Rh6CG415200

UPF0613 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003535
Physical Location & Seq
Forward (+)
59991840 .. 59992896
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG415200.1

Sequence Viewer

Length: 438 bp
ATGACTAGTCGCGCAAAGCGGTGTTCAAGGAAAGGGTTTAGGCCCGTTGTTCAGACTACTCGGATCCAGGACTACCACATTGAAAGAGAAGGCGGCGATTGCCGTCGAGGCACTCACCGTCGATGGGATTCAATCGGAGACTCTAAAATGAATCCCTCGTTGTCTTCTTCTCCATCTTCTACTTCTTCAGCTTTCGTCGGTTCCTGGTTTTCCGGCGTTGTCCGGGGCCTGTCCAACTATGTCGAGTCAGTCAAGATGGGCTCCGACTCTGCTTTCGGTGGTGACTTTTTTGGCCCCGTCGTGAGGAAGAATCAGTTCCGAGGGGCACTCTTCAAGTACGGCCCCCAACCAATTCAAGTTAGTTTGAATCAAAGATTGCACATTTGTGGTTTAATTTTAGTCGAAAATGGAGTTCAAGACCTTGATCTCTGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1749

Protein Analysis

145

Amino Acids

16.08

Weight (kDa)

9.8

Isoelectric Point (pI)

61.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 12
AciI CCGC 2 cut(s) 19, 93
AclWI GGATC 2 cut(s) 58, 71
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 124, 303
AgsI TTSAA 7 cut(s) 27, 83, 132, 334, 356, 367, 416
AhlI ACTAGT 1 cut(s) 5
AjnI CCWGG 2 cut(s) 66, 203
AleI CACNNNNGTG 1 cut(s) 384
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 2 cut(s) 58, 71
AoxI GGCC 4 cut(s) 41, 226, 292, 340
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
Asp700I GAANNNNTTC 1 cut(s) 314
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 4 cut(s) 42, 226, 293, 341
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 107, 293
BaeGI GKGCMC 1 cut(s) 328
BamHI GGATCC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 156
BccI CCATC 3 cut(s) 117, 181, 250
BceAI ACGGC 2 cut(s) 87, 355
BciT130I CCWGG 2 cut(s) 68, 205
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 132
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 1 cut(s) 6
BglI GCCNNNNNGGC 1 cut(s) 108
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme1390I CCNGG 3 cut(s) 68, 205, 224
BmgT120I GGNCC 4 cut(s) 42, 226, 293, 341
BmiI GGNNCC 6 cut(s) 65, 202, 227, 262, 295, 343
BmrFI CCNGG 3 cut(s) 68, 205, 224
BpiI GAAGAC 1 cut(s) 156
BplI GAGNNNNNCTC 2 cut(s) 312, 344
BpuMI CCSGG 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 223, 319
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 303
BseBI CCWGG 2 cut(s) 68, 205
BseDI CCNNGG 2 cut(s) 223, 319
BseLI CCNNNNNNNGG 2 cut(s) 124, 303
BseSI GKGCMC 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 4 cut(s) 43, 228, 294, 342
BsiSI CCGG 2 cut(s) 213, 223
BslI CCNNNNNNNGG 2 cut(s) 124, 303
BsmAI GTCTC 1 cut(s) 132
BsnI GGCC 4 cut(s) 43, 228, 294, 342
Bsp1286I GDGCHC 2 cut(s) 263, 328
Bsp143I GATC 2 cut(s) 63, 424
BspACI CCGC 2 cut(s) 19, 93
BspANI GGCC 4 cut(s) 43, 228, 294, 342
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 6 cut(s) 65, 202, 227, 262, 295, 343
BspPI GGATC 2 cut(s) 58, 71
BssECI CCNNGG 2 cut(s) 223, 319
BssMI GATC 2 cut(s) 63, 424
Bst2UI CCWGG 2 cut(s) 68, 205
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 1 cut(s) 335
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 2 cut(s) 66, 427
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 63, 424
BstMWI GCNNNNNNNGC 2 cut(s) 99, 108
BstNI CCWGG 2 cut(s) 68, 205
BstSCI CCNGG 3 cut(s) 66, 203, 222
BstSLI GKGCMC 1 cut(s) 328
BstUI CGCG 1 cut(s) 12
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 4 cut(s) 43, 228, 294, 342
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 4 cut(s) 42, 226, 293, 341
Csp6I GTAC 1 cut(s) 337
CviJI RGCY 6 cut(s) 43, 191, 228, 261, 294, 342
CviKI_1 RGCY 6 cut(s) 43, 191, 228, 261, 294, 342
CviQI GTAC 1 cut(s) 337
DpnI GATC 2 cut(s) 65, 426
DpnII GATC 2 cut(s) 63, 424
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Eco24I GRGCYC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 171
EcoO109I RGGNCCY 1 cut(s) 226
EcoRII CCWGG 2 cut(s) 66, 203
EcoT38I GRGCYC 1 cut(s) 263
FaiI YATR 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 94
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 94
HaeIII GGCC 4 cut(s) 43, 228, 294, 342
HapII CCGG 2 cut(s) 213, 223
HhaI GCGC 1 cut(s) 14
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 7 cut(s) 128, 140, 151, 245, 266, 310, 367
HpaII CCGG 2 cut(s) 213, 223
HphI GGTGA 2 cut(s) 107, 293
Hpy188I TCNGA 5 cut(s) 54, 63, 137, 265, 320
Hpy188III TCNNGA 3 cut(s) 253, 301, 416
Hpy99I CGWCG 4 cut(s) 108, 123, 200, 302
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 379
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 108
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 2 cut(s) 63, 424
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 7 cut(s) 53, 80, 190, 217, 226, 236, 242
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 281
MalI GATC 2 cut(s) 65, 426
MboI GATC 2 cut(s) 63, 424
MboII GAAGA 6 cut(s) 156, 159, 168, 177, 319, 322
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 2 cut(s) 263, 328
MluCI AATT 2 cut(s) 351, 393
MlyI GAGTC 3 cut(s) 134, 254, 260
MmeI TCCRAC 2 cut(s) 258, 288
MnlI CCTC 4 cut(s) 101, 166, 297, 314
MroXI GAANNNNTTC 1 cut(s) 314
MseI TTAA 1 cut(s) 392
MslI CAYNNNNRTG 1 cut(s) 384
MspI CCGG 2 cut(s) 213, 223
MspR9I CCNGG 3 cut(s) 68, 205, 224
MvaI CCWGG 2 cut(s) 68, 205
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 99, 108
NciI CCSGG 1 cut(s) 224
NdeII GATC 2 cut(s) 63, 424
NlaIV GGNNCC 6 cut(s) 65, 202, 227, 262, 295, 343
NmuCI GTSAC 1 cut(s) 281
OliI CACNNNNGTG 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 314
PfeI GAWTC 4 cut(s) 128, 151, 310, 367
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 1 cut(s) 95
PleI GAGTC 3 cut(s) 134, 253, 260
PpsI GAGTC 3 cut(s) 134, 253, 260
Psp6I CCWGG 2 cut(s) 66, 203
PspGI CCWGG 2 cut(s) 66, 203
PspN4I GGNNCC 6 cut(s) 65, 202, 227, 262, 295, 343
PspPI GGNCC 4 cut(s) 42, 226, 293, 341
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 1 cut(s) 392
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 2 cut(s) 63, 424
Sau96I GGNCC 4 cut(s) 42, 226, 293, 341
SchI GAGTC 3 cut(s) 134, 254, 260
ScrFI CCNGG 3 cut(s) 68, 205, 224
SduI GDGCHC 2 cut(s) 263, 328
SetI ASST 2 cut(s) 193, 423
SmiMI CAYNNNNRTG 1 cut(s) 384
SpeI ACTAGT 1 cut(s) 5
Sse9I AATT 2 cut(s) 351, 393
SsiI CCGC 2 cut(s) 19, 93
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 3 cut(s) 66, 203, 222
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 4 cut(s) 106, 121, 243, 402
TasI AATT 2 cut(s) 351, 393
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 4 cut(s) 128, 151, 310, 367
Tru1I TTAA 1 cut(s) 392
Tru9I TTAA 1 cut(s) 392
TseFI GTSAC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 314
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.