Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003535

Physical Location & Seq

Genomic Coordinates Forward (+)

75973523 .. 75976522

Gene Structure 3000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG531300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1704 bp

ATGCAGAGCGCCACCTCCCCCCTCCAAACCCTCCTCGACCTCATCAACGAGACCCTCTCCCTCATCCTCCGCACCTCCCTCACCGTCCGGTCCTTCGCCGGCCGCTGGCAGCCCCTCCGCACCAAGCTCGCCTCCCTCCAGACCTCCGTCGCCGACATCTCCGACTCCCCCCACTGGGCCGAGAACCCCCTCCTCTACACTCTCCTCCCCAACCTCCTCTCCACTCTCCAGCGCCTCAAGGCCCTCGCCGACCAATGCAACGACACGTCGTTCACCGGCGGGAAGCTCCACATGCAGAGCGACCTCGACATGGCCGCCGCGTCCCTCACCAACCAGCTCCGCGACCTCGACCTGCTGCTCAGATCTGGCGTGCTCCACCAGTCAAACGCCATCGTTTTGTCGCACCCGGGTCCCGGGTCGGATAAAGAGAATCTCAGCTTCTTTATCCGGGACCTCTTCACGCGTCTGCAAATCGGCGGCGTCGAGTTCAAGAAGAAGGCTCTAGAGTCTCTGCTTCAGCTTCTCGAAGACGACGACAAGGCGGCGACCCTCGTCGCCAAAGAAGGAAACGTCGCCTATTTGATTCACCTTCTCGATTTCCACAACCAGCCTTGGGTCCGAGAACAGGCCGCCTCCGCCGTCTCGCTCCTCGCCGCCGCAAACGAAGAGTCGCGCAAGGCGGTGTTCGAAGAAGGGGGTTTAGGCCCGTTGCTGAGACTGCTCGAATCCGGGACTACCACATTGAAAGAGAAAGCGGCAATCGCCGTCGAGGCGCTCACCGCCGACCCGGAAAACGCCTGGGCCGTTTCAGCCTACGGCGGCGTTTCGGTCTTGATCGAATCCATTCGATCCGGGACTCCGGCGACGCAGACCCACTCGGTCGGCGCCATTCGAAACGTGGCTGACGTGGAGGAGATCAAGATGGCTTTAGGAGAAGAAGGGGCTGTGCCAGTGCTACTCCAATTGCTCCTCTCCGGCAGTGGCACCATCACCGCCCAAGAGAAATCGGCCAATTGCATAGCGATTTTAGCCTCAACCGATGAGTATTTCCGAGCTTTGATCATCCAAGAACGCGGCCTGCAGAGATTGATGCATTTGATCCAGGACTTACTGAGCTCGGAGACGTTGGAACACGTGCTCCGAGCCATCGCTTCGCTTTCGGCATCAGAGCCCTGCGCTCGAGTCCTGTCATCTTCAACCTTGTTCCTAATTCAATTGGCCGAGTTCATAAAGCAGGGTAGCTCAATCCTCCAGCAAATCTCAGTTTCTTTGCTTTCGAATCTATCAATTAGTATCAGCGATGGGAATAAGCGAGCCATTAGTAGCTGTATGGGGTCATTGGTCAAGCTCATGGAGTCGCCAAAACCGGTGGGGCTACAAGAATCGGCGTCGCAAGCTCTGGTTTCGCTGTTGACGGTCCGGTCGAACCGGAAAGAGTTGGTTAGGGACGAGAAGAGCGTGATGAGGCTGATTCAGATGTTGGATCCCAGAAACGAAGCAGTGAGCCACAAGTTTCCGGTGATGGTAATCTCGGCGATACTCGCCGGAGGAAGCCAAGGATGCAGGAAGAGGCTCGCGGCGGCCGGAGCTCAGCCACATTTACAGAAGCTAGCGGAGATGGAGGTCGCCGGAGCCAAGAAGGCGTTGCAGAGACTCTCCGGCAATAGGCTAAAGACCATTTTCTCCCTGACTTGGAGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

567

Amino Acids

61.34

Weight (kDa)

6.63

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7032	PF23005	16 - 124	2e-33	Domain of unknown function (DUF7032)
ARM_ARMC5	PF24768	178 - 384	4.5e-13	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05810 AT2G05810
fragaria_vesca	FvH4_1g21781 FvH4_3g23060 FvH4_6g42120
malus_domestica	MD09G1114400.v1.1 MD17G1106100.v1.1
prunus_persica	Prupe.3G210100_v2.0.a1
pyrus_communis	pycom09g03890 pycom17g09870
rosa_chinensis	RchiOBHm_Chr2g0158031
rosa_laevigata	RLG00000005113 RLG00000009946 RLG00000011412 RLG00000014991 RLG00000021051 RLG00000034476
rosa_multiflora	Rmu_co8383981.1_g000001 Rmu_sc0000419.1_g000016 Rmu_sc0004064.1_g000016 Rmu_sc0009909.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091730 Rroxscaffold_7G00168560
rosa_rugosa	Rorug02G0465300
rosa_samantha	Rh2AG531300 Rh2BG545800 Rh2CG515600 Rh2DG553900 Rh3AG074100 Rh3CG075500 Rh4AG058000 Rh4BG056800 Rh6AG401300 Rh6CG415200
rosa_wichuraiana	Rw2G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1420
Acc36I	ACCTGC	1 cut(s)	360
AccB1I	GGYRCC	2 cut(s)	884, 983
AccII	CGCG	6 cut(s)	320, 342, 463, 673, 1074, 1577
AclWI	GGATC	4 cut(s)	843, 1093, 1478, 1491
AcoI	YGGCCR	5 cut(s)	100, 312, 1008, 1218, 1581
AcuI	CTGAAG	1 cut(s)	500
AcvI	CACGTG	1 cut(s)	1135
AcyI	GRCGYC	3 cut(s)	480, 885, 1388
AfiI	CCNNNNNNNGG	9 cut(s)	105, 174, 175, 310, 413, 613, 625, 1665, 1692
AflIII	ACRYGT	3 cut(s)	264, 461, 1132
AgeI	ACCGGT	1 cut(s)	1366
AgsI	TTSAA	4 cut(s)	490, 745, 1197, 1214
AjiI	CACGTC	2 cut(s)	267, 907
AjnI	CCWGG	2 cut(s)	797, 1101
AloI	GAACNNNNNNTCC	2 cut(s)	1122, 1154
Alw21I	GWGCWC	4 cut(s)	375, 1118, 1140, 1591
Alw26I	GTCTC	6 cut(s)	44, 513, 646, 709, 1115, 1645
AlwI	GGATC	4 cut(s)	843, 1093, 1478, 1491
Ama87I	CYCGRG	3 cut(s)	406, 413, 1179
ApeKI	GCWGC	2 cut(s)	109, 355
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
AsiGI	ACCGGT	1 cut(s)	1366
Asp700I	GAANNNNTTC	1 cut(s)	843
AspLEI	GCGC	6 cut(s)	11, 234, 675, 775, 887, 1178
AspS9I	GGNCC	9 cut(s)	90, 177, 241, 410, 451, 616, 704, 801, 1417
AsuC2I	CCSGG	8 cut(s)	407, 408, 414, 415, 449, 730, 788, 853
AsuHPI	GGTGA	7 cut(s)	73, 265, 319, 578, 769, 982, 1531
AsuII	TTCGAA	3 cut(s)	687, 892, 1277
AsuNHI	GCTAGC	1 cut(s)	1609
AvaI	CYCGRG	3 cut(s)	406, 413, 1179
AvaII	GGWCC	5 cut(s)	90, 410, 451, 616, 1417
BamHI	GGATCC	1 cut(s)	1483
BanI	GGYRCC	2 cut(s)	884, 983
BanII	GRGCYC	3 cut(s)	1118, 1173, 1591
BbrPI	CACGTG	1 cut(s)	1135
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	4 cut(s)	375, 1118, 1140, 1591
BbvI	GCAGC	2 cut(s)	121, 342
BccI	CCATC	7 cut(s)	398, 916, 995, 1154, 1295, 1516, 1612
BceAI	ACGGC	4 cut(s)	623, 749, 788, 832
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	2 cut(s)	799, 1103
BclI	TGATCA	1 cut(s)	1059
BcnI	CCSGG	8 cut(s)	407, 408, 414, 415, 449, 730, 788, 853
BcoDI	GTCTC	6 cut(s)	44, 513, 646, 709, 1115, 1645
BfaI	CTAG	2 cut(s)	503, 1610
BfmI	CTRYAG	1 cut(s)	1079
BfoI	RGCGCY	4 cut(s)	12, 235, 776, 888
BfuAI	ACCTGC	1 cut(s)	360
BglI	GCCNNNNNGGC	2 cut(s)	770, 1640
BglII	AGATCT	1 cut(s)	362
BlpI	GCTNAGC	1 cut(s)	1590
Bme18I	GGWCC	5 cut(s)	90, 410, 451, 616, 1417
BmeT110I	CYCGRG	3 cut(s)	406, 413, 1179
BmgBI	CACGTC	2 cut(s)	267, 907
BmgT120I	GGNCC	9 cut(s)	90, 177, 241, 410, 451, 616, 704, 801, 1417
BmiI	GGNNCC	8 cut(s)	411, 412, 452, 617, 886, 985, 1485, 1633
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	3 cut(s)	1080, 1172, 1550
BmtI	GCTAGC	1 cut(s)	1613
BmuI	ACTGGG	1 cut(s)	184
BoxI	GACNNNNGTC	2 cut(s)	146, 551
BpiI	GAAGAC	1 cut(s)	534
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpmI	CTGGAG	3 cut(s)	122, 212, 1235
Bpu1102I	GCTNAGC	1 cut(s)	1590
Bpu14I	TTCGAA	3 cut(s)	687, 892, 1277
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	8 cut(s)	407, 408, 414, 415, 449, 730, 788, 853
BsaAI	YACGTR	1 cut(s)	1135
BsaBI	GATNNNNATC	1 cut(s)	1526
BsaHI	GRCGYC	3 cut(s)	480, 885, 1388
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	5 cut(s)	406, 413, 611, 798, 1555
BsaWI	WCCGGW	5 cut(s)	87, 1366, 1419, 1428, 1516
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 1122, 1152
Bsc4I	CCNNNNNNNGG	9 cut(s)	105, 174, 175, 310, 413, 613, 625, 1665, 1692
Bse118I	RCCGGY	3 cut(s)	98, 275, 1366
Bse1I	ACTGG	3 cut(s)	179, 379, 950
Bse8I	GATNNNNATC	1 cut(s)	1526
BseBI	CCWGG	2 cut(s)	799, 1103
BseDI	CCNNGG	5 cut(s)	406, 413, 611, 798, 1555
BseGI	GGATG	3 cut(s)	63, 1062, 1565
BseJI	GATNNNNATC	1 cut(s)	1526
BseLI	CCNNNNNNNGG	9 cut(s)	105, 174, 175, 310, 413, 613, 625, 1665, 1692
BseMII	CTCAG	6 cut(s)	373, 448, 704, 1103, 1275, 1604
BseNI	ACTGG	3 cut(s)	179, 379, 950
BseRI	GAGGAG	7 cut(s)	23, 182, 194, 206, 638, 926, 959
BseX3I	CGGCCG	2 cut(s)	100, 1581
BseXI	GCAGC	2 cut(s)	121, 342
Bsh1236I	CGCG	6 cut(s)	320, 342, 463, 673, 1074, 1577
Bsh1285I	CGRYCG	4 cut(s)	103, 882, 1424, 1584
BshNI	GGYRCC	2 cut(s)	884, 983
BshTI	ACCGGT	1 cut(s)	1366
BsiEI	CGRYCG	4 cut(s)	103, 882, 1424, 1584
BsiHKAI	GWGCWC	4 cut(s)	375, 1118, 1140, 1591
BsiHKCI	CYCGRG	3 cut(s)	406, 413, 1179
BslFI	GGGAC	6 cut(s)	307, 396, 464, 745, 868, 1460
BslI	CCNNNNNNNGG	9 cut(s)	105, 174, 175, 310, 413, 613, 625, 1665, 1692
BsmAI	GTCTC	6 cut(s)	44, 513, 646, 709, 1115, 1645
BsmBI	CGTCTC	2 cut(s)	646, 1115
BsmFI	GGGAC	6 cut(s)	307, 396, 464, 745, 868, 1460
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	3 cut(s)	406, 413, 1179
Bsp119I	TTCGAA	3 cut(s)	687, 892, 1277
Bsp1286I	GDGCHC	5 cut(s)	375, 1118, 1140, 1173, 1591
Bsp143I	GATC	7 cut(s)	362, 834, 848, 915, 1059, 1098, 1483
Bsp1720I	GCTNAGC	1 cut(s)	1590
BspCNI	CTCAG	6 cut(s)	372, 447, 705, 1104, 1274, 1603
BspFNI	CGCG	6 cut(s)	320, 342, 463, 673, 1074, 1577
BspLI	GGNNCC	8 cut(s)	411, 412, 452, 617, 886, 985, 1485, 1633
BspMAI	CTGCAG	1 cut(s)	1083
BspMI	ACCTGC	1 cut(s)	360
BspOI	GCTAGC	1 cut(s)	1613
BspPI	GGATC	4 cut(s)	843, 1093, 1478, 1491
BspQI	GCTCTTC	1 cut(s)	1448
BspT104I	TTCGAA	3 cut(s)	687, 892, 1277
BspT107I	GGYRCC	2 cut(s)	884, 983
BspTNI	GGTCTC	1 cut(s)	44
BsrFI	RCCGGY	3 cut(s)	98, 275, 1366
BsrI	ACTGG	3 cut(s)	179, 379, 950
BssAI	RCCGGY	3 cut(s)	98, 275, 1366
BssECI	CCNNGG	5 cut(s)	406, 413, 611, 798, 1555
BssMI	GATC	7 cut(s)	362, 834, 848, 915, 1059, 1098, 1483
BssNI	GRCGYC	3 cut(s)	480, 885, 1388
BssT1I	CCWWGG	2 cut(s)	611, 1555
Bst2UI	CCWGG	2 cut(s)	799, 1103
Bst4CI	ACNGT	2 cut(s)	85, 1417
Bst6I	CTCTTC	4 cut(s)	461, 660, 1448, 1562
BstACI	GRCGYC	3 cut(s)	480, 885, 1388
BstBAI	YACGTR	1 cut(s)	1135
BstBI	TTCGAA	3 cut(s)	687, 892, 1277
BstC8I	GCNNGC	9 cut(s)	100, 107, 129, 371, 1079, 1314, 1395, 1575, 1611
BstDEI	CTNAG	6 cut(s)	359, 434, 713, 1112, 1261, 1590
BstF5I	GGATG	3 cut(s)	63, 1062, 1565
BstFNI	CGCG	6 cut(s)	320, 342, 463, 673, 1074, 1577
BstH2I	RGCGCY	4 cut(s)	12, 235, 776, 888
BstHHI	GCGC	6 cut(s)	11, 234, 675, 775, 887, 1178
BstKTI	GATC	7 cut(s)	365, 837, 851, 918, 1062, 1101, 1486
BstMAI	GTCTC	6 cut(s)	44, 513, 646, 709, 1115, 1645
BstMBI	GATC	7 cut(s)	362, 834, 848, 915, 1059, 1098, 1483
BstMCI	CGRYCG	4 cut(s)	103, 882, 1424, 1584
BstNI	CCWGG	2 cut(s)	799, 1103
BstNSI	RCATGY	1 cut(s)	295
BstPAI	GACNNNNGTC	2 cut(s)	146, 551
BstSFI	CTRYAG	1 cut(s)	1079
BstUI	CGCG	6 cut(s)	320, 342, 463, 673, 1074, 1577
BstV1I	GCAGC	2 cut(s)	121, 342
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	2 cut(s)	362, 1483
BstYI	RGATCY	2 cut(s)	362, 1483
BstZI	CGGCCG	2 cut(s)	100, 1581
BtgZI	GCGATG	2 cut(s)	1132, 1314
BtrI	CACGTC	2 cut(s)	267, 907
BtsCI	GGATG	3 cut(s)	63, 1062, 1565
BtsI	GCAGTG	2 cut(s)	985, 1506
BtsIMutI	CAGTG	4 cut(s)	172, 957, 985, 1506
BveI	ACCTGC	1 cut(s)	360
Cac8I	GCNNGC	9 cut(s)	100, 107, 129, 371, 1079, 1314, 1395, 1575, 1611
CfoI	GCGC	6 cut(s)	11, 234, 675, 775, 887, 1178
Cfr10I	RCCGGY	3 cut(s)	98, 275, 1366
Cfr13I	GGNCC	9 cut(s)	90, 177, 241, 410, 451, 616, 704, 801, 1417
Cfr9I	CCCGGG	2 cut(s)	406, 413
CpoI	CGGWCCG	1 cut(s)	1417
CseI	GACGC	5 cut(s)	309, 452, 469, 874, 1377
CspAI	ACCGGT	1 cut(s)	1366
CspCI	CAANNNNNGTGG	2 cut(s)	1350, 1385
CspI	CGGWCCG	1 cut(s)	1417
CviAII	CATG	3 cut(s)	292, 310, 1351
DdeI	CTNAG	6 cut(s)	359, 434, 713, 1112, 1261, 1590
DinI	GGCGCC	1 cut(s)	886
DpnI	GATC	7 cut(s)	364, 836, 850, 917, 1061, 1100, 1485
DpnII	GATC	7 cut(s)	362, 834, 848, 915, 1059, 1098, 1483
DrdI	GACNNNNNNGTC	1 cut(s)	1420
DseDI	GACNNNNNNGTC	1 cut(s)	1420
EaeI	YGGCCR	5 cut(s)	100, 312, 1008, 1218, 1581
EagI	CGGCCG	2 cut(s)	100, 1581
Eam1104I	CTCTTC	4 cut(s)	461, 660, 1448, 1562
EarI	CTCTTC	4 cut(s)	461, 660, 1448, 1562
EciI	GGCGGA	1 cut(s)	625
Ecl136II	GAGCTC	2 cut(s)	1116, 1589
EclXI	CGGCCG	2 cut(s)	100, 1581
Eco130I	CCWWGG	2 cut(s)	611, 1555
Eco24I	GRGCYC	3 cut(s)	1118, 1173, 1591
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	5 cut(s)	90, 410, 451, 616, 1417
Eco52I	CGGCCG	2 cut(s)	100, 1581
Eco53kI	GAGCTC	2 cut(s)	1116, 1589
Eco57I	CTGAAG	1 cut(s)	500
Eco72I	CACGTG	1 cut(s)	1135
Eco88I	CYCGRG	3 cut(s)	406, 413, 1179
EcoICRI	GAGCTC	2 cut(s)	1116, 1589
EcoO109I	RGGNCCY	3 cut(s)	241, 410, 451
EcoRII	CCWGG	2 cut(s)	797, 1101
EcoT14I	CCWWGG	2 cut(s)	611, 1555
EcoT22I	ATGCAT	1 cut(s)	1095
EcoT38I	GRGCYC	3 cut(s)	1118, 1173, 1591
EgeI	GGCGCC	1 cut(s)	886
EheI	GGCGCC	1 cut(s)	886
ErhI	CCWWGG	2 cut(s)	611, 1555
Esp3I	CGTCTC	2 cut(s)	646, 1115
FaeI	CATG	3 cut(s)	295, 313, 1354
FaiI	YATR	6 cut(s)	293, 311, 1019, 1229, 1331, 1352
FaqI	GGGAC	6 cut(s)	307, 396, 464, 745, 868, 1460
FatI	CATG	3 cut(s)	291, 309, 1350
FauI	CCCGC	1 cut(s)	272
FbaI	TGATCA	1 cut(s)	1059
FokI	GGATG	3 cut(s)	50, 1049, 1572
FriOI	GRGCYC	3 cut(s)	1118, 1173, 1591
FspBI	CTAG	2 cut(s)	503, 1610
GlaI	GCGC	6 cut(s)	10, 233, 674, 774, 886, 1177
GsuI	CTGGAG	3 cut(s)	122, 212, 1235
HaeII	RGCGCY	4 cut(s)	12, 235, 776, 888
HgaI	GACGC	5 cut(s)	309, 452, 469, 874, 1377
HhaI	GCGC	6 cut(s)	11, 234, 675, 775, 887, 1178
Hin1I	GRCGYC	3 cut(s)	480, 885, 1388
Hin1II	CATG	3 cut(s)	295, 313, 1354
Hin6I	GCGC	6 cut(s)	9, 232, 673, 773, 885, 1176
HinP1I	GCGC	6 cut(s)	9, 232, 673, 773, 885, 1176
HincII	GTYRAC	1 cut(s)	1413
HindII	GTYRAC	1 cut(s)	1413
HphI	GGTGA	7 cut(s)	73, 265, 319, 578, 769, 982, 1531
Hpy166II	GTNNAC	2 cut(s)	273, 1413
Hpy188I	TCNGA	9 cut(s)	163, 362, 421, 620, 1052, 1120, 1142, 1168, 1476
Hpy188III	TCNNGA	7 cut(s)	139, 490, 503, 524, 593, 832, 919
Hpy8I	GTNNAC	2 cut(s)	273, 1413
Hpy99I	CGWCG	9 cut(s)	152, 271, 485, 536, 557, 575, 770, 868, 1393
HpyAV	CCTTC	7 cut(s)	103, 490, 557, 599, 686, 932, 1633
HpyCH4III	ACNGT	2 cut(s)	85, 1417
HpyCH4IV	ACGT	6 cut(s)	266, 570, 897, 906, 1124, 1134
HpyCH4V	TGCA	9 cut(s)	4, 258, 295, 469, 1017, 1081, 1093, 1563, 1648
HpyF3I	CTNAG	6 cut(s)	359, 434, 713, 1112, 1261, 1590
HpySE526I	ACGT	6 cut(s)	266, 570, 897, 906, 1124, 1134
Hsp92I	GRCGYC	3 cut(s)	480, 885, 1388
Hsp92II	CATG	3 cut(s)	295, 313, 1354
HspAI	GCGC	6 cut(s)	9, 232, 673, 773, 885, 1176
KasI	GGCGCC	1 cut(s)	884
KflI	GGGWCCC	1 cut(s)	410
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	1059
Kzo9I	GATC	7 cut(s)	362, 834, 848, 915, 1059, 1098, 1483
LguI	GCTCTTC	1 cut(s)	1448
LmnI	GCTCC	8 cut(s)	291, 342, 378, 651, 972, 1143, 1586, 1631
Lsp1109I	GCAGC	2 cut(s)	121, 342
LweI	GCATC	3 cut(s)	1080, 1172, 1550
MaeI	CTAG	2 cut(s)	503, 1610
MaeII	ACGT	6 cut(s)	266, 570, 897, 906, 1124, 1134
MalI	GATC	7 cut(s)	364, 836, 850, 917, 1061, 1100, 1485
MboI	GATC	7 cut(s)	362, 834, 848, 915, 1059, 1098, 1483
MboII	GAAGA	9 cut(s)	448, 505, 539, 677, 701, 947, 1185, 1465, 1579
MfeI	CAATTG	3 cut(s)	962, 1012, 1214
MflI	RGATCY	2 cut(s)	362, 1483
MhlI	GDGCHC	5 cut(s)	375, 1118, 1140, 1173, 1591
MluCI	AATT	5 cut(s)	962, 1012, 1209, 1214, 1287
MluI	ACGCGT	1 cut(s)	461
Mly113I	GGCGCC	1 cut(s)	885
MlyI	GAGTC	7 cut(s)	158, 515, 677, 850, 1191, 1364, 1647
MmeI	TCCRAC	4 cut(s)	186, 399, 1107, 1461
Mph1103I	ATGCAT	1 cut(s)	1095
MroNI	GCCGGC	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	843
MspA1I	CMGCKG	1 cut(s)	105
MunI	CAATTG	3 cut(s)	962, 1012, 1214
MvaI	CCWGG	2 cut(s)	799, 1103
MvnI	CGCG	6 cut(s)	320, 342, 463, 673, 1074, 1577
NaeI	GCCGGC	1 cut(s)	100
NarI	GGCGCC	1 cut(s)	885
NciI	CCSGG	8 cut(s)	407, 408, 414, 415, 449, 730, 788, 853
NdeII	GATC	7 cut(s)	362, 834, 848, 915, 1059, 1098, 1483
NgoMIV	GCCGGC	1 cut(s)	98
NheI	GCTAGC	1 cut(s)	1609
NlaIII	CATG	3 cut(s)	295, 313, 1354
NlaIV	GGNNCC	8 cut(s)	411, 412, 452, 617, 886, 985, 1485, 1633
NmeAIII	GCCGAG	3 cut(s)	205, 1246, 1511
NsiI	ATGCAT	1 cut(s)	1095
NspI	RCATGY	1 cut(s)	295
NspV	TTCGAA	3 cut(s)	687, 892, 1277
PaeR7I	CTCGAG	1 cut(s)	1179
PciSI	GCTCTTC	1 cut(s)	1448
PcsI	WCGNNNNNNNCGW	6 cut(s)	480, 531, 801, 903, 1421, 1455
PdiI	GCCGGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	843
PfeI	GAWTC	7 cut(s)	430, 583, 725, 839, 1279, 1382, 1471
PfoI	TCCNGGA	4 cut(s)	447, 728, 851, 1101
PinAI	ACCGGT	1 cut(s)	1366
PleI	GAGTC	7 cut(s)	158, 514, 676, 850, 1190, 1363, 1647
PluTI	GGCGCC	1 cut(s)	888
PmaCI	CACGTG	1 cut(s)	1135
PmlI	CACGTG	1 cut(s)	1135
PpsI	GAGTC	7 cut(s)	158, 514, 676, 850, 1190, 1363, 1647
Ppu21I	YACGTR	1 cut(s)	1135
PpuMI	RGGWCCY	2 cut(s)	410, 451
PshAI	GACNNNNGTC	2 cut(s)	146, 551
Psp124BI	GAGCTC	2 cut(s)	1118, 1591
Psp5II	RGGWCCY	2 cut(s)	410, 451
Psp6I	CCWGG	2 cut(s)	797, 1101
PspCI	CACGTG	1 cut(s)	1135
PspGI	CCWGG	2 cut(s)	797, 1101
PspN4I	GGNNCC	8 cut(s)	411, 412, 452, 617, 886, 985, 1485, 1633
PspPI	GGNCC	9 cut(s)	90, 177, 241, 410, 451, 616, 704, 801, 1417
PspPPI	RGGWCCY	2 cut(s)	410, 451
PspXI	VCTCGAGB	1 cut(s)	1179
PstI	CTGCAG	1 cut(s)	1083
PsuI	RGATCY	2 cut(s)	362, 1483
Rsr2I	CGGWCCG	1 cut(s)	1417
RsrII	CGGWCCG	1 cut(s)	1417
SacI	GAGCTC	2 cut(s)	1118, 1591
SapI	GCTCTTC	1 cut(s)	1448
Sau3AI	GATC	7 cut(s)	362, 834, 848, 915, 1059, 1098, 1483
Sau96I	GGNCC	9 cut(s)	90, 177, 241, 410, 451, 616, 704, 801, 1417
SchI	GAGTC	7 cut(s)	158, 515, 677, 850, 1191, 1364, 1647
SduI	GDGCHC	5 cut(s)	375, 1118, 1140, 1173, 1591
SfaNI	GCATC	3 cut(s)	1080, 1172, 1550
SfcI	CTRYAG	1 cut(s)	1079
SfoI	GGCGCC	1 cut(s)	886
Sfr274I	CTCGAG	1 cut(s)	1179
SfuI	TTCGAA	3 cut(s)	687, 892, 1277
SgrAI	CRCCGGYG	1 cut(s)	275
SinI	GGWCC	5 cut(s)	90, 410, 451, 616, 1417
SlaI	CTCGAG	1 cut(s)	1179
SmaI	CCCGGG	2 cut(s)	408, 415
SmlI	CTYRAG	2 cut(s)	236, 1179
SmoI	CTYRAG	2 cut(s)	236, 1179
Sse9I	AATT	5 cut(s)	962, 1012, 1209, 1214, 1287
SspDI	GGCGCC	1 cut(s)	884
SspMI	CTAG	2 cut(s)	503, 1610
SstI	GAGCTC	2 cut(s)	1118, 1591
StyI	CCWWGG	2 cut(s)	611, 1555
TaaI	ACNGT	2 cut(s)	85, 1417
TaiI	ACGT	6 cut(s)	269, 573, 900, 909, 1127, 1137
TaqII	GACCGA	2 cut(s)	817, 868
TasI	AATT	5 cut(s)	962, 1012, 1209, 1214, 1287
TfiI	GAWTC	7 cut(s)	430, 583, 725, 839, 1279, 1382, 1471
TscAI	CASTG	4 cut(s)	179, 957, 985, 1506
TseI	GCWGC	2 cut(s)	109, 355
TspDTI	ATGAA	1 cut(s)	1216
TspGWI	ACGGA	1 cut(s)	136
TspMI	CCCGGG	2 cut(s)	406, 413
TspRI	CASTG	4 cut(s)	179, 957, 985, 1506
VpaK11BI	GGWCC	5 cut(s)	90, 410, 451, 616, 1417
XbaI	TCTAGA	1 cut(s)	502
XceI	RCATGY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	895
XhoI	CTCGAG	1 cut(s)	1179
XmaI	CCCGGG	2 cut(s)	406, 413
XmnI	GAANNNNTTC	1 cut(s)	843
XspI	CTAG	2 cut(s)	503, 1610
Zsp2I	ATGCAT	1 cut(s)	1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.