Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003535

Physical Location & Seq

Genomic Coordinates Reverse (-)

13257051 .. 13259978

Gene Structure 2928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCAGAGCGACCTCGACATGGCCGCCGCGTCCCTCACCAACCAGCTCCGCGACCTCGACCTGCTGCTCAGATCTGGCGTGCTCCACCAGTCAAACGCCATCGTTTTGTCGCAGCCGGGTCCCGGGTCGGATAAAGAGAATCTCAGCTTCTTTATCCGGGACCTCTTCACGCGTCTGCAAATCGGCGGCGTCGAGTTCAAGAAGAAGGCTCTGGAGTCTCTGCTTCAGCTTCTCGAAGATGACGACAAGGCCGCGACCCTCGTCGCCAAAGAAGGAAACGTCGCCTATTTGATTCACCTTCTCGATTTCCACAACCAGCCCTGGGTCCGAGAACAGGCCACCTCCGCCGTGTCGCTCCTCGCCGCCGCAAACGACGAGTCGCGCAAGGCGGTGTTCGAGGAAGGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

136

Amino Acids

14.96

Weight (kDa)

4.84

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05810 AT2G05810
fragaria_vesca	FvH4_1g21781 FvH4_3g23060 FvH4_6g42120
malus_domestica	MD09G1114400.v1.1 MD17G1106100.v1.1
prunus_persica	Prupe.3G210100_v2.0.a1
pyrus_communis	pycom09g03890 pycom17g09870
rosa_chinensis	RchiOBHm_Chr2g0158031
rosa_laevigata	RLG00000005113 RLG00000009946 RLG00000011412 RLG00000014991 RLG00000021051 RLG00000034476
rosa_multiflora	Rmu_co8383981.1_g000001 Rmu_sc0000419.1_g000016 Rmu_sc0004064.1_g000016 Rmu_sc0009909.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091730 Rroxscaffold_7G00168560
rosa_rugosa	Rorug02G0465300
rosa_samantha	Rh2AG531300 Rh2BG545800 Rh2CG515600 Rh2DG553900 Rh3AG074100 Rh3CG075500 Rh4AG058000 Rh4BG056800 Rh6AG401300 Rh6CG415200
rosa_wichuraiana	Rw2G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	69
AccII	CGCG	5 cut(s)	29, 51, 172, 254, 382
AciI	CCGC	9 cut(s)	24, 27, 49, 186, 252, 345, 363, 366, 389
AcoI	YGGCCR	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	189
AfiI	CCNNNNNNNGG	4 cut(s)	19, 122, 322, 334
AflIII	ACRYGT	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	3 cut(s)	46, 147, 229
AluI	AGCT	3 cut(s)	46, 147, 229
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	222
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	3 cut(s)	21, 249, 336
ApeKI	GCWGC	2 cut(s)	64, 112
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	3 cut(s)	119, 160, 325
AsuC2I	CCSGG	4 cut(s)	117, 123, 124, 158
AsuHPI	GGTGA	2 cut(s)	28, 287
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	3 cut(s)	119, 160, 325
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	51, 124
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	322
BcnI	CCSGG	4 cut(s)	117, 123, 124, 158
BcoDI	GTCTC	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	69
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	8 cut(s)	24, 27, 65, 113, 187, 252, 363, 366
BlsI	GCNGC	8 cut(s)	25, 28, 66, 114, 188, 253, 364, 367
Bme1390I	CCNGG	5 cut(s)	117, 123, 124, 158, 322
Bme18I	GGWCC	3 cut(s)	119, 160, 325
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	3 cut(s)	119, 160, 325
BmiI	GGNNCC	4 cut(s)	120, 121, 161, 326
BmrFI	CCNGG	5 cut(s)	117, 123, 124, 158, 322
BoxI	GACNNNNGTC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	233
BpuMI	CCSGG	4 cut(s)	117, 123, 124, 158
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	3 cut(s)	122, 320, 321
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 122, 322, 334
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	3 cut(s)	122, 320, 321
BseLI	CCNNNNNNNGG	4 cut(s)	19, 122, 322, 334
BseMII	CTCAG	2 cut(s)	82, 157
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	51, 124
Bsh1236I	CGCG	5 cut(s)	29, 51, 172, 254, 382
BshFI	GGCC	3 cut(s)	23, 251, 338
BsiHKAI	GWGCWC	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	116, 123, 157
BslFI	GGGAC	3 cut(s)	16, 105, 173
BslI	CCNNNNNNNGG	4 cut(s)	19, 122, 322, 334
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	3 cut(s)	16, 105, 173
BsnI	GGCC	3 cut(s)	23, 251, 338
BsoBI	CYCGRG	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	71
BspACI	CCGC	9 cut(s)	24, 27, 49, 186, 252, 345, 363, 366, 389
BspANI	GGCC	3 cut(s)	23, 251, 338
BspCNI	CTCAG	2 cut(s)	81, 156
BspFNI	CGCG	5 cut(s)	29, 51, 172, 254, 382
BspLI	GGNNCC	4 cut(s)	120, 121, 161, 326
BspMI	ACCTGC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	3 cut(s)	122, 320, 321
BssMI	GATC	1 cut(s)	71
BssNI	GRCGYC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	68, 143
BstFNI	CGCG	5 cut(s)	29, 51, 172, 254, 382
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	1 cut(s)	74
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	322
BstPAI	GACNNNNGTC	1 cut(s)	260
BstSCI	CCNGG	5 cut(s)	115, 121, 122, 156, 320
BstUI	CGCG	5 cut(s)	29, 51, 172, 254, 382
BstV1I	GCAGC	2 cut(s)	51, 124
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	23, 251, 338
BveI	ACCTGC	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	80
CfoI	GCGC	1 cut(s)	384
Cfr13I	GGNCC	3 cut(s)	119, 160, 325
Cfr9I	CCCGGG	1 cut(s)	122
CseI	GACGC	3 cut(s)	18, 161, 178
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	9 cut(s)	23, 46, 115, 147, 209, 229, 251, 319, 338
CviKI_1	RGCY	9 cut(s)	23, 46, 115, 147, 209, 229, 251, 319, 338
DdeI	CTNAG	2 cut(s)	68, 143
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
EciI	GGCGGA	1 cut(s)	334
Eco47I	GGWCC	3 cut(s)	119, 160, 325
Eco57I	CTGAAG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	122
EcoO109I	RGGNCCY	2 cut(s)	119, 160
EcoRII	CCWGG	1 cut(s)	320
FaeI	CATG	1 cut(s)	22
FaiI	YATR	1 cut(s)	20
FaqI	GGGAC	3 cut(s)	16, 105, 173
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	8 cut(s)	24, 27, 65, 113, 187, 252, 363, 366
Fsp4HI	GCNGC	8 cut(s)	24, 27, 65, 113, 187, 252, 363, 366
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	8 cut(s)	24, 27, 65, 113, 187, 252, 363, 366
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	3 cut(s)	23, 251, 338
HapII	CCGG	3 cut(s)	116, 123, 157
HgaI	GACGC	3 cut(s)	18, 161, 178
HhaI	GCGC	1 cut(s)	384
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HinfI	GANTC	4 cut(s)	139, 215, 292, 377
HpaII	CCGG	3 cut(s)	116, 123, 157
HphI	GGTGA	2 cut(s)	28, 287
Hpy188I	TCNGA	3 cut(s)	71, 130, 329
Hpy188III	TCNNGA	4 cut(s)	199, 212, 233, 302
Hpy99I	CGWCG	4 cut(s)	194, 266, 284, 377
HpyAV	CCTTC	4 cut(s)	199, 266, 308, 395
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	2 cut(s)	4, 178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	2 cut(s)	68, 143
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	382
KflI	GGGWCCC	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	71
LmnI	GCTCC	3 cut(s)	51, 87, 360
Lsp1109I	GCAGC	2 cut(s)	51, 124
MaeII	ACGT	1 cut(s)	279
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	3 cut(s)	157, 214, 248
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	84
MluI	ACGCGT	1 cut(s)	170
MlyI	GAGTC	2 cut(s)	224, 386
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	8 cut(s)	23, 44, 65, 173, 269, 352, 368, 391
MspI	CCGG	3 cut(s)	116, 123, 157
MspR9I	CCNGG	5 cut(s)	117, 123, 124, 158, 322
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	5 cut(s)	29, 51, 172, 254, 382
MwoI	GCNNNNNNNGC	1 cut(s)	344
NciI	CCSGG	4 cut(s)	117, 123, 124, 158
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	4 cut(s)	120, 121, 161, 326
PasI	CCCWGGG	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 240
PfeI	GAWTC	2 cut(s)	139, 292
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	8 cut(s)	25, 28, 66, 114, 188, 253, 364, 367
PleI	GAGTC	2 cut(s)	223, 385
PpsI	GAGTC	2 cut(s)	223, 385
PpuMI	RGGWCCY	2 cut(s)	119, 160
PshAI	GACNNNNGTC	1 cut(s)	260
Psp5II	RGGWCCY	2 cut(s)	119, 160
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	4 cut(s)	120, 121, 161, 326
PspPI	GGNCC	3 cut(s)	119, 160, 325
PspPPI	RGGWCCY	2 cut(s)	119, 160
PsuI	RGATCY	1 cut(s)	71
SatI	GCNGC	8 cut(s)	24, 27, 65, 113, 187, 252, 363, 366
Sau3AI	GATC	1 cut(s)	71
Sau96I	GGNCC	3 cut(s)	119, 160, 325
SchI	GAGTC	2 cut(s)	224, 386
ScrFI	CCNGG	5 cut(s)	117, 123, 124, 158, 322
SduI	GDGCHC	1 cut(s)	84
SinI	GGWCC	3 cut(s)	119, 160, 325
SmaI	CCCGGG	1 cut(s)	124
SsiI	CCGC	9 cut(s)	24, 27, 49, 186, 252, 345, 363, 366, 389
StyD4I	CCNGG	5 cut(s)	115, 121, 122, 156, 320
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	6 cut(s)	15, 57, 192, 234, 303, 396
TauI	GCSGC	6 cut(s)	26, 29, 189, 254, 365, 368
TfiI	GAWTC	2 cut(s)	139, 292
TseI	GCWGC	2 cut(s)	64, 112
TspMI	CCCGGG	1 cut(s)	122
VpaK11BI	GGWCC	3 cut(s)	119, 160, 325
XmaI	CCCGGG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.