Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8383981.1

Orthogroup ID

OG0003535

Physical Location & Seq

Genomic Coordinates Reverse (-)

664 .. 1140

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8383981.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgcggagcgaactcgacatggtcgccgcgtccctcaccaaccaactccgcgacctagacttgctgatcagatctagcatactccagcagtcaaatgccatcgttttgtcacatccaggtttcaggtcggataaagagaatctcagcttctttatccaggacctcttcaccaggctgcaaatcggcgacatcgagttcaagaagaatgatttggagtctctgcttcagctccgcgaagactacgacaaggccgcctgctcaattttcacaaccagccttgggtccgagaacaagccacctccgccgtcttgctcctcgccgccacaaacgacgagtcgcgcaaagcggtgttatggaaagggtttaggccagttgttgagactactcggatccaggactaccacattgaaagagaaggcggcgattgccatcgaggcactcaccgtcgatgggattcaatcggagactctaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

158

Amino Acids

17.49

Weight (kDa)

7.69

Isoelectric Point (pI)

64.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05810 AT2G05810
fragaria_vesca	FvH4_1g21781 FvH4_3g23060 FvH4_6g42120
malus_domestica	MD09G1114400.v1.1 MD17G1106100.v1.1
prunus_persica	Prupe.3G210100_v2.0.a1
pyrus_communis	pycom09g03890 pycom17g09870
rosa_chinensis	RchiOBHm_Chr2g0158031
rosa_laevigata	RLG00000005113 RLG00000009946 RLG00000011412 RLG00000014991 RLG00000021051 RLG00000034476
rosa_multiflora	Rmu_co8383981.1_g000001 Rmu_sc0000419.1_g000016 Rmu_sc0004064.1_g000016 Rmu_sc0009909.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091730 Rroxscaffold_7G00168560
rosa_rugosa	Rorug02G0465300
rosa_samantha	Rh2AG531300 Rh2BG545800 Rh2CG515600 Rh2DG553900 Rh3AG074100 Rh3CG075500 Rh4AG058000 Rh4BG056800 Rh6AG401300 Rh6CG415200
rosa_wichuraiana	Rw2G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	29, 51, 234, 339
AciI	CCGC	9 cut(s)	4, 27, 49, 232, 252, 302, 320, 346, 419
AclWI	GGATC	2 cut(s)	384, 397
AcuI	CTGAAG	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	279, 450
AgsI	TTSAA	3 cut(s)	199, 409, 458
AjnI	CCWGG	4 cut(s)	115, 156, 170, 392
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	2 cut(s)	147, 229
AluI	AGCT	2 cut(s)	147, 229
Alw26I	GTCTC	3 cut(s)	222, 373, 458
AlwI	GGATC	2 cut(s)	384, 397
AoxI	GGCC	2 cut(s)	249, 367
ApeKI	GCWGC	1 cut(s)	175
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	2 cut(s)	160, 282
AsuHPI	GGTGA	3 cut(s)	28, 160, 433
AvaII	GGWCC	2 cut(s)	160, 282
BamHI	GGATCC	1 cut(s)	389
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	3 cut(s)	107, 437, 443
BceAI	ACGGC	1 cut(s)	289
BciT130I	CCWGG	4 cut(s)	117, 158, 172, 394
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	3 cut(s)	222, 373, 458
BfaI	CTAG	2 cut(s)	56, 75
BglI	GCCNNNNNGGC	1 cut(s)	434
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	5 cut(s)	27, 176, 252, 320, 420
BlsI	GCNGC	5 cut(s)	28, 177, 253, 321, 421
Bme1390I	CCNGG	4 cut(s)	117, 158, 172, 394
Bme18I	GGWCC	2 cut(s)	160, 282
BmgT120I	GGNCC	2 cut(s)	160, 282
BmiI	GGNNCC	2 cut(s)	283, 391
BmrFI	CCNGG	4 cut(s)	117, 158, 172, 394
BpiI	GAAGAC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 450
Bse1I	ACTGG	1 cut(s)	370
Bse8I	GATNNNNATC	1 cut(s)	428
BseBI	CCWGG	4 cut(s)	117, 158, 172, 394
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	428
BseLI	CCNNNNNNNGG	2 cut(s)	279, 450
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	162
Bsh1236I	CGCG	4 cut(s)	29, 51, 234, 339
BshFI	GGCC	2 cut(s)	251, 369
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	279, 450
BsmAI	GTCTC	3 cut(s)	222, 373, 458
BsmFI	GGGAC	1 cut(s)	16
BsnI	GGCC	2 cut(s)	251, 369
Bsp143I	GATC	3 cut(s)	66, 71, 389
BspACI	CCGC	9 cut(s)	4, 27, 49, 232, 252, 302, 320, 346, 419
BspANI	GGCC	2 cut(s)	251, 369
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	4 cut(s)	29, 51, 234, 339
BspLI	GGNNCC	2 cut(s)	283, 391
BspPI	GGATC	2 cut(s)	384, 397
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	3 cut(s)	66, 71, 389
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	4 cut(s)	117, 158, 172, 394
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	4 cut(s)	29, 51, 234, 339
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	3 cut(s)	69, 74, 392
BstMAI	GTCTC	3 cut(s)	222, 373, 458
BstMBI	GATC	3 cut(s)	66, 71, 389
BstMWI	GCNNNNNNNGC	3 cut(s)	301, 425, 434
BstNI	CCWGG	4 cut(s)	117, 158, 172, 394
BstSCI	CCNGG	4 cut(s)	115, 156, 170, 392
BstUI	CGCG	4 cut(s)	29, 51, 234, 339
BstV1I	GCAGC	1 cut(s)	162
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	2 cut(s)	71, 389
BstYI	RGATCY	2 cut(s)	71, 389
BsuRI	GGCC	2 cut(s)	251, 369
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	256
CfoI	GCGC	1 cut(s)	341
Cfr13I	GGNCC	2 cut(s)	160, 282
CseI	GACGC	1 cut(s)	18
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	7 cut(s)	147, 175, 229, 251, 276, 295, 369
CviKI_1	RGCY	7 cut(s)	147, 175, 229, 251, 276, 295, 369
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	3 cut(s)	68, 73, 391
DpnII	GATC	3 cut(s)	66, 71, 389
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
EciI	GGCGGA	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	160, 282
Eco57I	CTGAAG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	4 cut(s)	115, 156, 170, 392
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	1 cut(s)	22
FaiI	YATR	3 cut(s)	20, 80, 354
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	5 cut(s)	27, 176, 252, 320, 420
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	5 cut(s)	27, 176, 252, 320, 420
FspBI	CTAG	2 cut(s)	56, 75
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	5 cut(s)	27, 176, 252, 320, 420
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	251, 369
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HinfI	GANTC	5 cut(s)	139, 215, 334, 454, 466
HphI	GGTGA	3 cut(s)	28, 160, 433
Hpy188I	TCNGA	5 cut(s)	71, 130, 286, 389, 463
Hpy188III	TCNNGA	1 cut(s)	199
Hpy99I	CGWCG	2 cut(s)	334, 449
HpyAV	CCTTC	1 cut(s)	409
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4V	TGCA	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	3 cut(s)	301, 425, 434
HpyF3I	CTNAG	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	339
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	66, 71, 389
LmnI	GCTCC	3 cut(s)	6, 234, 317
Lsp1109I	GCAGC	1 cut(s)	162
MaeI	CTAG	2 cut(s)	56, 75
MaeIII	GTNAC	1 cut(s)	108
MalI	GATC	3 cut(s)	68, 73, 391
MboI	GATC	3 cut(s)	66, 71, 389
MboII	GAAGA	3 cut(s)	157, 214, 248
MflI	RGATCY	2 cut(s)	71, 389
MluCI	AATT	1 cut(s)	261
MlyI	GAGTC	3 cut(s)	224, 343, 460
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	5 cut(s)	44, 173, 309, 325, 427
MspR9I	CCNGG	4 cut(s)	117, 158, 172, 394
MvaI	CCWGG	4 cut(s)	117, 158, 172, 394
MvnI	CGCG	4 cut(s)	29, 51, 234, 339
MwoI	GCNNNNNNNGC	3 cut(s)	301, 425, 434
NdeII	GATC	3 cut(s)	66, 71, 389
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	283, 391
NmuCI	GTSAC	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	139, 454
PflFI	GACNNNGTC	1 cut(s)	20
PfoI	TCCNGGA	2 cut(s)	156, 392
PkrI	GCNGC	5 cut(s)	28, 177, 253, 321, 421
PleI	GAGTC	3 cut(s)	223, 342, 460
PpsI	GAGTC	3 cut(s)	223, 342, 460
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	4 cut(s)	115, 156, 170, 392
PspGI	CCWGG	4 cut(s)	115, 156, 170, 392
PspN4I	GGNNCC	2 cut(s)	283, 391
PspPI	GGNCC	2 cut(s)	160, 282
PspPPI	RGGWCCY	1 cut(s)	160
PsuI	RGATCY	2 cut(s)	71, 389
PsyI	GACNNNGTC	1 cut(s)	20
SatI	GCNGC	5 cut(s)	27, 176, 252, 320, 420
Sau3AI	GATC	3 cut(s)	66, 71, 389
Sau96I	GGNCC	2 cut(s)	160, 282
SchI	GAGTC	3 cut(s)	224, 343, 460
ScrFI	CCNGG	4 cut(s)	117, 158, 172, 394
SetI	ASST	7 cut(s)	57, 121, 128, 149, 165, 231, 301
SinI	GGWCC	2 cut(s)	160, 282
Sse9I	AATT	1 cut(s)	261
SsiI	CCGC	9 cut(s)	4, 27, 49, 232, 252, 302, 320, 346, 419
SspMI	CTAG	2 cut(s)	56, 75
StyD4I	CCNGG	4 cut(s)	115, 156, 170, 392
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	445
TaqI	TCGA	4 cut(s)	15, 192, 432, 447
TasI	AATT	1 cut(s)	261
TauI	GCSGC	4 cut(s)	29, 254, 322, 422
TfiI	GAWTC	2 cut(s)	139, 454
TseFI	GTSAC	1 cut(s)	108
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	108
Tth111I	GACNNNGTC	1 cut(s)	20
VpaK11BI	GGWCC	2 cut(s)	160, 282
XspI	CTAG	2 cut(s)	56, 75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.