Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003535

Physical Location & Seq

Genomic Coordinates Forward (+)

60374605 .. 60375325

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014991

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACCCTGCCTAGTCCCGGGTCGGATAAAGAGAATCTTAGCTTCTTTATCTGGGACCTCTTCACTCGGCTGCAAATAGGCAGCATCGAGTTCAAGAATAAGGCTCTGGAGTCTCTGCTTCAGCTTCTCGAAGACGATGACAAGGTCACCAGCCTCGTCGCCAAAGAAGGAAATGTCACCTATTTGATTCACCTACTCGATTTCCACAACCAGCCTTGGGTCCGAGAACAAGTCACCTCTGCCGTCTCATTCTTCATTTTCTTTCACCCATTCAAATTCTACATTTCAACCGATTCTTCTCTCCTTGGAATTGGATTCATACTCGTAACTTTCGAATTTCGGTTATGGTCGTCAGATTTGGCTTCAAATTTTGCAGCTGAGAATGTAGGTTCTGGGTCTCATTTGGGTACTTTTGGGTTTTGGAGAAAGAATTGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

147

Amino Acids

16.68

Weight (kDa)

5.24

Isoelectric Point (pI)

30.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05810 AT2G05810
fragaria_vesca	FvH4_1g21781 FvH4_3g23060 FvH4_6g42120
malus_domestica	MD09G1114400.v1.1 MD17G1106100.v1.1
prunus_persica	Prupe.3G210100_v2.0.a1
pyrus_communis	pycom09g03890 pycom17g09870
rosa_chinensis	RchiOBHm_Chr2g0158031
rosa_laevigata	RLG00000005113 RLG00000009946 RLG00000011412 RLG00000014991 RLG00000021051 RLG00000034476
rosa_multiflora	Rmu_co8383981.1_g000001 Rmu_sc0000419.1_g000016 Rmu_sc0004064.1_g000016 Rmu_sc0009909.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091730 Rroxscaffold_7G00168560
rosa_rugosa	Rorug02G0465300
rosa_samantha	Rh2AG531300 Rh2BG545800 Rh2CG515600 Rh2DG553900 Rh3AG074100 Rh3CG075500 Rh4AG058000 Rh4BG056800 Rh6AG401300 Rh6CG415200
rosa_wichuraiana	Rw2G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	275, 335, 367
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	2 cut(s)	17, 217
AgsI	TTSAA	4 cut(s)	94, 274, 288, 366
AluBI	AGCT	3 cut(s)	42, 124, 377
AluI	AGCT	3 cut(s)	42, 124, 377
Alw26I	GTCTC	3 cut(s)	117, 250, 402
Ama87I	CYCGRG	1 cut(s)	17
ApeKI	GCWGC	3 cut(s)	70, 81, 374
ApoI	RAATTY	3 cut(s)	275, 335, 367
AspS9I	GGNCC	2 cut(s)	55, 220
AsuC2I	CCSGG	2 cut(s)	18, 19
AsuHPI	GGTGA	5 cut(s)	139, 169, 182, 226, 257
AsuII	TTCGAA	1 cut(s)	333
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	55, 220
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	57, 93, 386
BceAI	ACGGC	1 cut(s)	227
BcnI	CCSGG	2 cut(s)	18, 19
BcoDI	GTCTC	3 cut(s)	117, 250, 402
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	3 cut(s)	71, 82, 375
BlsI	GCNGC	3 cut(s)	72, 83, 376
Bme1390I	CCNGG	2 cut(s)	18, 19
Bme18I	GGWCC	2 cut(s)	55, 220
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	2 cut(s)	55, 220
BmiI	GGNNCC	2 cut(s)	56, 221
BmrFI	CCNGG	2 cut(s)	18, 19
BmsI	GCATC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	128
Bpu14I	TTCGAA	1 cut(s)	333
BpuMI	CCSGG	2 cut(s)	18, 19
BsaI	GGTCTC	1 cut(s)	402
BsaJI	CCNNGG	3 cut(s)	17, 215, 304
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 217
BseDI	CCNNGG	3 cut(s)	17, 215, 304
BseLI	CCNNNNNNNGG	2 cut(s)	17, 217
BseMII	CTCAG	1 cut(s)	369
BseXI	GCAGC	3 cut(s)	57, 93, 386
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	17, 217
BsmAI	GTCTC	3 cut(s)	117, 250, 402
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	68
Bso31I	GGTCTC	1 cut(s)	402
BsoBI	CYCGRG	1 cut(s)	17
Bsp119I	TTCGAA	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	56, 221
BspT104I	TTCGAA	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	402
BssECI	CCNNGG	3 cut(s)	17, 215, 304
BssT1I	CCWWGG	2 cut(s)	215, 304
Bst6I	CTCTTC	1 cut(s)	65
BstBI	TTCGAA	1 cut(s)	333
BstDEI	CTNAG	2 cut(s)	38, 378
BstEII	GGTNACC	1 cut(s)	145
BstMAI	GTCTC	3 cut(s)	117, 250, 402
BstPI	GGTNACC	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	16, 17
BstV1I	GCAGC	3 cut(s)	57, 93, 386
BstV2I	GAAGAC	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	55, 220
Cfr9I	CCCGGG	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	408
CviJI	RGCY	8 cut(s)	42, 70, 104, 124, 153, 214, 362, 377
CviKI_1	RGCY	8 cut(s)	42, 70, 104, 124, 153, 214, 362, 377
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	2 cut(s)	38, 378
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	215, 304
Eco31I	GGTCTC	1 cut(s)	402
Eco47I	GGWCC	2 cut(s)	55, 220
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	17
Eco91I	GGTNACC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	215, 304
ErhI	CCWWGG	2 cut(s)	215, 304
Esp3I	CGTCTC	1 cut(s)	250
FaiI	YATR	2 cut(s)	320, 346
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	1 cut(s)	68
Fnu4HI	GCNGC	3 cut(s)	71, 82, 375
Fsp4HI	GCNGC	3 cut(s)	71, 82, 375
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	3 cut(s)	71, 82, 375
GsuI	CTGGAG	1 cut(s)	128
HapII	CCGG	1 cut(s)	18
HinfI	GANTC	5 cut(s)	34, 110, 187, 293, 315
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	5 cut(s)	139, 169, 182, 226, 257
Hpy188I	TCNGA	3 cut(s)	25, 224, 355
Hpy188III	TCNNGA	3 cut(s)	94, 107, 128
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	161
HpyCH4V	TGCA	2 cut(s)	73, 374
HpyF3I	CTNAG	2 cut(s)	38, 378
LpnPI	CCDG	7 cut(s)	20, 31, 37, 92, 163, 224, 378
Lsp1109I	GCAGC	3 cut(s)	57, 93, 386
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	4 cut(s)	145, 175, 232, 325
MboII	GAAGA	4 cut(s)	52, 143, 244, 288
MluCI	AATT	5 cut(s)	275, 309, 335, 367, 430
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	3 cut(s)	68, 164, 247
MseI	TTAA	1 cut(s)	439
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	18, 19
NciI	CCSGG	2 cut(s)	18, 19
NlaIV	GGNNCC	2 cut(s)	56, 221
NmeAIII	GCCGAG	1 cut(s)	46
NmuCI	GTSAC	3 cut(s)	145, 175, 232
NspV	TTCGAA	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PfeI	GAWTC	4 cut(s)	34, 187, 293, 315
PflFI	GACNNNGTC	1 cut(s)	143
PkrI	GCNGC	3 cut(s)	72, 83, 376
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
PspEI	GGTNACC	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	56, 221
PspPI	GGNCC	2 cut(s)	55, 220
PspPPI	RGGWCCY	1 cut(s)	55
PsyI	GACNNNGTC	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	3 cut(s)	71, 82, 375
Sau96I	GGNCC	2 cut(s)	55, 220
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	18, 19
SetI	ASST	9 cut(s)	44, 60, 126, 147, 182, 195, 239, 379, 391
SfaNI	GCATC	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	333
SinI	GGWCC	2 cut(s)	55, 220
SmaI	CCCGGG	1 cut(s)	19
Sse9I	AATT	5 cut(s)	275, 309, 335, 367, 430
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	16, 17
StyI	CCWWGG	2 cut(s)	215, 304
TaqI	TCGA	4 cut(s)	87, 129, 198, 333
TasI	AATT	5 cut(s)	275, 309, 335, 367, 430
TfiI	GAWTC	4 cut(s)	34, 187, 293, 315
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TseFI	GTSAC	3 cut(s)	145, 175, 232
TseI	GCWGC	3 cut(s)	70, 81, 374
Tsp45I	GTSAC	3 cut(s)	145, 175, 232
TspDTI	ATGAA	2 cut(s)	244, 307
TspMI	CCCGGG	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	143
VpaK11BI	GGWCC	2 cut(s)	55, 220
XapI	RAATTY	3 cut(s)	275, 335, 367
XmaI	CCCGGG	1 cut(s)	17
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.