Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003535

Physical Location & Seq

Genomic Coordinates Forward (+)

5965280 .. 5965666

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG074100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCAGAGTGACCTCGACATGGCTACCGCGTCCCTCACCAACCAGCTCTGTGACCTAGACTTGCTGCTCAGATCAGGTGTGCTCCACCAGTCAAGCGCCATCGTTTTGACGCATCCAGGTTCCGAGTCGGATAAAGAGAATCTCAGCTTCTTTATCCGGGACCTCTTCACCCGGCTTCAAATCGGCGGCATCGAGTTCAAGAAGAAGGCCCTGGAGTCTCTGCTTCAGCTCAGCGAAGACTACGACAAGGCCGCCTGCTTGATTTCCACAACTAGCCTTGGGTCTGAGAACAAGCCACCTCCGCCATCTCACTCGTCGCCGCCGCAAATGATGAGCCGCGCAAGGCGGTGTTCGAGGAAAGGGTGTAGGCCCGTTGTTGAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

128

Amino Acids

14.08

Weight (kDa)

6.82

Isoelectric Point (pI)

74.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05810 AT2G05810
fragaria_vesca	FvH4_1g21781 FvH4_3g23060 FvH4_6g42120
malus_domestica	MD09G1114400.v1.1 MD17G1106100.v1.1
prunus_persica	Prupe.3G210100_v2.0.a1
pyrus_communis	pycom09g03890 pycom17g09870
rosa_chinensis	RchiOBHm_Chr2g0158031
rosa_laevigata	RLG00000005113 RLG00000009946 RLG00000011412 RLG00000014991 RLG00000021051 RLG00000034476
rosa_multiflora	Rmu_co8383981.1_g000001 Rmu_sc0000419.1_g000016 Rmu_sc0004064.1_g000016 Rmu_sc0009909.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091730 Rroxscaffold_7G00168560
rosa_rugosa	Rorug02G0465300
rosa_samantha	Rh2AG531300 Rh2BG545800 Rh2CG515600 Rh2DG553900 Rh3AG074100 Rh3CG075500 Rh4AG058000 Rh4BG056800 Rh6AG401300 Rh6CG415200
rosa_wichuraiana	Rw2G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	29, 339
AciI	CCGC	8 cut(s)	27, 186, 252, 302, 320, 323, 337, 346
AcuI	CTGAAG	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	179, 199
AjnI	CCWGG	2 cut(s)	115, 210
AluBI	AGCT	3 cut(s)	46, 147, 229
AluI	AGCT	3 cut(s)	46, 147, 229
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	222
AoxI	GGCC	3 cut(s)	207, 249, 368
ApeKI	GCWGC	1 cut(s)	64
AspLEI	GCGC	2 cut(s)	98, 341
AspS9I	GGNCC	3 cut(s)	160, 208, 369
AsuC2I	CCSGG	2 cut(s)	158, 172
AsuHPI	GGTGA	2 cut(s)	28, 160
AvaII	GGWCC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	2 cut(s)	107, 313
BciT130I	CCWGG	2 cut(s)	117, 212
BcnI	CCSGG	2 cut(s)	158, 172
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	2 cut(s)	56, 273
BfoI	RGCGCY	1 cut(s)	99
BisI	GCNGC	6 cut(s)	65, 187, 252, 320, 323, 337
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	6 cut(s)	66, 188, 253, 321, 324, 338
Bme1390I	CCNGG	4 cut(s)	117, 158, 172, 212
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	3 cut(s)	160, 208, 369
BmiI	GGNNCC	2 cut(s)	121, 161
BmrFI	CCNGG	4 cut(s)	117, 158, 172, 212
BmsI	GCATC	2 cut(s)	121, 198
BpiI	GAAGAC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	233
Bpu1102I	GCTNAGC	1 cut(s)	230
BpuMI	CCSGG	2 cut(s)	158, 172
BsaJI	CCNNGG	2 cut(s)	210, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	117, 212
BseDI	CCNNGG	2 cut(s)	210, 277
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMII	CTCAG	4 cut(s)	82, 157, 244, 276
BseNI	ACTGG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	51
Bsh1236I	CGCG	2 cut(s)	29, 339
BshFI	GGCC	3 cut(s)	209, 251, 370
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	157, 172
BslFI	GGGAC	2 cut(s)	16, 173
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	2 cut(s)	16, 173
BsnI	GGCC	3 cut(s)	209, 251, 370
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	71
Bsp1720I	GCTNAGC	1 cut(s)	230
BspACI	CCGC	8 cut(s)	27, 186, 252, 302, 320, 323, 337, 346
BspANI	GGCC	3 cut(s)	209, 251, 370
BspCNI	CTCAG	4 cut(s)	81, 156, 243, 277
BspFNI	CGCG	2 cut(s)	29, 339
BspLI	GGNNCC	2 cut(s)	121, 161
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	210, 277
BssMI	GATC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	117, 212
Bst6I	CTCTTC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	4 cut(s)	68, 143, 230, 285
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	2 cut(s)	29, 339
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	2 cut(s)	98, 341
BstKTI	GATC	1 cut(s)	74
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	2 cut(s)	117, 212
BstSCI	CCNGG	4 cut(s)	115, 156, 170, 210
BstUI	CGCG	2 cut(s)	29, 339
BstV1I	GCAGC	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	209, 251, 370
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	256
CfoI	GCGC	2 cut(s)	98, 341
Cfr13I	GGNCC	3 cut(s)	160, 208, 369
CseI	GACGC	2 cut(s)	18, 118
CviAII	CATG	1 cut(s)	19
DdeI	CTNAG	4 cut(s)	68, 143, 230, 285
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
EciI	GGCGGA	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	209
EcoO109I	RGGNCCY	2 cut(s)	160, 208
EcoRII	CCWGG	2 cut(s)	115, 210
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	1 cut(s)	22
FaiI	YATR	1 cut(s)	20
FaqI	GGGAC	2 cut(s)	16, 173
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	6 cut(s)	65, 187, 252, 320, 323, 337
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	6 cut(s)	65, 187, 252, 320, 323, 337
FspBI	CTAG	2 cut(s)	56, 273
GlaI	GCGC	2 cut(s)	97, 340
GluI	GCNGC	6 cut(s)	65, 187, 252, 320, 323, 337
GsuI	CTGGAG	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	209, 251, 370
HapII	CCGG	2 cut(s)	157, 172
HgaI	GACGC	2 cut(s)	18, 118
HhaI	GCGC	2 cut(s)	98, 341
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	2 cut(s)	96, 339
HinP1I	GCGC	2 cut(s)	96, 339
HinfI	GANTC	3 cut(s)	125, 139, 215
HpaII	CCGG	2 cut(s)	157, 172
HphI	GGTGA	2 cut(s)	28, 160
Hpy188I	TCNGA	4 cut(s)	71, 124, 130, 286
Hpy188III	TCNNGA	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	4 cut(s)	68, 143, 230, 285
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	2 cut(s)	96, 339
Kzo9I	GATC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	87
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	2 cut(s)	121, 198
MaeI	CTAG	2 cut(s)	56, 273
MaeIII	GTNAC	2 cut(s)	8, 50
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	3 cut(s)	157, 214, 248
MhlI	GDGCHC	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	134, 224
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	5 cut(s)	23, 44, 173, 309, 348
MspI	CCGG	2 cut(s)	157, 172
MspR9I	CCNGG	4 cut(s)	117, 158, 172, 212
MvaI	CCWGG	2 cut(s)	117, 212
MvnI	CGCG	2 cut(s)	29, 339
MwoI	GCNNNNNNNGC	1 cut(s)	301
NciI	CCSGG	2 cut(s)	158, 172
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	121, 161
NmuCI	GTSAC	2 cut(s)	8, 50
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	6 cut(s)	66, 188, 253, 321, 324, 338
PleI	GAGTC	2 cut(s)	133, 223
PpsI	GAGTC	2 cut(s)	133, 223
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	2 cut(s)	115, 210
PspGI	CCWGG	2 cut(s)	115, 210
PspN4I	GGNNCC	2 cut(s)	121, 161
PspPI	GGNCC	3 cut(s)	160, 208, 369
PspPPI	RGGWCCY	1 cut(s)	160
SatI	GCNGC	6 cut(s)	65, 187, 252, 320, 323, 337
Sau3AI	GATC	1 cut(s)	71
Sau96I	GGNCC	3 cut(s)	160, 208, 369
SchI	GAGTC	2 cut(s)	134, 224
ScrFI	CCNGG	4 cut(s)	117, 158, 172, 212
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	9 cut(s)	15, 48, 57, 79, 121, 149, 165, 231, 301
SfaNI	GCATC	2 cut(s)	121, 198
SinI	GGWCC	1 cut(s)	160
SsiI	CCGC	8 cut(s)	27, 186, 252, 302, 320, 323, 337, 346
SspMI	CTAG	2 cut(s)	56, 273
StyD4I	CCNGG	4 cut(s)	115, 156, 170, 210
StyI	CCWWGG	1 cut(s)	277
TaqI	TCGA	3 cut(s)	15, 192, 353
TauI	GCSGC	5 cut(s)	189, 254, 322, 325, 339
TfiI	GAWTC	1 cut(s)	139
TseFI	GTSAC	2 cut(s)	8, 50
TseI	GCWGC	1 cut(s)	64
Tsp45I	GTSAC	2 cut(s)	8, 50
VpaK11BI	GGWCC	1 cut(s)	160
XspI	CTAG	2 cut(s)	56, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.