Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003535

Physical Location & Seq

Genomic Coordinates Reverse (-)

9205242 .. 9205988

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011412

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCCGCTGCGTCCTTCACCAACCAGCTCCGTGACCTAGACTTGCTGCTCAGATCTGGCGTGCTCCACCAGTCAAATACCATCATTTTGTCGCATCCAAGTTCCGGGTTGGATAAAGAGAATCTCAGCTTCTTTATTCCGGACCTTTTCACCCAGCTGCAAATCGGCGACATCGAGTTCAAGAAGACGGCTCTGGAGTCTCTGCTTCAGCTCCACGAAGACTTCAACAAGGCCGCCTGCTCAGTGCCAATCAAGATGGGCTCCGACTCTACTTCTGGTGGTGACTTTTCTAGCCCCGTCGTGTGGAAGAATCAATTCCGAGGGGCGCTCTTCAAGTACGGCCCCAAACCAATTCAGGTTCGGTTGAATCAAAGATTGCACATTTGTGGTTTAATTTCAGTCAAAAATGGAGTTCGAGACCTTGATCTCTGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

146

Amino Acids

16.06

Weight (kDa)

7.76

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05810 AT2G05810
fragaria_vesca	FvH4_1g21781 FvH4_3g23060 FvH4_6g42120
malus_domestica	MD09G1114400.v1.1 MD17G1106100.v1.1
prunus_persica	Prupe.3G210100_v2.0.a1
pyrus_communis	pycom09g03890 pycom17g09870
rosa_chinensis	RchiOBHm_Chr2g0158031
rosa_laevigata	RLG00000005113 RLG00000009946 RLG00000011412 RLG00000014991 RLG00000021051 RLG00000034476
rosa_multiflora	Rmu_co8383981.1_g000001 Rmu_sc0000419.1_g000016 Rmu_sc0004064.1_g000016 Rmu_sc0009909.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091730 Rroxscaffold_7G00168560
rosa_rugosa	Rorug02G0465300
rosa_samantha	Rh2AG531300 Rh2BG545800 Rh2CG515600 Rh2DG553900 Rh3AG074100 Rh3CG075500 Rh4AG058000 Rh4BG056800 Rh6AG401300 Rh6CG415200
rosa_wichuraiana	Rw2G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	2 cut(s)	6, 234
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	104, 303
AgsI	TTSAA	4 cut(s)	181, 226, 334, 367
AleI	CACNNNNGTG	1 cut(s)	384
AluBI	AGCT	4 cut(s)	28, 129, 157, 211
AluI	AGCT	4 cut(s)	28, 129, 157, 211
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	2 cut(s)	204, 411
Aor13HI	TCCGGA	1 cut(s)	139
AoxI	GGCC	3 cut(s)	3, 231, 340
ApeKI	GCWGC	3 cut(s)	8, 46, 157
Asp700I	GAANNNNTTC	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	142, 341
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	3 cut(s)	10, 142, 293
AvaII	GGWCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	263
BbsI	GAAGAC	2 cut(s)	191, 225
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	33, 144
BccI	CCATC	2 cut(s)	89, 250
BceAI	ACGGC	2 cut(s)	204, 355
BcnI	CCSGG	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	204, 411
BfaI	CTAG	2 cut(s)	38, 291
BfoI	RGCGCY	1 cut(s)	329
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	5 cut(s)	6, 9, 47, 158, 234
BlsI	GCNGC	5 cut(s)	7, 10, 48, 159, 235
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	142, 341
BmiI	GGNNCC	2 cut(s)	262, 343
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	2 cut(s)	191, 225
BplI	GAGNNNNNCTC	2 cut(s)	312, 344
BpmI	CTGGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	319
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 303
Bse1I	ACTGG	1 cut(s)	70
BseAI	TCCGGA	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	2 cut(s)	104, 303
BseMII	CTCAG	3 cut(s)	64, 139, 255
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	33, 144
BseYI	CCCAGC	1 cut(s)	153
BshFI	GGCC	3 cut(s)	5, 233, 342
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	105, 140
BslI	CCNNNNNNNGG	2 cut(s)	104, 303
BsmAI	GTCTC	2 cut(s)	204, 411
BsnI	GGCC	3 cut(s)	5, 233, 342
Bso31I	GGTCTC	1 cut(s)	411
Bsp1286I	GDGCHC	2 cut(s)	66, 263
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	53, 424
BspACI	CCGC	2 cut(s)	6, 234
BspANI	GGCC	3 cut(s)	5, 233, 342
BspCNI	CTCAG	3 cut(s)	63, 138, 254
BspEI	TCCGGA	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	262, 343
BspQI	GCTCTTC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	2 cut(s)	53, 424
Bst6I	CTCTTC	1 cut(s)	335
BstC8I	GCNNGC	2 cut(s)	62, 238
BstDEI	CTNAG	3 cut(s)	50, 125, 241
BstF5I	GGATG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	2 cut(s)	56, 427
BstMAI	GTCTC	2 cut(s)	204, 411
BstMBI	GATC	2 cut(s)	53, 424
BstSCI	CCNGG	1 cut(s)	104
BstV1I	GCAGC	2 cut(s)	33, 144
BstV2I	GAAGAC	2 cut(s)	191, 225
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	3 cut(s)	5, 233, 342
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	62, 238
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	2 cut(s)	142, 341
Csp6I	GTAC	1 cut(s)	337
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	3 cut(s)	50, 125, 241
DpnI	GATC	2 cut(s)	55, 426
DpnII	GATC	2 cut(s)	53, 424
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	263
Eco31I	GGTCTC	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	263
Fnu4HI	GCNGC	5 cut(s)	6, 9, 47, 158, 234
FokI	GGATG	1 cut(s)	81
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	5 cut(s)	6, 9, 47, 158, 234
FspBI	CTAG	2 cut(s)	38, 291
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	5 cut(s)	6, 9, 47, 158, 234
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	5, 233, 342
HapII	CCGG	2 cut(s)	105, 140
HhaI	GCGC	1 cut(s)	328
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	5 cut(s)	121, 197, 266, 310, 367
HpaII	CCGG	2 cut(s)	105, 140
HphI	GGTGA	3 cut(s)	10, 142, 293
Hpy188I	TCNGA	3 cut(s)	53, 265, 320
Hpy188III	TCNNGA	5 cut(s)	140, 181, 194, 253, 416
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	160, 379
HpyF3I	CTNAG	3 cut(s)	50, 125, 241
HspAI	GCGC	1 cut(s)	326
Kpn2I	TCCGGA	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	53, 424
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	4 cut(s)	33, 69, 216, 266
Lsp1109I	GCAGC	2 cut(s)	33, 144
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	38, 291
MaeIII	GTNAC	2 cut(s)	32, 281
MalI	GATC	2 cut(s)	55, 426
MboI	GATC	2 cut(s)	53, 424
MboII	GAAGA	4 cut(s)	196, 230, 319, 322
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	2 cut(s)	66, 263
MluCI	AATT	3 cut(s)	314, 351, 393
MlyI	GAGTC	2 cut(s)	206, 260
MmeI	TCCRAC	2 cut(s)	90, 288
MnlI	CCTC	1 cut(s)	314
MroI	TCCGGA	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	314
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	384
MspA1I	CMGCKG	2 cut(s)	8, 157
MspI	CCGG	2 cut(s)	105, 140
MspR9I	CCNGG	1 cut(s)	106
NciI	CCSGG	1 cut(s)	106
NdeII	GATC	2 cut(s)	53, 424
NlaIV	GGNNCC	2 cut(s)	262, 343
NmuCI	GTSAC	2 cut(s)	32, 281
OliI	CACNNNNGTG	1 cut(s)	384
PciSI	GCTCTTC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	314
PfeI	GAWTC	3 cut(s)	121, 310, 367
PkrI	GCNGC	5 cut(s)	7, 10, 48, 159, 235
PleI	GAGTC	2 cut(s)	205, 260
PpsI	GAGTC	2 cut(s)	205, 260
PspFI	CCCAGC	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	262, 343
PspPI	GGNCC	2 cut(s)	142, 341
PsuI	RGATCY	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	384
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	5 cut(s)	6, 9, 47, 158, 234
Sau3AI	GATC	2 cut(s)	53, 424
Sau96I	GGNCC	2 cut(s)	142, 341
SchI	GAGTC	2 cut(s)	206, 260
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	2 cut(s)	66, 263
SetI	ASST	8 cut(s)	30, 39, 131, 147, 159, 213, 360, 423
SfaNI	GCATC	1 cut(s)	103
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	3 cut(s)	314, 351, 393
SsiI	CCGC	2 cut(s)	6, 234
SspMI	CTAG	2 cut(s)	38, 291
StyD4I	CCNGG	1 cut(s)	104
TaqI	TCGA	2 cut(s)	174, 415
TasI	AATT	3 cut(s)	314, 351, 393
TauI	GCSGC	2 cut(s)	8, 236
TfiI	GAWTC	3 cut(s)	121, 310, 367
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	2 cut(s)	32, 281
TseI	GCWGC	3 cut(s)	8, 46, 157
Tsp45I	GTSAC	2 cut(s)	32, 281
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	314
XspI	CTAG	2 cut(s)	38, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.