 cut(s) 200, 220, 299, 466, 542, 585
HpaII CCGG 5 cut(s) 312, 402, 443, 450, 582
HphI GGTGA 4 cut(s) 111, 463, 487, 614
Hpy188I TCNGA 5 cut(s) 127, 199, 286, 398, 457
Hpy188III TCNNGA 4 cut(s) 526, 539, 755, 764
Hpy99I CGWCG 3 cut(s) 593, 735, 761
HpyAV CCTTC 3 cut(s) 141, 484, 560
HpyCH4III ACNGT 5 cut(s) 123, 676, 695, 717, 761
HpyCH4IV ACGT 2 cut(s) 7, 606
HpyCH4V TGCA 4 cut(s) 36, 294, 331, 720
HpyF10VI GCNNNNNNNGC 4 cut(s) 328, 599, 608, 726
HpyF3I CTNAG 1 cut(s) 395
HpySE526I ACGT 2 cut(s) 7, 606
Hsp92I GRCGYC 2 cut(s) 405, 516
Hsp92II CATG 2 cut(s) 331, 349
HspAI GCGC 1 cut(s) 268
KflI GGGWCCC 1 cut(s) 446
Kzo9I GATC 3 cut(s) 127, 398, 751
LmnI GCTCC 4 cut(s) 161, 327, 458, 742
MaeI CTAG 3 cut(s) 341, 704, 773
MaeII ACGT 2 cut(s) 7, 606
MalI GATC 3 cut(s) 129, 400, 753
MbiI CCGCTC 1 cut(s) 156
MboI GATC 3 cut(s) 127, 398, 751
MboII GAAGA 4 cut(s) 32, 157, 469, 484
MflI RGATCY 2 cut(s) 398, 751
MhlI GDGCHC 1 cut(s) 739
MluCI AATT 1 cut(s) 618
MlyI GAGTC 4 cut(s) 194, 293, 551, 579
MmeI TCCRAC 5 cut(s) 183, 222, 309, 444, 480
MseI TTAA 1 cut(s) 273
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 5 cut(s) 312, 402, 443, 450, 582
MspR9I CCNGG 4 cut(s) 443, 444, 450, 649
MvaI CCWGG 1 cut(s) 649
MvnI CGCG 1 cut(s) 657
MwoI GCNNNNNNNGC 4 cut(s) 328, 599, 608, 726
NciI CCSGG 3 cut(s) 443, 444, 450
NdeII GATC 3 cut(s) 127, 398, 751
NlaIII CATG 2 cut(s) 331, 349
NlaIV GGNNCC 6 cut(s) 111, 146, 447, 448, 454, 653
NmeAIII GCCGAG 2 cut(s) 86, 241
NspI RCATGY 1 cut(s) 331
PaeR7I CTCGAG 1 cut(s) 539
PasI CCCWGGG 1 cut(s) 648
PfeI GAWTC 2 cut(s) 220, 466
PkrI GCNGC 4 cut(s) 352, 355, 515, 580
PleI GAGTC 4 cut(s) 194, 293, 550, 579
PpsI GAGTC 4 cut(s) 194, 293, 550, 579
PpuMI RGGWCCY 1 cut(s) 446
Psp124BI GAGCTC 1 cut(s) 739
Psp5II RGGWCCY 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 647
PspFI CCCAGC 1 cut(s) 642
PspGI CCWGG 1 cut(s) 647
PspN4I GGNNCC 6 cut(s) 111, 146, 447, 448, 454, 653
PspPI GGNCC 3 cut(s) 213, 446, 652
PspPPI RGGWCCY 1 cut(s) 446
PsuI RGATCY 2 cut(s) 398, 751
SacI GAGCTC 1 cut(s) 739
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 4 cut(s) 351, 354, 514, 579
Sau3AI GATC 3 cut(s) 127, 398, 751
Sau96I GGNCC 3 cut(s) 213, 446, 652
SchI GAGTC 4 cut(s) 194, 293, 551, 579
ScrFI CCNGG 4 cut(s) 443, 444, 450, 649
SduI GDGCHC 1 cut(s) 739
Sfr274I CTCGAG 1 cut(s) 539
SinI GGWCC 2 cut(s) 446, 652
SlaI CTCGAG 1 cut(s) 539
SmaI CCCGGG 1 cut(s) 444
SmlI CTYRAG 2 cut(s) 272, 539
SmoI CTYRAG 2 cut(s) 272, 539
Sse9I AATT 1 cut(s) 618
SsiI CCGC 8 cut(s) 154, 315, 351, 354, 499, 513, 579, 655
SspMI CTAG 3 cut(s) 341, 704, 773
SstI GAGCTC 1 cut(s) 739
StyD4I CCNGG 4 cut(s) 441, 442, 448, 647
TaaI ACNGT 5 cut(s) 123, 676, 695, 717, 761
TaiI ACGT 2 cut(s) 10, 609
TaqI TCGA 5 cut(s) 74, 384, 540, 630, 756
TasI AATT 1 cut(s) 618
TauI GCSGC 4 cut(s) 353, 356, 516, 581
TfiI GAWTC 2 cut(s) 220, 466
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 469
TspGWI ACGGA 1 cut(s) 181
TspMI CCCGGG 1 cut(s) 442
TspRI CASTG 1 cut(s) 215
Vha464I CTTAAG 1 cut(s) 272
VpaK11BI GGWCC 2 cut(s) 446, 652
XceI RCATGY 1 cut(s) 331
XhoI CTCGAG 1 cut(s) 539
XmaI CCCGGG 1 cut(s) 442
XspI CTAG 3 cut(s) 341, 704, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.