Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003535

Physical Location & Seq

Genomic Coordinates Forward (+)

59886046 .. 59887120

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG401300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCGGAGAGAACTCGACATGGTCGCCGCGTCCCTCAGCAACCAACTCCGCGACCTAGACTTGCTGATCAGATCTGGCATGCTCCACCAGTCAAATGCCATCGTTTTGTCACATCCAGGTTTCAGGTCGGATAAAGAGAATCTCAGCTTCTTTATCCAGGACCTCTTCACCAGGCTGCAAATCGGCGACATCGAGTTCAAGAAGAATGATTTGGAGTCTCTGCTTCAGCTCCGCGAAGACTACGACAAGGCCGCCTGCTCAATTTTCACAACCAGCCTTGGGTCCGAGAACAAGCCACCTCCGCCGTCTTGCTCCTCGCCGCCACAAACGACGAGTCGCGCAAAGCGGTGTTCGAGGAAAGGGTTTAGGCCCGTTGTTGAGACTACTCGGATCCAGGACTACCACATTGAAAGAGAAGGCGGCAATTGCCGTCGAGGCACTCACCGTCGATGGGATTCAATCGGAGACTCTAAAATGAATCCCTCGTTGTCTTCTTCTCCATCTTCTACTTCTTCAGCTTTCGCCAGTTCCTGGTTCTCCGGCGTTGTCCGGGGCCTGTCCAACTATGTCGGGTCAGTCAAGATGGGCTCTGACTCTGCTTTCGGTGGTGACTTTTCTGGCCCCGTCGTGAGGAAGAATCAGTTCCGAGGGGCGCTCTTCAAGTACGGCCCCCAACCAATTCAAGTTAGTTTGAATCAAAGATTGCACATTTGTGGTTTAATTTTAGTCGAAAATGGAGTTCAAGACCTTGATCTCTGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

254

Amino Acids

28.19

Weight (kDa)

9.09

Isoelectric Point (pI)

64.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05810 AT2G05810
fragaria_vesca	FvH4_1g21781 FvH4_3g23060 FvH4_6g42120
malus_domestica	MD09G1114400.v1.1 MD17G1106100.v1.1
prunus_persica	Prupe.3G210100_v2.0.a1
pyrus_communis	pycom09g03890 pycom17g09870
rosa_chinensis	RchiOBHm_Chr2g0158031
rosa_laevigata	RLG00000005113 RLG00000009946 RLG00000011412 RLG00000014991 RLG00000021051 RLG00000034476
rosa_multiflora	Rmu_co8383981.1_g000001 Rmu_sc0000419.1_g000016 Rmu_sc0004064.1_g000016 Rmu_sc0009909.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091730 Rroxscaffold_7G00168560
rosa_rugosa	Rorug02G0465300
rosa_samantha	Rh2AG531300 Rh2BG545800 Rh2CG515600 Rh2DG553900 Rh3AG074100 Rh3CG075500 Rh4AG058000 Rh4BG056800 Rh6AG401300 Rh6CG415200
rosa_wichuraiana	Rw2G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	531
AccII	CGCG	4 cut(s)	29, 51, 234, 339
AciI	CCGC	9 cut(s)	4, 27, 49, 232, 252, 302, 320, 346, 420
AclWI	GGATC	2 cut(s)	385, 398
AcuI	CTGAAG	2 cut(s)	209, 498
AfaI	GTAC	1 cut(s)	665
AfiI	CCNNNNNNNGG	4 cut(s)	279, 451, 531, 630
AgsI	TTSAA	7 cut(s)	199, 410, 459, 661, 683, 694, 743
AjnI	CCWGG	5 cut(s)	115, 156, 170, 393, 530
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AleI	CACNNNNGTG	1 cut(s)	711
AluBI	AGCT	3 cut(s)	147, 229, 518
AluI	AGCT	3 cut(s)	147, 229, 518
Alw26I	GTCTC	3 cut(s)	222, 374, 459
AlwI	GGATC	2 cut(s)	385, 398
AlwNI	CAGNNNCTG	1 cut(s)	531
AoxI	GGCC	5 cut(s)	249, 368, 553, 619, 667
ApeKI	GCWGC	1 cut(s)	175
ArsI	GACNNNNNNTTYG	4 cut(s)	319, 351, 584, 616
Asp700I	GAANNNNTTC	1 cut(s)	641
AspLEI	GCGC	2 cut(s)	341, 655
AspS9I	GGNCC	6 cut(s)	160, 282, 369, 553, 620, 668
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	3 cut(s)	160, 434, 620
AvaII	GGWCC	2 cut(s)	160, 282
BamHI	GGATCC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	590
BbsI	GAAGAC	2 cut(s)	243, 483
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	4 cut(s)	107, 444, 508, 577
BceAI	ACGGC	3 cut(s)	289, 414, 682
BciT130I	CCWGG	5 cut(s)	117, 158, 172, 395, 532
BclI	TGATCA	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	551
BcoDI	GTCTC	3 cut(s)	222, 374, 459
BfaI	CTAG	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	656
BglI	GCCNNNNNGGC	1 cut(s)	435
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	5 cut(s)	27, 176, 252, 320, 421
BlsI	GCNGC	5 cut(s)	28, 177, 253, 321, 422
Bme1390I	CCNGG	6 cut(s)	117, 158, 172, 395, 532, 551
Bme18I	GGWCC	2 cut(s)	160, 282
BmgT120I	GGNCC	6 cut(s)	160, 282, 369, 553, 620, 668
BmiI	GGNNCC	5 cut(s)	283, 392, 554, 622, 670
BmrFI	CCNGG	6 cut(s)	117, 158, 172, 395, 532, 551
BpiI	GAAGAC	2 cut(s)	243, 483
BplI	GAGNNNNNCTC	2 cut(s)	639, 671
Bpu10I	CCTNAGC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	551
BsaJI	CCNNGG	3 cut(s)	277, 550, 646
Bsc4I	CCNNNNNNNGG	4 cut(s)	279, 451, 531, 630
Bse1I	ACTGG	2 cut(s)	88, 525
BseBI	CCWGG	5 cut(s)	117, 158, 172, 395, 532
BseDI	CCNNGG	3 cut(s)	277, 550, 646
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	4 cut(s)	279, 451, 531, 630
BseMII	CTCAG	2 cut(s)	49, 157
BseNI	ACTGG	2 cut(s)	88, 525
BseRI	GAGGAG	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	162
Bsh1236I	CGCG	4 cut(s)	29, 51, 234, 339
BshFI	GGCC	5 cut(s)	251, 370, 555, 621, 669
BsiSI	CCGG	2 cut(s)	540, 550
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	4 cut(s)	279, 451, 531, 630
BsmAI	GTCTC	3 cut(s)	222, 374, 459
BsmFI	GGGAC	1 cut(s)	16
BsnI	GGCC	5 cut(s)	251, 370, 555, 621, 669
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp143I	GATC	4 cut(s)	66, 71, 390, 751
BspACI	CCGC	9 cut(s)	4, 27, 49, 232, 252, 302, 320, 346, 420
BspANI	GGCC	5 cut(s)	251, 370, 555, 621, 669
BspCNI	CTCAG	2 cut(s)	48, 156
BspFNI	CGCG	4 cut(s)	29, 51, 234, 339
BspLI	GGNNCC	5 cut(s)	283, 392, 554, 622, 670
BspPI	GGATC	2 cut(s)	385, 398
BspQI	GCTCTTC	1 cut(s)	662
BsrI	ACTGG	2 cut(s)	88, 525
BssECI	CCNNGG	3 cut(s)	277, 550, 646
BssMI	GATC	4 cut(s)	66, 71, 390, 751
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	5 cut(s)	117, 158, 172, 395, 532
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	2 cut(s)	170, 662
BstC8I	GCNNGC	2 cut(s)	80, 256
BstDEI	CTNAG	2 cut(s)	35, 143
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	4 cut(s)	29, 51, 234, 339
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	2 cut(s)	341, 655
BstKTI	GATC	4 cut(s)	69, 74, 393, 754
BstMAI	GTCTC	3 cut(s)	222, 374, 459
BstMBI	GATC	4 cut(s)	66, 71, 390, 751
BstMWI	GCNNNNNNNGC	3 cut(s)	301, 426, 435
BstNI	CCWGG	5 cut(s)	117, 158, 172, 395, 532
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	6 cut(s)	115, 156, 170, 393, 530, 549
BstUI	CGCG	4 cut(s)	29, 51, 234, 339
BstV1I	GCAGC	1 cut(s)	162
BstV2I	GAAGAC	2 cut(s)	243, 483
BstX2I	RGATCY	2 cut(s)	71, 390
BstYI	RGATCY	2 cut(s)	71, 390
BsuRI	GGCC	5 cut(s)	251, 370, 555, 621, 669
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	80, 256
CaiI	CAGNNNCTG	1 cut(s)	531
CfoI	GCGC	2 cut(s)	341, 655
Cfr13I	GGNCC	6 cut(s)	160, 282, 369, 553, 620, 668
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	664
CviAII	CATG	2 cut(s)	19, 79
CviQI	GTAC	1 cut(s)	664
DdeI	CTNAG	2 cut(s)	35, 143
DpnI	GATC	4 cut(s)	68, 73, 392, 753
DpnII	GATC	4 cut(s)	66, 71, 390, 751
Eam1104I	CTCTTC	2 cut(s)	170, 662
EarI	CTCTTC	2 cut(s)	170, 662
EciI	GGCGGA	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	590
Eco47I	GGWCC	2 cut(s)	160, 282
Eco57I	CTGAAG	2 cut(s)	209, 498
EcoO109I	RGGNCCY	2 cut(s)	160, 553
EcoRII	CCWGG	5 cut(s)	115, 156, 170, 393, 530
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	590
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	2 cut(s)	22, 82
FaiI	YATR	3 cut(s)	20, 80, 567
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	2 cut(s)	18, 78
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	5 cut(s)	27, 176, 252, 320, 421
FokI	GGATG	1 cut(s)	99
FriOI	GRGCYC	1 cut(s)	590
Fsp4HI	GCNGC	5 cut(s)	27, 176, 252, 320, 421
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	2 cut(s)	340, 654
GluI	GCNGC	5 cut(s)	27, 176, 252, 320, 421
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	5 cut(s)	251, 370, 555, 621, 669
HapII	CCGG	2 cut(s)	540, 550
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	2 cut(s)	341, 655
Hin1II	CATG	2 cut(s)	22, 82
Hin6I	GCGC	2 cut(s)	339, 653
HinP1I	GCGC	2 cut(s)	339, 653
HinfI	GANTC	9 cut(s)	139, 215, 334, 455, 467, 478, 593, 637, 694
HpaII	CCGG	2 cut(s)	540, 550
HphI	GGTGA	3 cut(s)	160, 434, 620
Hpy188I	TCNGA	7 cut(s)	71, 130, 286, 390, 464, 592, 647
Hpy188III	TCNNGA	4 cut(s)	199, 580, 628, 743
Hpy99I	CGWCG	4 cut(s)	334, 435, 450, 629
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4V	TGCA	2 cut(s)	178, 706
HpyF10VI	GCNNNNNNNGC	3 cut(s)	301, 426, 435
HpyF3I	CTNAG	2 cut(s)	35, 143
Hsp92II	CATG	2 cut(s)	22, 82
HspAI	GCGC	2 cut(s)	339, 653
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	66, 71, 390, 751
LguI	GCTCTTC	1 cut(s)	662
LmnI	GCTCC	3 cut(s)	87, 234, 317
Lsp1109I	GCAGC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	108, 608
MalI	GATC	4 cut(s)	68, 73, 392, 753
MboI	GATC	4 cut(s)	66, 71, 390, 751
MboII	GAAGA	9 cut(s)	157, 214, 248, 483, 486, 495, 504, 646, 649
MfeI	CAATTG	1 cut(s)	424
MflI	RGATCY	2 cut(s)	71, 390
MhlI	GDGCHC	1 cut(s)	590
MluCI	AATT	4 cut(s)	261, 424, 678, 720
MlyI	GAGTC	4 cut(s)	224, 343, 461, 587
MmeI	TCCRAC	2 cut(s)	108, 585
MnlI	CCTC	9 cut(s)	44, 173, 309, 325, 348, 428, 493, 624, 641
MroXI	GAANNNNTTC	1 cut(s)	641
MseI	TTAA	1 cut(s)	719
MslI	CAYNNNNRTG	1 cut(s)	711
MspI	CCGG	2 cut(s)	540, 550
MspR9I	CCNGG	6 cut(s)	117, 158, 172, 395, 532, 551
MunI	CAATTG	1 cut(s)	424
MvaI	CCWGG	5 cut(s)	117, 158, 172, 395, 532
MvnI	CGCG	4 cut(s)	29, 51, 234, 339
MwoI	GCNNNNNNNGC	3 cut(s)	301, 426, 435
NciI	CCSGG	1 cut(s)	551
NdeII	GATC	4 cut(s)	66, 71, 390, 751
NlaIII	CATG	2 cut(s)	22, 82
NlaIV	GGNNCC	5 cut(s)	283, 392, 554, 622, 670
NmuCI	GTSAC	2 cut(s)	108, 608
NspI	RCATGY	1 cut(s)	82
OliI	CACNNNNGTG	1 cut(s)	711
PaeI	GCATGC	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	662
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	641
PfeI	GAWTC	5 cut(s)	139, 455, 478, 637, 694
PflFI	GACNNNGTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	531
PfoI	TCCNGGA	2 cut(s)	156, 393
PkrI	GCNGC	5 cut(s)	28, 177, 253, 321, 422
PleI	GAGTC	4 cut(s)	223, 342, 461, 587
PpsI	GAGTC	4 cut(s)	223, 342, 461, 587
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	5 cut(s)	115, 156, 170, 393, 530
PspGI	CCWGG	5 cut(s)	115, 156, 170, 393, 530
PspN4I	GGNNCC	5 cut(s)	283, 392, 554, 622, 670
PspPI	GGNCC	6 cut(s)	160, 282, 369, 553, 620, 668
PspPPI	RGGWCCY	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	531
PsuI	RGATCY	2 cut(s)	71, 390
PsyI	GACNNNGTC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	665
RsaNI	GTAC	1 cut(s)	664
RseI	CAYNNNNRTG	1 cut(s)	711
SapI	GCTCTTC	1 cut(s)	662
SaqAI	TTAA	1 cut(s)	719
SatI	GCNGC	5 cut(s)	27, 176, 252, 320, 421
Sau3AI	GATC	4 cut(s)	66, 71, 390, 751
Sau96I	GGNCC	6 cut(s)	160, 282, 369, 553, 620, 668
SchI	GAGTC	4 cut(s)	224, 343, 461, 587
ScrFI	CCNGG	6 cut(s)	117, 158, 172, 395, 532, 551
SduI	GDGCHC	1 cut(s)	590
SetI	ASST	9 cut(s)	57, 121, 128, 149, 165, 231, 301, 520, 750
SinI	GGWCC	2 cut(s)	160, 282
SmiMI	CAYNNNNRTG	1 cut(s)	711
SphI	GCATGC	1 cut(s)	82
Sse9I	AATT	4 cut(s)	261, 424, 678, 720
SsiI	CCGC	9 cut(s)	4, 27, 49, 232, 252, 302, 320, 346, 420
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	6 cut(s)	115, 156, 170, 393, 530, 549
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	446
TaqI	TCGA	6 cut(s)	15, 192, 353, 433, 448, 729
TasI	AATT	4 cut(s)	261, 424, 678, 720
TauI	GCSGC	4 cut(s)	29, 254, 322, 423
TfiI	GAWTC	5 cut(s)	139, 455, 478, 637, 694
Tru1I	TTAA	1 cut(s)	719
Tru9I	TTAA	1 cut(s)	719
TseFI	GTSAC	2 cut(s)	108, 608
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	2 cut(s)	108, 608
TspDTI	ATGAA	1 cut(s)	491
Tth111I	GACNNNGTC	1 cut(s)	20
Van91I	CCANNNNNTGG	1 cut(s)	531
VpaK11BI	GGWCC	2 cut(s)	160, 282
XceI	RCATGY	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	641
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.