Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009909.1

Orthogroup ID

OG0003535

Physical Location & Seq

Genomic Coordinates Reverse (-)

41332 .. 41586

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009909.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atgaatccctcgctgtcttcttcttcttcttctcctccgtcttctacttcggcttccgccggttcctggttctccggcgttgtccggggccggtccgaccgggccgggtccgtcaagatgggctccgactctggctccggtggttccggtgacttttccggccccgtcgtgcgcaagaatcagttccgaggggcgctcttcaagtacggccccaaaccaattcaggttaggttgaatcaaacgttccacatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1749

Protein Analysis

84

Amino Acids

8.68

Weight (kDa)

11.4

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05810 AT2G05810
fragaria_vesca	FvH4_1g21781 FvH4_3g23060 FvH4_6g42120
malus_domestica	MD09G1114400.v1.1 MD17G1106100.v1.1
prunus_persica	Prupe.3G210100_v2.0.a1
pyrus_communis	pycom09g03890 pycom17g09870
rosa_chinensis	RchiOBHm_Chr2g0158031
rosa_laevigata	RLG00000005113 RLG00000009946 RLG00000011412 RLG00000014991 RLG00000021051 RLG00000034476
rosa_multiflora	Rmu_co8383981.1_g000001 Rmu_sc0000419.1_g000016 Rmu_sc0004064.1_g000016 Rmu_sc0009909.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091730 Rroxscaffold_7G00168560
rosa_rugosa	Rorug02G0465300
rosa_samantha	Rh2AG531300 Rh2BG545800 Rh2CG515600 Rh2DG553900 Rh3AG074100 Rh3CG075500 Rh4AG058000 Rh4BG056800 Rh6AG401300 Rh6CG415200
rosa_wichuraiana	Rw2G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	173
AciI	CCGC	1 cut(s)	57
AclI	AACGTT	1 cut(s)	242
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	202, 235
AjnI	CCWGG	1 cut(s)	65
AoxI	GGCC	4 cut(s)	88, 102, 160, 208
Asp700I	GAANNNNTTC	1 cut(s)	182
AspLEI	GCGC	2 cut(s)	174, 196
AspS9I	GGNCC	6 cut(s)	88, 93, 102, 108, 161, 209
AsuC2I	CCSGG	3 cut(s)	86, 101, 106
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	93, 108
BanII	GRGCYC	1 cut(s)	125
BbsI	GAAGAC	2 cut(s)	9, 33
BccI	CCATC	1 cut(s)	112
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	67
BcnI	CCSGG	3 cut(s)	86, 101, 106
BfoI	RGCGCY	1 cut(s)	197
Bme1390I	CCNGG	4 cut(s)	67, 86, 101, 106
Bme18I	GGWCC	2 cut(s)	93, 108
BmgT120I	GGNCC	6 cut(s)	88, 93, 102, 108, 161, 209
BmiI	GGNNCC	8 cut(s)	64, 89, 109, 124, 136, 145, 163, 211
BmrFI	CCNGG	4 cut(s)	67, 86, 101, 106
BpiI	GAAGAC	2 cut(s)	9, 33
BplI	GAGNNNNNCTC	2 cut(s)	180, 212
BpuMI	CCSGG	3 cut(s)	86, 101, 106
BsaJI	CCNNGG	2 cut(s)	85, 187
BsaWI	WCCGGW	2 cut(s)	137, 146
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	2 cut(s)	59, 90
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	85, 187
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	24
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	4 cut(s)	90, 104, 162, 210
BsiEI	CGRYCG	1 cut(s)	100
BsiSI	CCGG	9 cut(s)	60, 75, 85, 91, 100, 105, 138, 147, 159
BslI	CCNNNNNNNGG	1 cut(s)	66
BsnI	GGCC	4 cut(s)	90, 104, 162, 210
Bsp1286I	GDGCHC	1 cut(s)	125
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	4 cut(s)	90, 104, 162, 210
BspLI	GGNNCC	8 cut(s)	64, 89, 109, 124, 136, 145, 163, 211
BspQI	GCTCTTC	1 cut(s)	203
BsrFI	RCCGGY	2 cut(s)	59, 90
BssAI	RCCGGY	2 cut(s)	59, 90
BssECI	CCNNGG	2 cut(s)	85, 187
Bst2UI	CCWGG	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	2 cut(s)	174, 196
BstMCI	CGRYCG	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	4 cut(s)	65, 84, 99, 104
BstV2I	GAAGAC	2 cut(s)	9, 33
BsuRI	GGCC	4 cut(s)	90, 104, 162, 210
CfoI	GCGC	2 cut(s)	174, 196
Cfr10I	RCCGGY	2 cut(s)	59, 90
Cfr13I	GGNCC	6 cut(s)	88, 93, 102, 108, 161, 209
CpoI	CGGWCCG	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	205
CspI	CGGWCCG	1 cut(s)	93
CviJI	RGCY	7 cut(s)	53, 90, 104, 123, 135, 162, 210
CviKI_1	RGCY	7 cut(s)	53, 90, 104, 123, 135, 162, 210
CviQI	GTAC	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	93, 108
EcoRII	CCWGG	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	125
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	2 cut(s)	173, 195
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	4 cut(s)	90, 104, 162, 210
HapII	CCGG	9 cut(s)	60, 75, 85, 91, 100, 105, 138, 147, 159
HhaI	GCGC	2 cut(s)	174, 196
Hin6I	GCGC	2 cut(s)	172, 194
HinP1I	GCGC	2 cut(s)	172, 194
HinfI	GANTC	4 cut(s)	4, 128, 178, 235
HpaII	CCGG	9 cut(s)	60, 75, 85, 91, 100, 105, 138, 147, 159
HphI	GGTGA	1 cut(s)	161
Hpy188I	TCNGA	3 cut(s)	97, 127, 188
Hpy188III	TCNNGA	1 cut(s)	115
Hpy99I	CGWCG	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	242
HspAI	GCGC	2 cut(s)	172, 194
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	2 cut(s)	128, 140
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	7 cut(s)	9, 12, 15, 18, 21, 33, 190
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	120, 150
MnlI	CCTC	3 cut(s)	19, 45, 182
MroXI	GAANNNNTTC	1 cut(s)	182
MspI	CCGG	9 cut(s)	60, 75, 85, 91, 100, 105, 138, 147, 159
MspR9I	CCNGG	4 cut(s)	67, 86, 101, 106
MvaI	CCWGG	1 cut(s)	67
NciI	CCSGG	3 cut(s)	86, 101, 106
NlaIV	GGNNCC	8 cut(s)	64, 89, 109, 124, 136, 145, 163, 211
NmuCI	GTSAC	1 cut(s)	149
NsbI	TGCGCA	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	3 cut(s)	4, 178, 235
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
Psp1406I	AACGTT	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	8 cut(s)	64, 89, 109, 124, 136, 145, 163, 211
PspPI	GGNCC	6 cut(s)	88, 93, 102, 108, 161, 209
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
Rsr2I	CGGWCCG	1 cut(s)	93
RsrII	CGGWCCG	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	203
Sau96I	GGNCC	6 cut(s)	88, 93, 102, 108, 161, 209
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	4 cut(s)	67, 86, 101, 106
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	3 cut(s)	228, 233, 245
SinI	GGWCC	2 cut(s)	93, 108
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	1 cut(s)	57
StyD4I	CCNGG	4 cut(s)	65, 84, 99, 104
TaiI	ACGT	1 cut(s)	245
TasI	AATT	1 cut(s)	219
TfiI	GAWTC	3 cut(s)	4, 178, 235
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	27, 100
VpaK11BI	GGWCC	2 cut(s)	93, 108
XmnI	GAANNNNTTC	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.