Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003535

Physical Location & Seq

Genomic Coordinates Reverse (-)

13740655 .. 13741223

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21781.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCAGACCTCCTCCTCCTCCTCCCCACTCCAAACCCTCCTCGACCTCATCAACGAGACCCTCTCCCTCCTCCTCCGCACCTCTCTCACCGTCCGATCCTTCCCCTCCCGCTGGCACCCCCTCCGCTCCAACCTCCTCTCCCTCCACTCCTCCATCTCCTCCGTCTCCGACTCCCCCCACTGGGCCGAGAATCCTCTCCTCTACACTCTCCTCCCCAACCTCCTCTCCACTCTCCAGCGCCTCAAGGCTCTCTCCGACCAATGCAACGACTCGTCATTTTCCGGCGGGAAGCTCCACATATCCGACGACGGATCTGTGAGTGAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

110

Amino Acids

11.94

Weight (kDa)

6.0

Isoelectric Point (pI)

67.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7032	PF23005	18 - 102	3.3e-20	Domain of unknown function (DUF7032)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05810 AT2G05810
fragaria_vesca	FvH4_1g21781 FvH4_3g23060 FvH4_6g42120
malus_domestica	MD09G1114400.v1.1 MD17G1106100.v1.1
prunus_persica	Prupe.3G210100_v2.0.a1
pyrus_communis	pycom09g03890 pycom17g09870
rosa_chinensis	RchiOBHm_Chr2g0158031
rosa_laevigata	RLG00000005113 RLG00000009946 RLG00000011412 RLG00000014991 RLG00000021051 RLG00000034476
rosa_multiflora	Rmu_co8383981.1_g000001 Rmu_sc0000419.1_g000016 Rmu_sc0004064.1_g000016 Rmu_sc0009909.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091730 Rroxscaffold_7G00168560
rosa_rugosa	Rorug02G0465300
rosa_samantha	Rh2AG531300 Rh2BG545800 Rh2CG515600 Rh2DG553900 Rh3AG074100 Rh3CG075500 Rh4AG058000 Rh4BG056800 Rh6AG401300 Rh6CG415200
rosa_wichuraiana	Rw2G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	114
AccBSI	CCGCTC	1 cut(s)	126
AciI	CCGC	4 cut(s)	76, 109, 124, 285
AclWI	GGATC	2 cut(s)	90, 319
AfiI	CCNNNNNNNGG	3 cut(s)	111, 180, 181
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw26I	GTCTC	2 cut(s)	50, 169
AlwI	GGATC	2 cut(s)	90, 319
AoxI	GGCC	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	114
BccI	CCATC	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	50, 169
BfoI	RGCGCY	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	116
BmrI	ACTGGG	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	190
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpmI	CTGGAG	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	50
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 209, 239
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 180, 181
Bse1I	ACTGG	1 cut(s)	185
BseLI	CCNNNNNNNGG	3 cut(s)	111, 180, 181
BseNI	ACTGG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	282
BslI	CCNNNNNNNGG	3 cut(s)	111, 180, 181
BsmAI	GTCTC	2 cut(s)	50, 169
BsmBI	CGTCTC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	185
Bso31I	GGTCTC	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	95, 311
BspACI	CCGC	4 cut(s)	76, 109, 124, 285
BspANI	GGCC	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	2 cut(s)	90, 319
BspT107I	GGYRCC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	50
BsrBI	CCGCTC	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	185
BssMI	GATC	2 cut(s)	95, 311
Bst4CI	ACNGT	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	113
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	2 cut(s)	98, 314
BstMAI	GTCTC	2 cut(s)	50, 169
BstMBI	GATC	2 cut(s)	95, 311
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	113
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	183
CviJI	RGCY	3 cut(s)	185, 248, 292
CviKI_1	RGCY	3 cut(s)	185, 248, 292
DpnI	GATC	2 cut(s)	97, 313
DpnII	GATC	2 cut(s)	95, 311
Eco31I	GGTCTC	1 cut(s)	50
Esp3I	CGTCTC	1 cut(s)	169
FaiI	YATR	1 cut(s)	299
FauI	CCCGC	2 cut(s)	116, 278
GlaI	GCGC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	218
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	282
HhaI	GCGC	1 cut(s)	240
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	3 cut(s)	170, 190, 269
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	4 cut(s)	95, 169, 256, 304
Hpy99I	CGWCG	2 cut(s)	308, 311
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	4, 264
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	95, 311
LmnI	GCTCC	2 cut(s)	131, 297
LpnPI	CCDG	4 cut(s)	97, 166, 248, 295
MalI	GATC	2 cut(s)	97, 313
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	2 cut(s)	95, 311
MflI	RGATCY	1 cut(s)	311
MlyI	GAGTC	2 cut(s)	164, 263
MmeI	TCCRAC	4 cut(s)	153, 192, 279, 327
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	1 cut(s)	282
NdeII	GATC	2 cut(s)	95, 311
NlaIV	GGNNCC	1 cut(s)	116
NmeAIII	GCCGAG	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	190
PleI	GAGTC	2 cut(s)	164, 263
PpsI	GAGTC	2 cut(s)	164, 263
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	311
Sau3AI	GATC	2 cut(s)	95, 311
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	2 cut(s)	164, 263
SetI	ASST	6 cut(s)	11, 48, 83, 135, 222, 294
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SsiI	CCGC	4 cut(s)	76, 109, 124, 285
TaaI	ACNGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	190
TscAI	CASTG	1 cut(s)	185
TspGWI	ACGGA	2 cut(s)	151, 324
TspRI	CASTG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.