Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003535

Physical Location & Seq

Genomic Coordinates Reverse (-)

9406032 .. 9407165

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00168560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCTCCACCGCCAAATGCCATCGTTTTGTCTCATCCAGGTTCCCGGTCGGATAAAGAGAATCTCAACTTCTTTATCCGGACCTCTTCACCCGCCGCAAATCGACGACATTGAGTTCAAGAAGAAGGCTCGGAGTCTCTCGCTTCAGCTCCGCAAAGACTACGACAAGGCCGCCTACTTAATTTCCACAACTAGCCTCGGGGTCCGAGAACAAGCCACCTCCGCCGTCTTGCTCCTCCCCGCCGCAAACAACAAGTCGCACAAAGCGGTGTTCAAGGAAGGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

95

Amino Acids

10.61

Weight (kDa)

10.08

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05810 AT2G05810
fragaria_vesca	FvH4_1g21781 FvH4_3g23060 FvH4_6g42120
malus_domestica	MD09G1114400.v1.1 MD17G1106100.v1.1
prunus_persica	Prupe.3G210100_v2.0.a1
pyrus_communis	pycom09g03890 pycom17g09870
rosa_chinensis	RchiOBHm_Chr2g0158031
rosa_laevigata	RLG00000005113 RLG00000009946 RLG00000011412 RLG00000014991 RLG00000021051 RLG00000034476
rosa_multiflora	Rmu_co8383981.1_g000001 Rmu_sc0000419.1_g000016 Rmu_sc0004064.1_g000016 Rmu_sc0009909.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091730 Rroxscaffold_7G00168560
rosa_rugosa	Rorug02G0465300
rosa_samantha	Rh2AG531300 Rh2BG545800 Rh2CG515600 Rh2DG553900 Rh3AG074100 Rh3CG075500 Rh4AG058000 Rh4BG056800 Rh6AG401300 Rh6CG415200
rosa_wichuraiana	Rw2G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	9 cut(s)	10, 92, 95, 151, 171, 222, 240, 243, 266
AcuI	CTGAAG	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	118, 274
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	35, 140
Ama87I	CYCGRG	1 cut(s)	197
Aor13HI	TCCGGA	1 cut(s)	77
AoxI	GGCC	1 cut(s)	168
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspS9I	GGNCC	2 cut(s)	80, 202
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	80, 202
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	38
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	2 cut(s)	35, 140
BfaI	CTAG	1 cut(s)	192
BisI	GCNGC	3 cut(s)	95, 171, 243
BlsI	GCNGC	3 cut(s)	96, 172, 244
Bme1390I	CCNGG	2 cut(s)	38, 45
Bme18I	GGWCC	2 cut(s)	80, 202
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	80, 202
BmiI	GGNNCC	2 cut(s)	42, 203
BmrFI	CCNGG	2 cut(s)	38, 45
BpuMI	CCSGG	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	196
BsaWI	WCCGGW	1 cut(s)	77
BseAI	TCCGGA	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	45, 78
BsmAI	GTCTC	2 cut(s)	35, 140
BsnI	GGCC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	197
Bsp13I	TCCGGA	1 cut(s)	77
BspACI	CCGC	9 cut(s)	10, 92, 95, 151, 171, 222, 240, 243, 266
BspANI	GGCC	1 cut(s)	170
BspEI	TCCGGA	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	42, 203
BssECI	CCNNGG	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	33
BstMAI	GTCTC	2 cut(s)	35, 140
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	2 cut(s)	36, 43
BsuRI	GGCC	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	33
Cfr13I	GGNCC	2 cut(s)	80, 202
CviJI	RGCY	5 cut(s)	128, 148, 170, 195, 215
CviKI_1	RGCY	5 cut(s)	128, 148, 170, 195, 215
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	211
Eco47I	GGWCC	2 cut(s)	80, 202
Eco57I	CTGAAG	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	36
FauI	CCCGC	2 cut(s)	99, 247
Fnu4HI	GCNGC	3 cut(s)	95, 171, 243
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	95, 171, 243
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	3 cut(s)	95, 171, 243
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	2 cut(s)	45, 78
HinfI	GANTC	2 cut(s)	60, 133
HpaII	CCGG	2 cut(s)	45, 78
HphI	GGTGA	1 cut(s)	80
Hpy188I	TCNGA	3 cut(s)	51, 132, 206
Hpy188III	TCNNGA	2 cut(s)	78, 118
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	2 cut(s)	118, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
Kpn2I	TCCGGA	1 cut(s)	77
LmnI	GCTCC	3 cut(s)	9, 153, 237
LpnPI	CCDG	4 cut(s)	23, 50, 58, 91
MaeI	CTAG	1 cut(s)	192
MboII	GAAGA	2 cut(s)	77, 133
MluCI	AATT	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	29
MnlI	CCTC	4 cut(s)	93, 206, 229, 245
MroI	TCCGGA	1 cut(s)	77
MseI	TTAA	1 cut(s)	179
MspI	CCGG	2 cut(s)	45, 78
MspR9I	CCNGG	2 cut(s)	38, 45
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	45
NlaIV	GGNNCC	2 cut(s)	42, 203
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	3 cut(s)	96, 172, 244
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	42, 203
PspPI	GGNCC	2 cut(s)	80, 202
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	3 cut(s)	95, 171, 243
Sau96I	GGNCC	2 cut(s)	80, 202
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	2 cut(s)	38, 45
SetI	ASST	4 cut(s)	42, 85, 150, 221
SinI	GGWCC	2 cut(s)	80, 202
Sse9I	AATT	1 cut(s)	180
SsiI	CCGC	9 cut(s)	10, 92, 95, 151, 171, 222, 240, 243, 266
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	36, 43
TaqI	TCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	180
TauI	GCSGC	3 cut(s)	97, 173, 245
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	80, 202
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.