Rorug02G0465300

Armadillo/beta-catenin-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003535
Physical Location & Seq
Forward (+)
59655226 .. 59657229
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0465300.1

Sequence Viewer

Length: 1455 bp
ATGAGTTACAAGGAAGTAGCTAAAAGGCCTCATGCAGTATGCATTCCAATGCCGTTTCAAAGCCATATAAAGGCAATGCTCAAACTAGCAAAACTCCTCCACCACAGAGGTCTTCATATAACCTTTGTCAACACAGTGTTCAACCATAAACGCTTTCTTCAATCTCTAGGACCTAACTCCCTTGATGGCTTGCCTGATTTTCGGTTCGAAACCATTCCAGATGGCCTTCCAAGTTCAGATGAAGGTGTGAATCAAGACGTCTATTTGCTTTGTGGTGCTGTCAGGAAAAATTTCTTAGCTCCGTTTCAAGACCTTCTCAAGAAACTCAATGAAACTGCAATTACTTCCCACAGTACTAATCCTCCGGTGACTCGGATAGTAGCAGACGGTTGGAATCCCTTTGTCTTCAGAGCAGCAGAAACAAATCGAATCCCTGTTACACTCTTCTTTCCTGTTGCTGCAAGCAGCTTCATGGGATTTGCACAATATCCCGCTTTGATGGAAAAAGGATTAGCACCACTCAAAGACGAGAGCTGTTTCACAAACGGGTATTTGGACAAGGTCATAGATTGGATTCCAGGACTGAAAGATATCCGATTAAGGGATCTCCCGACCAACTTTCAAGTCACAAATCCTGATGACGGCTTCTGGAACCTCTGCTTGGAAGCAATTGAAGGAGTTCAAAAAGCTGAAGCTGTTGTTCTTCATACTTATGATGCATTGGAGCATCATGTTTTGGAATCTCTCTCGTCTACGCTTCATCCACATGTTTATGCCATTGGCCCTCTCCAATTACTCCTTAATCAGATACCAGAACACCCTTTGAACCCTATGGGTTACAGTCTATGGAAAGAAGAAACCGAGTGCCTCCAATGGCTCAACTCCAAAGCGCCAAATTCAGTTGTTTATGTGAACTTTGGCAGTTTAACGATCATGACATCGAACAATCTTGTAGAGTTTGCTTGGGGACTTGCAAATACCAAGCTTCCGTTCTTTTGGGTAATTAGACCTGATTCAGTTGCTGGTGAATCGACTATTTTGCCACCAGAGTTTGTGGCTGAAACCAAACAAAGAGGTCTAATAGCAAGCTGGTGCCCACAAGAGCAAGTGCTTAACCACCCAGCAGTTGGAGGGTTTTTAACACACAGCGGGTGGAATTCAATGATTGAGAGTGTGACTGCAGGAGTGCCTATGTTGTGCTGGCCAGTCTGCGCGGACCAACAAACAAATACCTGGTCTGCTTGCAATGAATGGGGAATTGGCATTGAGATCATCAGTAATGAAGTGAAGAGAGACGAAATAGAGAAGCTTGTTAAACAGGTGATGGAGGGAGAGAAGGGTAAACAAATGAGAAATAAAGTGATGGAGTGGAAGCTACTTGCAGAAGAAGCAACCAGTCCACATGGTTCTTCATCCATAAACTTGGATAATTTAGTGAATCAAATGTTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

484

Amino Acids

54.21

Weight (kDa)

5.74

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 288 - 448 9.4e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 1092
AccB7I CCANNNNNTGG 1 cut(s) 1127
AccI GTMKAC 1 cut(s) 752
AccII CGCG 1 cut(s) 1214
AciI CCGC 3 cut(s) 492, 1149, 1214
AclWI GGATC 1 cut(s) 612
AcoI YGGCCR 1 cut(s) 1202
AcsI RAATTY 3 cut(s) 289, 895, 1156
AcuI CTGAAG 2 cut(s) 391, 711
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 5 cut(s) 70, 601, 641, 661, 1127
AflIII ACRYGT 1 cut(s) 766
AgsI TTSAA 9 cut(s) 59, 142, 161, 308, 623, 674, 683, 826, 1161
AjnI CCWGG 2 cut(s) 577, 1232
AjuI GAANNNNNNNTTGG 6 cut(s) 644, 676, 974, 1006, 1242, 1274
Alw26I GTCTC 1 cut(s) 1287
AlwI GGATC 1 cut(s) 612
AlwNI CAGNNNCTG 1 cut(s) 1022
AoxI GGCC 4 cut(s) 26, 223, 781, 1202
ApeKI GCWGC 3 cut(s) 413, 458, 465
ApoI RAATTY 3 cut(s) 289, 895, 1156
ArsI GACNNNNNNTTYG 2 cut(s) 1220, 1252
Asp700I GAANNNNTTC 3 cut(s) 213, 290, 678
AspLEI GCGC 2 cut(s) 892, 1214
AspS9I GGNCC 3 cut(s) 170, 782, 1216
AsuHPI GGTGA 3 cut(s) 379, 1037, 1333
AsuII TTCGAA 1 cut(s) 207
AvaII GGWCC 2 cut(s) 170, 1216
BaeGI GKGCMC 1 cut(s) 1097
BalI TGGCCA 1 cut(s) 1204
BanI GGYRCC 1 cut(s) 1092
BbsI GAAGAC 2 cut(s) 104, 397
BbvI GCAGC 3 cut(s) 425, 445, 477
BccI CCATC 5 cut(s) 179, 215, 493, 1318, 1357
BceAI ACGGC 2 cut(s) 37, 658
BcgI CGANNNNNNTGC 2 cut(s) 1021, 1055
BciT130I CCWGG 2 cut(s) 579, 1234
BcoDI GTCTC 1 cut(s) 1287
BfaI CTAG 2 cut(s) 86, 167
BfmI CTRYAG 1 cut(s) 1179
BfoI RGCGCY 1 cut(s) 893
BisI GCNGC 3 cut(s) 414, 459, 466
BlsI GCNGC 3 cut(s) 415, 460, 467
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 2 cut(s) 579, 1234
Bme18I GGWCC 2 cut(s) 170, 1216
BmgT120I GGNCC 3 cut(s) 170, 782, 1216
BmiI GGNNCC 2 cut(s) 653, 1094
BmrFI CCNGG 2 cut(s) 579, 1234
BmsI GCATC 2 cut(s) 706, 736
BpiI GAAGAC 2 cut(s) 104, 397
Bpu14I TTCGAA 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 601, 641, 661, 1127
Bse1I ACTGG 2 cut(s) 1205, 1395
Bse3DI GCAATG 2 cut(s) 81, 1252
BseBI CCWGG 2 cut(s) 579, 1234
BseGI GGATG 2 cut(s) 760, 1412
BseLI CCNNNNNNNGG 5 cut(s) 70, 601, 641, 661, 1127
BseMI GCAATG 2 cut(s) 81, 1252
BseNI ACTGG 2 cut(s) 1205, 1395
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 1097
BseXI GCAGC 3 cut(s) 425, 445, 477
BseYI CCCAGC 1 cut(s) 1120
Bsh1236I CGCG 1 cut(s) 1214
BshFI GGCC 4 cut(s) 28, 225, 783, 1204
BshNI GGYRCC 1 cut(s) 1092
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 981
BslI CCNNNNNNNGG 5 cut(s) 70, 601, 641, 661, 1127
BsmAI GTCTC 1 cut(s) 1287
BsmBI CGTCTC 1 cut(s) 1287
BsmFI GGGAC 1 cut(s) 981
BsmI GAATGC 1 cut(s) 42
BsnI GGCC 4 cut(s) 28, 225, 783, 1204
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 1097
Bsp143I GATC 3 cut(s) 604, 930, 1269
BspACI CCGC 3 cut(s) 492, 1149, 1214
BspANI GGCC 4 cut(s) 28, 225, 783, 1204
BspFNI CGCG 1 cut(s) 1214
BspHI TCATGA 1 cut(s) 933
BspLI GGNNCC 2 cut(s) 653, 1094
BspMAI CTGCAG 1 cut(s) 1183
BspPI GGATC 1 cut(s) 612
BspT104I TTCGAA 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 1092
BsrDI GCAATG 2 cut(s) 81, 1252
BsrI ACTGG 2 cut(s) 1205, 1395
BssMI GATC 3 cut(s) 604, 930, 1269
BssNI GRCGYC 1 cut(s) 258
Bst2UI CCWGG 2 cut(s) 579, 1234
Bst4CI ACNGT 4 cut(s) 136, 353, 389, 842
Bst6I CTCTTC 2 cut(s) 449, 1283
BstACI GRCGYC 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 5 cut(s) 191, 463, 1087, 1202, 1243
BstDEI CTNAG 1 cut(s) 295
BstF5I GGATG 2 cut(s) 760, 1412
BstFNI CGCG 1 cut(s) 1214
BstH2I RGCGCY 1 cut(s) 893
BstHHI GCGC 2 cut(s) 892, 1214
BstKTI GATC 3 cut(s) 607, 933, 1272
BstMAI GTCTC 1 cut(s) 1287
BstMBI GATC 3 cut(s) 604, 930, 1269
BstMWI GCNNNNNNNGC 1 cut(s) 1388
BstNI CCWGG 2 cut(s) 579, 1234
BstNSI RCATGY 1 cut(s) 770
BstSCI CCNGG 2 cut(s) 577, 1232
BstSFI CTRYAG 1 cut(s) 1179
BstSLI GKGCMC 1 cut(s) 1097
BstUI CGCG 1 cut(s) 1214
BstV1I GCAGC 3 cut(s) 425, 445, 477
BstV2I GAAGAC 2 cut(s) 104, 397
BstX2I RGATCY 1 cut(s) 604
BstXI CCANNNNNNTGG 1 cut(s) 1423
BstYI RGATCY 1 cut(s) 604
BsuRI GGCC 4 cut(s) 28, 225, 783, 1204
BtsCI GGATG 2 cut(s) 760, 1412
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 5 cut(s) 191, 463, 1087, 1202, 1243
CaiI CAGNNNCTG 1 cut(s) 1022
CciI TCATGA 1 cut(s) 933
CfoI GCGC 2 cut(s) 892, 1214
Cfr13I GGNCC 3 cut(s) 170, 782, 1216
CsiI ACCWGGT 1 cut(s) 1232
Csp6I GTAC 1 cut(s) 354
CviAII CATG 6 cut(s) 32, 472, 731, 767, 934, 1403
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 1 cut(s) 295
DpnI GATC 3 cut(s) 606, 932, 1271
DpnII GATC 3 cut(s) 604, 930, 1269
EaeI YGGCCR 1 cut(s) 1202
Eam1104I CTCTTC 2 cut(s) 449, 1283
EarI CTCTTC 2 cut(s) 449, 1283
Eco147I AGGCCT 1 cut(s) 28
Eco32I GATATC 1 cut(s) 592
Eco47I GGWCC 2 cut(s) 170, 1216
Eco57I CTGAAG 2 cut(s) 391, 711
EcoO109I RGGNCCY 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 1156
EcoRII CCWGG 2 cut(s) 577, 1232
EcoRV GATATC 1 cut(s) 592
EcoT22I ATGCAT 2 cut(s) 44, 721
Esp3I CGTCTC 1 cut(s) 1287
FaeI CATG 6 cut(s) 35, 475, 734, 770, 937, 1406
FaqI GGGAC 1 cut(s) 981
FatI CATG 6 cut(s) 31, 471, 730, 766, 933, 1402
FauI CCCGC 2 cut(s) 499, 1142
FblI GTMKAC 1 cut(s) 752
Fnu4HI GCNGC 3 cut(s) 414, 459, 466
FokI GGATG 2 cut(s) 747, 1399
Fsp4HI GCNGC 3 cut(s) 414, 459, 466
FspBI CTAG 2 cut(s) 86, 167
GlaI GCGC 2 cut(s) 891, 1213
GluI GCNGC 3 cut(s) 414, 459, 466
GsaI CCCAGC 1 cut(s) 1124
HaeII RGCGCY 1 cut(s) 893
HaeIII GGCC 4 cut(s) 28, 225, 783, 1204
HapII CCGG 1 cut(s) 365
HhaI GCGC 2 cut(s) 892, 1214
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 6 cut(s) 35, 475, 734, 770, 937, 1406
Hin6I GCGC 2 cut(s) 890, 1212
HinP1I GCGC 2 cut(s) 890, 1212
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 2 cut(s) 983, 1307
HinfI GANTC 9 cut(s) 250, 370, 394, 429, 574, 740, 1013, 1028, 1438
HpaII CCGG 1 cut(s) 365
HphI GGTGA 3 cut(s) 379, 1037, 1333
Hpy166II GTNNAC 5 cut(s) 130, 753, 913, 1343, 1400
Hpy188I TCNGA 5 cut(s) 238, 375, 410, 596, 807
Hpy188III TCNNGA 9 cut(s) 218, 254, 283, 308, 319, 610, 635, 649, 934
Hpy8I GTNNAC 5 cut(s) 130, 753, 913, 1343, 1400
HpyAV CCTTC 5 cut(s) 236, 236, 323, 668, 1330
HpyCH4III ACNGT 4 cut(s) 136, 353, 389, 842
HpyCH4IV ACGT 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 1 cut(s) 1388
HpyF3I CTNAG 1 cut(s) 295
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 6 cut(s) 35, 475, 734, 770, 937, 1406
HspAI GCGC 2 cut(s) 890, 1212
Kzo9I GATC 3 cut(s) 604, 930, 1269
LmnI GCTCC 2 cut(s) 304, 724
Lsp1109I GCAGC 3 cut(s) 425, 445, 477
LweI GCATC 2 cut(s) 706, 736
MabI ACCWGGT 1 cut(s) 1232
MaeI CTAG 2 cut(s) 86, 167
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 7 cut(s) 5, 367, 436, 625, 836, 1174, 1446
MalI GATC 3 cut(s) 606, 932, 1271
MboI GATC 3 cut(s) 604, 930, 1269
MboII GAAGA 9 cut(s) 104, 149, 397, 436, 695, 866, 1300, 1397, 1401
MfeI CAATTG 1 cut(s) 669
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 1 cut(s) 1097
MlsI TGGCCA 1 cut(s) 1204
MluCI AATT 9 cut(s) 289, 339, 669, 791, 895, 1002, 1156, 1257, 1429
MluNI TGGCCA 1 cut(s) 1204
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 2 cut(s) 371, 1108
Mox20I TGGCCA 1 cut(s) 1204
Mph1103I ATGCAT 2 cut(s) 44, 721
MroXI GAANNNNTTC 3 cut(s) 213, 290, 678
MscI TGGCCA 1 cut(s) 1204
MseI TTAA 6 cut(s) 599, 801, 926, 1113, 1139, 1314
MslI CAYNNNNRTG 4 cut(s) 47, 711, 765, 771
Msp20I TGGCCA 1 cut(s) 1204
MspA1I CMGCKG 1 cut(s) 1149
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 2 cut(s) 579, 1234
MunI CAATTG 1 cut(s) 669
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 2 cut(s) 579, 1234
MvnI CGCG 1 cut(s) 1214
MwoI GCNNNNNNNGC 1 cut(s) 1388
NdeII GATC 3 cut(s) 604, 930, 1269
NlaIII CATG 6 cut(s) 35, 475, 734, 770, 937, 1406
NlaIV GGNNCC 2 cut(s) 653, 1094
NmuCI GTSAC 3 cut(s) 367, 625, 1174
NsiI ATGCAT 2 cut(s) 44, 721
NspI RCATGY 1 cut(s) 770
NspV TTCGAA 1 cut(s) 207
PagI TCATGA 1 cut(s) 933
PceI AGGCCT 1 cut(s) 28
PciI ACATGT 1 cut(s) 766
PctI GAATGC 1 cut(s) 42
PdmI GAANNNNTTC 3 cut(s) 213, 290, 678
PfeI GAWTC 8 cut(s) 250, 394, 429, 574, 740, 1013, 1028, 1438
PflFI GACNNNGTC 1 cut(s) 560
PflMI CCANNNNNTGG 1 cut(s) 1127
PfoI TCCNGGA 1 cut(s) 577
PkrI GCNGC 3 cut(s) 415, 460, 467
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PpuMI RGGWCCY 1 cut(s) 170
PscI ACATGT 1 cut(s) 766
Psp5II RGGWCCY 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 577, 1232
PspFI CCCAGC 1 cut(s) 1120
PspGI CCWGG 2 cut(s) 577, 1232
PspN4I GGNNCC 2 cut(s) 653, 1094
PspPI GGNCC 3 cut(s) 170, 782, 1216
PspPPI RGGWCCY 1 cut(s) 170
PstI CTGCAG 1 cut(s) 1183
PstNI CAGNNNCTG 1 cut(s) 1022
PsuI RGATCY 1 cut(s) 604
PsyI GACNNNGTC 1 cut(s) 560
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
RseI CAYNNNNRTG 4 cut(s) 47, 711, 765, 771
SaqAI TTAA 6 cut(s) 599, 801, 926, 1113, 1139, 1314
SatI GCNGC 3 cut(s) 414, 459, 466
Sau3AI GATC 3 cut(s) 604, 930, 1269
Sau96I GGNCC 3 cut(s) 170, 782, 1216
ScaI AGTACT 1 cut(s) 355
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 2 cut(s) 579, 1234
SduI GDGCHC 1 cut(s) 1097
SexAI ACCWGGT 1 cut(s) 1232
SfaNI GCATC 2 cut(s) 706, 736
SfcI CTRYAG 1 cut(s) 1179
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 2 cut(s) 170, 1216
SmiMI CAYNNNNRTG 4 cut(s) 47, 711, 765, 771
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 9 cut(s) 289, 339, 669, 791, 895, 1002, 1156, 1257, 1429
SseBI AGGCCT 1 cut(s) 28
SsiI CCGC 3 cut(s) 492, 1149, 1214
SspMI CTAG 2 cut(s) 86, 167
StuI AGGCCT 1 cut(s) 28
StyD4I CCNGG 2 cut(s) 577, 1232
TaaI ACNGT 4 cut(s) 136, 353, 389, 842
TaiI ACGT 1 cut(s) 261
TaqI TCGA 4 cut(s) 207, 427, 941, 1031
TasI AATT 9 cut(s) 289, 339, 669, 791, 895, 1002, 1156, 1257, 1429
TatI WGTACW 1 cut(s) 353
TfiI GAWTC 8 cut(s) 250, 394, 429, 574, 740, 1013, 1028, 1438
Tru1I TTAA 6 cut(s) 599, 801, 926, 1113, 1139, 1314
Tru9I TTAA 6 cut(s) 599, 801, 926, 1113, 1139, 1314
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 3 cut(s) 367, 625, 1174
TseI GCWGC 3 cut(s) 413, 458, 465
Tsp45I GTSAC 3 cut(s) 367, 625, 1174
TspDTI ATGAA 9 cut(s) 104, 255, 345, 460, 695, 749, 1263, 1296, 1401
TspGWI ACGGA 2 cut(s) 291, 978
TspRI CASTG 1 cut(s) 141
Tth111I GACNNNGTC 1 cut(s) 560
Van91I CCANNNNNTGG 1 cut(s) 1127
VpaK11BI GGWCC 2 cut(s) 170, 1216
XapI RAATTY 3 cut(s) 289, 895, 1156
XceI RCATGY 1 cut(s) 770
XcmI CCANNNNNNNNNTGG 1 cut(s) 1124
XmiI GTMKAC 1 cut(s) 752
XmnI GAANNNNTTC 3 cut(s) 213, 290, 678
XspI CTAG 2 cut(s) 86, 167
ZraI GACGTC 1 cut(s) 259
ZrmI AGTACT 1 cut(s) 355
Zsp2I ATGCAT 2 cut(s) 44, 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.