Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003535

Physical Location & Seq

Genomic Coordinates Reverse (-)

65122517 .. 65123321

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005113

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCCGCCGAGTCCCTCACCAACCAACTCCTCAACCTCGACTTGCTGGCCAGATCTGGCGTGCTCCACCAGTCAAACGCCATCGTTTTGTCGCACCCAGATTCCCAGTGGGATAAAGAGAATCTCAGCTTCTTTATCCGGGACCTCTTCACCAGGCTACAAATTGGCGACACCGAGTTCAAGAAGAAGGCTCTGGAGTCTCTGTTTCAGCTCCTCGAAGACGACGACAAGGCTGCCAGCCTCGTCGCCAAAGAAGGAAACGACTACCACATTGAAATAGAAGGCGGCGATAGCCGTCGAAGCACTCATCGTCGATGGGATTCAATCGGAGACTCTAGAATGAATCCCTCGCTGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCCGTCTTCTACTTTCTCCAGTTCCTGGTTCTCCAGCATTGTCCGGGGCCGGTCCAACCGGGCCGGGTCAGTCAAGATGGGCTCCGACTCAGCTTCCGGTGGTTCCAGTGACTTTTCTGGCCTCATCGTGCAGAAGAATCAATTCCACGGGGAGCTCTTCAAGTACGGCCCCAAACAAATTCAAGTTAGGTTGAATCACAGATTGCACATTTGTGGTTTATTTTCAGTCGAAAATGGAGTTCGAGACCTTGATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

215

Amino Acids

23.67

Weight (kDa)

6.38

Isoelectric Point (pI)

58.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05810 AT2G05810
fragaria_vesca	FvH4_1g21781 FvH4_3g23060 FvH4_6g42120
malus_domestica	MD09G1114400.v1.1 MD17G1106100.v1.1
prunus_persica	Prupe.3G210100_v2.0.a1
pyrus_communis	pycom09g03890 pycom17g09870
rosa_chinensis	RchiOBHm_Chr2g0158031
rosa_laevigata	RLG00000005113 RLG00000009946 RLG00000011412 RLG00000014991 RLG00000021051 RLG00000034476
rosa_multiflora	Rmu_co8383981.1_g000001 Rmu_sc0000419.1_g000016 Rmu_sc0004064.1_g000016 Rmu_sc0009909.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091730 Rroxscaffold_7G00168560
rosa_rugosa	Rorug02G0465300
rosa_samantha	Rh2AG531300 Rh2BG545800 Rh2CG515600 Rh2DG553900 Rh3AG074100 Rh3CG075500 Rh4AG058000 Rh4BG056800 Rh6AG401300 Rh6CG415200
rosa_wichuraiana	Rw2G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	411
AciI	CCGC	2 cut(s)	6, 285
AcoI	YGGCCR	2 cut(s)	3, 48
AcsI	RAATTY	1 cut(s)	564
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	1 cut(s)	411
AgsI	TTSAA	6 cut(s)	181, 275, 324, 547, 569, 580
AjnI	CCWGG	2 cut(s)	152, 410
AleI	CACNNNNGTG	1 cut(s)	597
AluBI	AGCT	4 cut(s)	129, 211, 479, 541
AluI	AGCT	4 cut(s)	129, 211, 479, 541
Alw21I	GWGCWC	2 cut(s)	66, 543
Alw26I	GTCTC	3 cut(s)	204, 324, 624
AlwNI	CAGNNNCTG	1 cut(s)	411
AoxI	GGCC	6 cut(s)	3, 48, 433, 447, 505, 553
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	527
AspS9I	GGNCC	5 cut(s)	142, 433, 438, 447, 554
AsuC2I	CCSGG	4 cut(s)	140, 431, 446, 451
AsuHPI	GGTGA	2 cut(s)	10, 142
AvaII	GGWCC	2 cut(s)	142, 438
BalI	TGGCCA	1 cut(s)	50
BanII	GRGCYC	2 cut(s)	470, 543
BbsI	GAAGAC	3 cut(s)	225, 348, 384
Bbv12I	GWGCWC	2 cut(s)	66, 543
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	3 cut(s)	89, 309, 457
BceAI	ACGGC	2 cut(s)	279, 568
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	2 cut(s)	154, 412
BcnI	CCSGG	4 cut(s)	140, 431, 446, 451
BcoDI	GTCTC	3 cut(s)	204, 324, 624
BfaI	CTAG	2 cut(s)	336, 643
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	3 cut(s)	6, 234, 286
BlsI	GCNGC	3 cut(s)	7, 235, 287
Bme1390I	CCNGG	6 cut(s)	140, 154, 412, 431, 446, 451
Bme18I	GGWCC	2 cut(s)	142, 438
BmgT120I	GGNCC	5 cut(s)	142, 433, 438, 447, 554
BmiI	GGNNCC	5 cut(s)	143, 434, 469, 490, 556
BmrFI	CCNGG	6 cut(s)	140, 154, 412, 431, 446, 451
BmrI	ACTGGG	1 cut(s)	100
BmuI	ACTGGG	1 cut(s)	100
BpiI	GAAGAC	3 cut(s)	225, 348, 384
BpmI	CTGGAG	3 cut(s)	215, 388, 403
BpuMI	CCSGG	4 cut(s)	140, 431, 446, 451
BsaI	GGTCTC	1 cut(s)	624
BsaJI	CCNNGG	2 cut(s)	430, 532
BsaWI	WCCGGW	1 cut(s)	482
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse118I	RCCGGY	1 cut(s)	435
Bse1I	ACTGG	4 cut(s)	70, 106, 405, 492
BseBI	CCWGG	2 cut(s)	154, 412
BseDI	CCNNGG	2 cut(s)	430, 532
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	139, 489
BseNI	ACTGG	4 cut(s)	70, 106, 405, 492
BseRI	GAGGAG	2 cut(s)	20, 203
BseXI	GCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	536
BshFI	GGCC	6 cut(s)	5, 50, 435, 449, 507, 555
BsiHKAI	GWGCWC	2 cut(s)	66, 543
BsiSI	CCGG	6 cut(s)	139, 430, 436, 445, 450, 483
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmAI	GTCTC	3 cut(s)	204, 324, 624
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	6 cut(s)	5, 50, 435, 449, 507, 555
Bso31I	GGTCTC	1 cut(s)	624
Bsp1286I	GDGCHC	3 cut(s)	66, 470, 543
Bsp143I	GATC	2 cut(s)	53, 637
BspACI	CCGC	2 cut(s)	6, 285
BspANI	GGCC	6 cut(s)	5, 50, 435, 449, 507, 555
BspCNI	CTCAG	2 cut(s)	138, 488
BspLI	GGNNCC	5 cut(s)	143, 434, 469, 490, 556
BspQI	GCTCTTC	1 cut(s)	548
BspTNI	GGTCTC	1 cut(s)	624
BsrFI	RCCGGY	1 cut(s)	435
BsrI	ACTGG	4 cut(s)	70, 106, 405, 492
BssAI	RCCGGY	1 cut(s)	435
BssECI	CCNNGG	2 cut(s)	430, 532
BssMI	GATC	2 cut(s)	53, 637
Bst2UI	CCWGG	2 cut(s)	154, 412
Bst6I	CTCTTC	2 cut(s)	152, 548
BstC8I	GCNNGC	3 cut(s)	48, 62, 238
BstDEI	CTNAG	2 cut(s)	125, 475
BstDSI	CCRYGG	1 cut(s)	532
BstKTI	GATC	2 cut(s)	56, 640
BstMAI	GTCTC	3 cut(s)	204, 324, 624
BstMBI	GATC	2 cut(s)	53, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	291, 300
BstNI	CCWGG	2 cut(s)	154, 412
BstSCI	CCNGG	6 cut(s)	138, 152, 410, 429, 444, 449
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	3 cut(s)	225, 348, 384
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	6 cut(s)	5, 50, 435, 449, 507, 555
BtgI	CCRYGG	1 cut(s)	532
BtsIMutI	CAGTG	2 cut(s)	113, 499
Cac8I	GCNNGC	3 cut(s)	48, 62, 238
CaiI	CAGNNNCTG	1 cut(s)	411
Cfr10I	RCCGGY	1 cut(s)	435
Cfr13I	GGNCC	5 cut(s)	142, 433, 438, 447, 554
Csp6I	GTAC	1 cut(s)	550
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	2 cut(s)	125, 475
DpnI	GATC	2 cut(s)	55, 639
DpnII	GATC	2 cut(s)	53, 637
EaeI	YGGCCR	2 cut(s)	3, 48
Eam1104I	CTCTTC	2 cut(s)	152, 548
EarI	CTCTTC	2 cut(s)	152, 548
Ecl136II	GAGCTC	1 cut(s)	541
Eco24I	GRGCYC	2 cut(s)	470, 543
Eco31I	GGTCTC	1 cut(s)	624
Eco47I	GGWCC	2 cut(s)	142, 438
Eco53kI	GAGCTC	1 cut(s)	541
EcoICRI	GAGCTC	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	152, 410
EcoT38I	GRGCYC	2 cut(s)	470, 543
FaqI	GGGAC	1 cut(s)	155
Fnu4HI	GCNGC	3 cut(s)	6, 234, 286
FriOI	GRGCYC	2 cut(s)	470, 543
Fsp4HI	GCNGC	3 cut(s)	6, 234, 286
FspBI	CTAG	2 cut(s)	336, 643
GluI	GCNGC	3 cut(s)	6, 234, 286
GsuI	CTGGAG	3 cut(s)	215, 388, 403
HaeIII	GGCC	6 cut(s)	5, 50, 435, 449, 507, 555
HapII	CCGG	6 cut(s)	139, 430, 436, 445, 450, 483
HpaII	CCGG	6 cut(s)	139, 430, 436, 445, 450, 483
HphI	GGTGA	2 cut(s)	10, 142
Hpy188I	TCNGA	2 cut(s)	329, 472
Hpy188III	TCNNGA	5 cut(s)	181, 194, 336, 460, 629
Hpy99I	CGWCG	4 cut(s)	227, 248, 300, 315
HpyAV	CCTTC	3 cut(s)	181, 248, 275
HpyCH4V	TGCA	2 cut(s)	517, 592
HpyF10VI	GCNNNNNNNGC	2 cut(s)	291, 300
HpyF3I	CTNAG	2 cut(s)	125, 475
Kzo9I	GATC	2 cut(s)	53, 637
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	4 cut(s)	69, 216, 473, 538
Lsp1109I	GCAGC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	336, 643
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	2 cut(s)	55, 639
MboI	GATC	2 cut(s)	53, 637
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	3 cut(s)	66, 470, 543
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	3 cut(s)	162, 527, 564
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	4 cut(s)	20, 206, 326, 467
MmeI	TCCRAC	2 cut(s)	465, 495
MnlI	CCTC	8 cut(s)	26, 41, 47, 155, 224, 251, 358, 518
Mox20I	TGGCCA	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	597
Msp20I	TGGCCA	1 cut(s)	50
MspI	CCGG	6 cut(s)	139, 430, 436, 445, 450, 483
MspR9I	CCNGG	6 cut(s)	140, 154, 412, 431, 446, 451
MvaI	CCWGG	2 cut(s)	154, 412
MwoI	GCNNNNNNNGC	2 cut(s)	291, 300
NciI	CCSGG	4 cut(s)	140, 431, 446, 451
NdeII	GATC	2 cut(s)	53, 637
NlaIV	GGNNCC	5 cut(s)	143, 434, 469, 490, 556
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	494
OliI	CACNNNNGTG	1 cut(s)	597
PciSI	GCTCTTC	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	6 cut(s)	101, 121, 320, 343, 523, 580
PflMI	CCANNNNNTGG	1 cut(s)	411
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	7, 235, 287
PleI	GAGTC	4 cut(s)	19, 205, 326, 467
PpsI	GAGTC	4 cut(s)	19, 205, 326, 467
PpuMI	RGGWCCY	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	543
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	152, 410
PspGI	CCWGG	2 cut(s)	152, 410
PspN4I	GGNNCC	5 cut(s)	143, 434, 469, 490, 556
PspPI	GGNCC	5 cut(s)	142, 433, 438, 447, 554
PspPPI	RGGWCCY	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	1 cut(s)	597
SacI	GAGCTC	1 cut(s)	543
SapI	GCTCTTC	1 cut(s)	548
SatI	GCNGC	3 cut(s)	6, 234, 286
Sau3AI	GATC	2 cut(s)	53, 637
Sau96I	GGNCC	5 cut(s)	142, 433, 438, 447, 554
SchI	GAGTC	4 cut(s)	20, 206, 326, 467
ScrFI	CCNGG	6 cut(s)	140, 154, 412, 431, 446, 451
SduI	GDGCHC	3 cut(s)	66, 470, 543
SetI	ASST	8 cut(s)	39, 131, 147, 213, 481, 543, 578, 636
SinI	GGWCC	2 cut(s)	142, 438
SmiMI	CAYNNNNRTG	1 cut(s)	597
Sse9I	AATT	3 cut(s)	162, 527, 564
SsiI	CCGC	2 cut(s)	6, 285
SspMI	CTAG	2 cut(s)	336, 643
SstI	GAGCTC	1 cut(s)	543
StyD4I	CCNGG	6 cut(s)	138, 152, 410, 429, 444, 449
TaqI	TCGA	6 cut(s)	39, 216, 298, 313, 615, 628
TasI	AATT	3 cut(s)	162, 527, 564
TauI	GCSGC	2 cut(s)	8, 288
TfiI	GAWTC	6 cut(s)	101, 121, 320, 343, 523, 580
TscAI	CASTG	2 cut(s)	113, 499
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	1 cut(s)	356
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	113, 499
Van91I	CCANNNNNTGG	1 cut(s)	411
VpaK11BI	GGWCC	2 cut(s)	142, 438
XapI	RAATTY	1 cut(s)	564
XbaI	TCTAGA	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	2 cut(s)	336, 643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.