RLG00000034476

Armadillo/beta-catenin-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003535
Physical Location & Seq
Reverse (-)
43434067 .. 43434912
846 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034476

Sequence Viewer

Length: 846 bp
ATGCAACCTAAGTCATTCACCGGTGGGAAGCTCCACATGCAGAGAGACCTCGACATGGCTGCCGTGTCCCTCTCTAACCAACTCCTCGACCTCGACTTGCTGGTCAGATCTGGCTTGCTCCACCAGTCAAACGCCATCGTTTTGTCGCACCCAGATTCCGGGTCGGATAAAGAGAATCTCAGCTTCTTTATCCGGGACCTCTTCACCAGGCTGCAAATCGGCGACATCGACTTCAAGAAGAAGGCTCTGGAGTCTCTGCTTCAGCTCCTCGAAGACGACGACAAGGTCGCCAGCCTCGTTGCCAAAGAAGGAAACGTCACCTATTTGATTCACCTGCTCGATTCCACAACCAGCCTTGGGTCCGAGAACAAGCCACCTCCGCCGTCTCGCTCATCGCCGCAGCAAAGGACGAGTCGAGCAAGGCGGTGTTCGAGGAGTGGGTTTAGGCCTGTTGTTAAGACTACTCGAATCTGGGACTACCACATTGAAAGAGAAGGCGGCGATAGCCGTCGAAGCACTCACCGTCGATGGGATTCAATCAGAGACTTTAAAATGAATCCCTCACTGTCTTCTTCTTCTTCTCTGTCTTCTACTTTTGCCAGTTCCTGGTTCTTCGGGGTTGTCCGGGGCCAGTCAGATCGGGCCGGGTCAGTCAAGATAGGCTCCGACTCTGCTTCCGGTGGTTCCGGTGACTTTTCTAGTCTCGTTGTGCAGAAGAATCAATTCCAAGGGGCGCTCTTCAAGTACGGCCCCAAACCAATTCAGGTTAGGTTGAATCACAGATTGCTCATTTGTGGTTTATTTTCAGTCGAAAATGGAGTTCGAGACCTTGATCTCTGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

282

Amino Acids

31.2

Weight (kDa)

9.54

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 4 - 38 1.5e-06 Domain of unknown function (DUF7032)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 342
AasI GACNNNNNNGTC 2 cut(s) 101, 284
Acc36I ACCTGC 1 cut(s) 342
AccB7I CCANNNNNTGG 1 cut(s) 606
AciI CCGC 4 cut(s) 380, 398, 424, 498
AcuI CTGAAG 1 cut(s) 245
AfaI GTAC 1 cut(s) 746
AfiI CCNNNNNNNGG 5 cut(s) 55, 158, 357, 529, 606
AgeI ACCGGT 1 cut(s) 20
AgsI TTSAA 5 cut(s) 235, 488, 537, 742, 775
AjnI CCWGG 2 cut(s) 206, 605
AluBI AGCT 3 cut(s) 31, 183, 265
AluI AGCT 3 cut(s) 31, 183, 265
Alw26I GTCTC 6 cut(s) 39, 258, 390, 537, 707, 819
AlwNI CAGNNNCTG 1 cut(s) 606
AoxI GGCC 4 cut(s) 446, 628, 642, 748
ApeKI GCWGC 3 cut(s) 59, 211, 400
ArsI GACNNNNNNTTYG 2 cut(s) 397, 429
AsiGI ACCGGT 1 cut(s) 20
Asp700I GAANNNNTTC 1 cut(s) 722
AspLEI GCGC 1 cut(s) 736
AspS9I GGNCC 5 cut(s) 196, 360, 628, 642, 749
AsuC2I CCSGG 4 cut(s) 160, 194, 626, 646
AsuHPI GGTGA 6 cut(s) 10, 196, 310, 323, 512, 701
AvaII GGWCC 2 cut(s) 196, 360
BbsI GAAGAC 3 cut(s) 279, 561, 579
BbvI GCAGC 3 cut(s) 46, 198, 412
BccI CCATC 2 cut(s) 143, 522
BceAI ACGGC 4 cut(s) 47, 367, 492, 763
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 2 cut(s) 208, 607
BcnI CCSGG 4 cut(s) 160, 194, 626, 646
BcoDI GTCTC 6 cut(s) 39, 258, 390, 537, 707, 819
BfaI CTAG 1 cut(s) 699
BfoI RGCGCY 1 cut(s) 737
BfuAI ACCTGC 1 cut(s) 342
BglII AGATCT 1 cut(s) 107
BisI GCNGC 5 cut(s) 60, 212, 398, 401, 499
BlsI GCNGC 5 cut(s) 61, 213, 399, 402, 500
Bme1390I CCNGG 6 cut(s) 160, 194, 208, 607, 626, 646
Bme18I GGWCC 2 cut(s) 196, 360
BmgT120I GGNCC 5 cut(s) 196, 360, 628, 642, 749
BmiI GGNNCC 6 cut(s) 197, 361, 629, 664, 685, 751
BmrFI CCNGG 6 cut(s) 160, 194, 208, 607, 626, 646
BpiI GAAGAC 3 cut(s) 279, 561, 579
BpmI CTGGAG 1 cut(s) 269
BpuMI CCSGG 4 cut(s) 160, 194, 626, 646
BsaI GGTCTC 2 cut(s) 39, 819
BsaJI CCNNGG 3 cut(s) 355, 625, 727
BsaWI WCCGGW 3 cut(s) 20, 677, 686
Bsc4I CCNNNNNNNGG 5 cut(s) 55, 158, 357, 529, 606
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 3 cut(s) 124, 600, 631
BseBI CCWGG 2 cut(s) 208, 607
BseDI CCNNGG 3 cut(s) 355, 625, 727
BseLI CCNNNNNNNGG 5 cut(s) 55, 158, 357, 529, 606
BseMII CTCAG 1 cut(s) 193
BseNI ACTGG 3 cut(s) 124, 600, 631
BseRI GAGGAG 3 cut(s) 74, 257, 448
BseXI GCAGC 3 cut(s) 46, 198, 412
BsgI GTGCAG 1 cut(s) 731
BshFI GGCC 4 cut(s) 448, 630, 644, 750
BshTI ACCGGT 1 cut(s) 20
BsiSI CCGG 7 cut(s) 21, 159, 193, 625, 645, 678, 687
BslFI GGGAC 3 cut(s) 52, 209, 488
BslI CCNNNNNNNGG 5 cut(s) 55, 158, 357, 529, 606
BsmAI GTCTC 6 cut(s) 39, 258, 390, 537, 707, 819
BsmBI CGTCTC 1 cut(s) 390
BsmFI GGGAC 3 cut(s) 52, 209, 488
BsnI GGCC 4 cut(s) 448, 630, 644, 750
Bso31I GGTCTC 2 cut(s) 39, 819
Bsp143I GATC 3 cut(s) 107, 637, 832
BspACI CCGC 4 cut(s) 380, 398, 424, 498
BspANI GGCC 4 cut(s) 448, 630, 644, 750
BspCNI CTCAG 1 cut(s) 192
BspLI GGNNCC 6 cut(s) 197, 361, 629, 664, 685, 751
BspMI ACCTGC 1 cut(s) 342
BspQI GCTCTTC 1 cut(s) 743
BspTNI GGTCTC 2 cut(s) 39, 819
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 3 cut(s) 124, 600, 631
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 3 cut(s) 355, 625, 727
BssMI GATC 3 cut(s) 107, 637, 832
BssT1I CCWWGG 2 cut(s) 355, 727
Bst2UI CCWGG 2 cut(s) 208, 607
Bst4CI ACNGT 2 cut(s) 524, 567
Bst6I CTCTTC 2 cut(s) 206, 743
BstC8I GCNNGC 2 cut(s) 116, 292
BstDEI CTNAG 2 cut(s) 9, 179
BstH2I RGCGCY 1 cut(s) 737
BstHHI GCGC 1 cut(s) 736
BstKTI GATC 3 cut(s) 110, 640, 835
BstMAI GTCTC 6 cut(s) 39, 258, 390, 537, 707, 819
BstMBI GATC 3 cut(s) 107, 637, 832
BstMWI GCNNNNNNNGC 4 cut(s) 37, 379, 504, 513
BstNI CCWGG 2 cut(s) 208, 607
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 6 cut(s) 158, 192, 206, 605, 624, 644
BstV1I GCAGC 3 cut(s) 46, 198, 412
BstV2I GAAGAC 3 cut(s) 279, 561, 579
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BsuRI GGCC 4 cut(s) 448, 630, 644, 750
BtgZI GCGATG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 563
BveI ACCTGC 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 116, 292
CaiI CAGNNNCTG 1 cut(s) 606
CfoI GCGC 1 cut(s) 736
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 5 cut(s) 196, 360, 628, 642, 749
Csp6I GTAC 1 cut(s) 745
CspAI ACCGGT 1 cut(s) 20
CviAII CATG 2 cut(s) 37, 55
CviQI GTAC 1 cut(s) 745
DdeI CTNAG 2 cut(s) 9, 179
DpnI GATC 3 cut(s) 109, 639, 834
DpnII GATC 3 cut(s) 107, 637, 832
DraI TTTAAA 1 cut(s) 550
DrdI GACNNNNNNGTC 2 cut(s) 101, 284
DseDI GACNNNNNNGTC 2 cut(s) 101, 284
Eam1104I CTCTTC 2 cut(s) 206, 743
EarI CTCTTC 2 cut(s) 206, 743
EciI GGCGGA 1 cut(s) 369
Eco130I CCWWGG 2 cut(s) 355, 727
Eco147I AGGCCT 1 cut(s) 448
Eco31I GGTCTC 2 cut(s) 39, 819
Eco47I GGWCC 2 cut(s) 196, 360
Eco57I CTGAAG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 206, 605
EcoT14I CCWWGG 2 cut(s) 355, 727
ErhI CCWWGG 2 cut(s) 355, 727
Esp3I CGTCTC 1 cut(s) 390
FaeI CATG 2 cut(s) 40, 58
FaiI YATR 2 cut(s) 38, 56
FaqI GGGAC 3 cut(s) 52, 209, 488
FatI CATG 2 cut(s) 36, 54
Fnu4HI GCNGC 5 cut(s) 60, 212, 398, 401, 499
Fsp4HI GCNGC 5 cut(s) 60, 212, 398, 401, 499
FspBI CTAG 1 cut(s) 699
GlaI GCGC 1 cut(s) 735
GluI GCNGC 5 cut(s) 60, 212, 398, 401, 499
GsuI CTGGAG 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 737
HaeIII GGCC 4 cut(s) 448, 630, 644, 750
HapII CCGG 7 cut(s) 21, 159, 193, 625, 645, 678, 687
HhaI GCGC 1 cut(s) 736
Hin1II CATG 2 cut(s) 40, 58
Hin6I GCGC 1 cut(s) 734
HinP1I GCGC 1 cut(s) 734
HpaII CCGG 7 cut(s) 21, 159, 193, 625, 645, 678, 687
HphI GGTGA 6 cut(s) 10, 196, 310, 323, 512, 701
Hpy188I TCNGA 6 cut(s) 107, 166, 364, 542, 637, 667
Hpy188III TCNNGA 4 cut(s) 235, 248, 655, 824
Hpy99I CGWCG 3 cut(s) 281, 513, 528
HpyAV CCTTC 3 cut(s) 235, 302, 488
HpyCH4III ACNGT 2 cut(s) 524, 567
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 4 cut(s) 4, 40, 214, 712
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 379, 504, 513
HpyF3I CTNAG 2 cut(s) 9, 179
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 2 cut(s) 40, 58
HspAI GCGC 1 cut(s) 734
Kzo9I GATC 3 cut(s) 107, 637, 832
LguI GCTCTTC 1 cut(s) 743
LmnI GCTCC 4 cut(s) 36, 123, 270, 668
Lsp1109I GCAGC 3 cut(s) 46, 198, 412
MaeI CTAG 1 cut(s) 699
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 316, 689
MalI GATC 3 cut(s) 109, 639, 834
MboI GATC 3 cut(s) 107, 637, 832
MflI RGATCY 1 cut(s) 107
MluCI AATT 2 cut(s) 722, 759
MlyI GAGTC 3 cut(s) 260, 421, 662
MmeI TCCRAC 2 cut(s) 144, 690
MroXI GAANNNNTTC 1 cut(s) 722
MseI TTAA 2 cut(s) 456, 549
MspI CCGG 7 cut(s) 21, 159, 193, 625, 645, 678, 687
MspR9I CCNGG 6 cut(s) 160, 194, 208, 607, 626, 646
MvaI CCWGG 2 cut(s) 208, 607
MwoI GCNNNNNNNGC 4 cut(s) 37, 379, 504, 513
NciI CCSGG 4 cut(s) 160, 194, 626, 646
NdeII GATC 3 cut(s) 107, 637, 832
NlaIII CATG 2 cut(s) 40, 58
NlaIV GGNNCC 6 cut(s) 197, 361, 629, 664, 685, 751
NmuCI GTSAC 2 cut(s) 316, 689
NspI RCATGY 1 cut(s) 40
PaqCI CACCTGC 1 cut(s) 342
PceI AGGCCT 1 cut(s) 448
PciSI GCTCTTC 1 cut(s) 743
PcsI WCGNNNNNNNCGW 3 cut(s) 225, 276, 294
PdmI GAANNNNTTC 1 cut(s) 722
PfeI GAWTC 9 cut(s) 155, 175, 328, 341, 468, 533, 556, 718, 775
PflFI GACNNNGTC 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 606
PfoI TCCNGGA 1 cut(s) 192
PinAI ACCGGT 1 cut(s) 20
PkrI GCNGC 5 cut(s) 61, 213, 399, 402, 500
PleI GAGTC 3 cut(s) 259, 420, 662
PpsI GAGTC 3 cut(s) 259, 420, 662
PpuMI RGGWCCY 1 cut(s) 196
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 2 cut(s) 206, 605
PspGI CCWGG 2 cut(s) 206, 605
PspN4I GGNNCC 6 cut(s) 197, 361, 629, 664, 685, 751
PspPI GGNCC 5 cut(s) 196, 360, 628, 642, 749
PspPPI RGGWCCY 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 606
PsuI RGATCY 1 cut(s) 107
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 1 cut(s) 746
RsaNI GTAC 1 cut(s) 745
SapI GCTCTTC 1 cut(s) 743
SaqAI TTAA 2 cut(s) 456, 549
SatI GCNGC 5 cut(s) 60, 212, 398, 401, 499
Sau3AI GATC 3 cut(s) 107, 637, 832
Sau96I GGNCC 5 cut(s) 196, 360, 628, 642, 749
SchI GAGTC 3 cut(s) 260, 421, 662
ScrFI CCNGG 6 cut(s) 160, 194, 208, 607, 626, 646
SgrAI CRCCGGYG 1 cut(s) 20
SinI GGWCC 2 cut(s) 196, 360
Sse9I AATT 2 cut(s) 722, 759
SseBI AGGCCT 1 cut(s) 448
SsiI CCGC 4 cut(s) 380, 398, 424, 498
SspMI CTAG 1 cut(s) 699
StuI AGGCCT 1 cut(s) 448
StyD4I CCNGG 6 cut(s) 158, 192, 206, 605, 624, 644
StyI CCWWGG 2 cut(s) 355, 727
TaaI ACNGT 2 cut(s) 524, 567
TaiI ACGT 1 cut(s) 318
TasI AATT 2 cut(s) 722, 759
TauI GCSGC 2 cut(s) 400, 501
TfiI GAWTC 9 cut(s) 155, 175, 328, 341, 468, 533, 556, 718, 775
Tru1I TTAA 2 cut(s) 456, 549
Tru9I TTAA 2 cut(s) 456, 549
TscAI CASTG 1 cut(s) 570
TseFI GTSAC 2 cut(s) 316, 689
TseI GCWGC 3 cut(s) 59, 211, 400
Tsp45I GTSAC 2 cut(s) 316, 689
TspDTI ATGAA 1 cut(s) 569
TspRI CASTG 1 cut(s) 570
Tth111I GACNNNGTC 1 cut(s) 284
Van91I CCANNNNNTGG 1 cut(s) 606
VpaK11BI GGWCC 2 cut(s) 196, 360
XceI RCATGY 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 722
XspI CTAG 1 cut(s) 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.