Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003535

Physical Location & Seq

Genomic Coordinates Forward (+)

70483771 .. 70486509

Gene Structure 2739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G043940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1698 bp

ATGCAGAGCGCCACCTCCCCCCTCCAAACCCTCCTCGACCTCATCAACGAGACCCTCTCCCTCATCCTCCGCACCTCCCTCACCGTCCGGTCCTTCGCCGGCCGCTGGCAGCCCCTCCGCACCAAGCTCGCCTCCCTCCAGACCTCCGTCGCCGACATCTCCGACTCCCCCCACTGGGCTGAGAACCCCCTCCTCTACACTCTCCTCCCCAACCTCCTCTCCACTCTCCAGCGCCTCAAGGCCCTCGCCGACCAATGCAACGACACGTCGTTCACCGGCGGGAAGCTCCACATGCAGAGCGACCTCGACATGGCCGCCGCGTCCCTCACCAACCAGCTCCGCGACCTCGACCTGCTGCTCAGATCTGGCGTGCTCCACCAGTCAAACGCCATCGTTTTGTCGCACCCGGGTCCCGGGTCGGATAAAGAGAATCTCAGCTTCTTTATCCGGGACCTCTTCACGCGTCTGCAAATCGGCGGCGTCGAGTTCAAGAAGAAGGCTCTCGAGTCTCTGCTTCAGCTTCTCGAAGACGACGACAAGGCCGCGACCCTCGTCGCCAAAGAAGGAAACGTCGCCTATTTGATTCACCTTCTCGATTTCCACAACCAGCCTTGGGTCCGAGAACAGGCCGCCTCCGCCGTCTCGCTCCTCGCCGCCGCAAACGACGAGTCGCGCAAGGCGGTGTTCGAAGAAGGGGGTTTAGGCCCGTTGCTGAGACTGCTCGAATCCGGGACTACCACATTGAAAGAGAAAGCGGCAATCGCCGTCGAGGCGCTCACCGCCGACCCGGAAAACGCCTGGGCCGTTTCAGCCTACGGCGGCGTCTCGGTCTTGATCGAATCCATTCGATCCGGGACTCCGGCGACGCAGACCCACTCGGTCGGCGCCATTAGAAACGTGGCTGACGTGGAGGAGATCAAGGCGGCTTTAGGAGAAGAAGGGGCTGTGCCAGTGCTACTCCAATTGCTCCTCTCCGGCACCATCACCGCCCAAGAGAAATCGGCCAATTGCATAGCGATTTTAGCCTCAACCGATGAGTATTTCCGAGCTTTGATCATCCAAGAACGCGGCCTGCAGAGATTGATGCATTTGATCCAGGACTTACTGAGCTCGGAGACGTTGGAACACGTGCTCCGAGCCATCGCTTCGCTTTCGGCATCAGAGCCCTGCGCTCGAGTCCTGTCATCTTCAACCTTGTTCCTAATTCAATTGGCCGAGTTCATAAAGCAGGGTAACTCAATCCTCCAGCAAATCTCAGTTTCTTTGCTTTCGAATCTATCAATTAGTATCAGCGATGGGAATAAGCGAGCCATCAGTAGCTGTATGGGGTCATTGGTCAAGCTCATGGAGTCGCCAAAACCGGTGGGGCTACAAGAATCGGCGTCGCAAGCTCTTGTTTCGCTGTTGACGGTCCGGTCGAACCGGAAAGAGTTGGTTAGGGACGAGAAGAGCGTGATGAGGCTGATTCAGATGTTGGATCCCAGAAACGAAGCAGTGAGCCACAAGTTTCCGGTGATGCTAATCTCGGCGATACTCGCCGGAGGAAGCCAGGGATGCAGGAAGAGGCTCGCGGTGGCCGGAGCTCAGCCACATTTACAGAAGCTAGCGGAGATGGAGGTCGCCGGAGCCAAGAAGGCGCTGCAGAGACTCTCCGGCAATAGGCTAAAGACCATTTTCTCCCTGACTTGGAGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

565

Amino Acids

61.19

Weight (kDa)

6.63

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7032	PF23005	16 - 124	2e-33	Domain of unknown function (DUF7032)
ARM_ARMC5	PF24768	178 - 382	9.3e-13	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05810 AT2G05810
fragaria_vesca	FvH4_1g21781 FvH4_3g23060 FvH4_6g42120
malus_domestica	MD09G1114400.v1.1 MD17G1106100.v1.1
prunus_persica	Prupe.3G210100_v2.0.a1
pyrus_communis	pycom09g03890 pycom17g09870
rosa_chinensis	RchiOBHm_Chr2g0158031
rosa_laevigata	RLG00000005113 RLG00000009946 RLG00000011412 RLG00000014991 RLG00000021051 RLG00000034476
rosa_multiflora	Rmu_co8383981.1_g000001 Rmu_sc0000419.1_g000016 Rmu_sc0004064.1_g000016 Rmu_sc0009909.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091730 Rroxscaffold_7G00168560
rosa_rugosa	Rorug02G0465300
rosa_samantha	Rh2AG531300 Rh2BG545800 Rh2CG515600 Rh2DG553900 Rh3AG074100 Rh3CG075500 Rh4AG058000 Rh4BG056800 Rh6AG401300 Rh6CG415200
rosa_wichuraiana	Rw2G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1414
Acc36I	ACCTGC	1 cut(s)	360
AccB1I	GGYRCC	2 cut(s)	884, 977
AccII	CGCG	7 cut(s)	320, 342, 463, 545, 673, 1068, 1571
AclWI	GGATC	4 cut(s)	843, 1087, 1472, 1485
AcoI	YGGCCR	5 cut(s)	100, 312, 1002, 1212, 1575
AcuI	CTGAAG	1 cut(s)	500
AcvI	CACGTG	1 cut(s)	1129
AcyI	GRCGYC	4 cut(s)	480, 822, 885, 1382
AfiI	CCNNNNNNNGG	9 cut(s)	105, 174, 175, 310, 413, 613, 625, 1659, 1686
AflIII	ACRYGT	3 cut(s)	264, 461, 1126
AgeI	ACCGGT	1 cut(s)	1360
AgsI	TTSAA	4 cut(s)	490, 745, 1191, 1208
AjiI	CACGTC	2 cut(s)	267, 907
AjnI	CCWGG	3 cut(s)	797, 1095, 1548
AloI	GAACNNNNNNTCC	2 cut(s)	1116, 1148
Alw21I	GWGCWC	4 cut(s)	375, 1112, 1134, 1585
Alw26I	GTCTC	7 cut(s)	44, 513, 646, 709, 829, 1109, 1639
AlwI	GGATC	4 cut(s)	843, 1087, 1472, 1485
AlwNI	CAGNNNCTG	1 cut(s)	1320
Ama87I	CYCGRG	4 cut(s)	406, 413, 503, 1173
ApeKI	GCWGC	3 cut(s)	109, 355, 1639
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
AsiGI	ACCGGT	1 cut(s)	1360
Asp700I	GAANNNNTTC	1 cut(s)	843
AspLEI	GCGC	7 cut(s)	11, 234, 675, 775, 887, 1172, 1639
AspS9I	GGNCC	8 cut(s)	90, 241, 410, 451, 616, 704, 801, 1411
AsuC2I	CCSGG	8 cut(s)	407, 408, 414, 415, 449, 730, 788, 853
AsuHPI	GGTGA	7 cut(s)	73, 265, 319, 578, 769, 976, 1525
AsuII	TTCGAA	2 cut(s)	687, 1271
AsuNHI	GCTAGC	1 cut(s)	1603
AvaI	CYCGRG	4 cut(s)	406, 413, 503, 1173
AvaII	GGWCC	5 cut(s)	90, 410, 451, 616, 1411
BamHI	GGATCC	1 cut(s)	1477
BanI	GGYRCC	2 cut(s)	884, 977
BanII	GRGCYC	3 cut(s)	1112, 1167, 1585
BbrPI	CACGTG	1 cut(s)	1129
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	4 cut(s)	375, 1112, 1134, 1585
BbvI	GCAGC	3 cut(s)	121, 342, 1626
BccI	CCATC	6 cut(s)	398, 989, 1148, 1289, 1319, 1606
BceAI	ACGGC	4 cut(s)	623, 749, 788, 832
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	3 cut(s)	799, 1097, 1550
BclI	TGATCA	1 cut(s)	1053
BcnI	CCSGG	8 cut(s)	407, 408, 414, 415, 449, 730, 788, 853
BcoDI	GTCTC	7 cut(s)	44, 513, 646, 709, 829, 1109, 1639
BfaI	CTAG	1 cut(s)	1604
BfmI	CTRYAG	2 cut(s)	1073, 1640
BfoI	RGCGCY	5 cut(s)	12, 235, 776, 888, 1640
BfuAI	ACCTGC	1 cut(s)	360
BglI	GCCNNNNNGGC	2 cut(s)	770, 1634
BglII	AGATCT	1 cut(s)	362
BlpI	GCTNAGC	1 cut(s)	1584
Bme18I	GGWCC	5 cut(s)	90, 410, 451, 616, 1411
BmeT110I	CYCGRG	4 cut(s)	406, 413, 503, 1173
BmgBI	CACGTC	2 cut(s)	267, 907
BmgT120I	GGNCC	8 cut(s)	90, 241, 410, 451, 616, 704, 801, 1411
BmiI	GGNNCC	8 cut(s)	411, 412, 452, 617, 886, 979, 1479, 1627
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	4 cut(s)	1074, 1166, 1506, 1544
BmtI	GCTAGC	1 cut(s)	1607
BmuI	ACTGGG	1 cut(s)	184
BoxI	GACNNNNGTC	2 cut(s)	146, 551
BpiI	GAAGAC	1 cut(s)	534
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpmI	CTGGAG	3 cut(s)	122, 212, 1229
Bpu1102I	GCTNAGC	1 cut(s)	1584
Bpu14I	TTCGAA	2 cut(s)	687, 1271
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	8 cut(s)	407, 408, 414, 415, 449, 730, 788, 853
BsaAI	YACGTR	1 cut(s)	1129
BsaBI	GATNNNNATC	1 cut(s)	1520
BsaHI	GRCGYC	4 cut(s)	480, 822, 885, 1382
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	5 cut(s)	406, 413, 611, 798, 1549
BsaWI	WCCGGW	5 cut(s)	87, 1360, 1413, 1422, 1510
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 1116, 1146
Bsc4I	CCNNNNNNNGG	9 cut(s)	105, 174, 175, 310, 413, 613, 625, 1659, 1686
Bse118I	RCCGGY	3 cut(s)	98, 275, 1360
Bse1I	ACTGG	3 cut(s)	179, 379, 950
Bse8I	GATNNNNATC	1 cut(s)	1520
BseBI	CCWGG	3 cut(s)	799, 1097, 1550
BseDI	CCNNGG	5 cut(s)	406, 413, 611, 798, 1549
BseGI	GGATG	3 cut(s)	63, 1056, 1559
BseJI	GATNNNNATC	1 cut(s)	1520
BseLI	CCNNNNNNNGG	9 cut(s)	105, 174, 175, 310, 413, 613, 625, 1659, 1686
BseMII	CTCAG	7 cut(s)	171, 373, 448, 704, 1097, 1269, 1598
BseNI	ACTGG	3 cut(s)	179, 379, 950
BseRI	GAGGAG	7 cut(s)	23, 182, 194, 206, 638, 926, 959
BseX3I	CGGCCG	1 cut(s)	100
BseXI	GCAGC	3 cut(s)	121, 342, 1626
Bsh1236I	CGCG	7 cut(s)	320, 342, 463, 545, 673, 1068, 1571
Bsh1285I	CGRYCG	3 cut(s)	103, 882, 1418
BshNI	GGYRCC	2 cut(s)	884, 977
BshTI	ACCGGT	1 cut(s)	1360
BsiEI	CGRYCG	3 cut(s)	103, 882, 1418
BsiHKAI	GWGCWC	4 cut(s)	375, 1112, 1134, 1585
BsiHKCI	CYCGRG	4 cut(s)	406, 413, 503, 1173
BslFI	GGGAC	6 cut(s)	307, 396, 464, 745, 868, 1454
BslI	CCNNNNNNNGG	9 cut(s)	105, 174, 175, 310, 413, 613, 625, 1659, 1686
BsmAI	GTCTC	7 cut(s)	44, 513, 646, 709, 829, 1109, 1639
BsmBI	CGTCTC	3 cut(s)	646, 829, 1109
BsmFI	GGGAC	6 cut(s)	307, 396, 464, 745, 868, 1454
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	4 cut(s)	406, 413, 503, 1173
Bsp119I	TTCGAA	2 cut(s)	687, 1271
Bsp1286I	GDGCHC	5 cut(s)	375, 1112, 1134, 1167, 1585
Bsp143I	GATC	7 cut(s)	362, 834, 848, 915, 1053, 1092, 1477
Bsp1720I	GCTNAGC	1 cut(s)	1584
BspCNI	CTCAG	7 cut(s)	172, 372, 447, 705, 1098, 1268, 1597
BspFNI	CGCG	7 cut(s)	320, 342, 463, 545, 673, 1068, 1571
BspLI	GGNNCC	8 cut(s)	411, 412, 452, 617, 886, 979, 1479, 1627
BspMAI	CTGCAG	2 cut(s)	1077, 1644
BspMI	ACCTGC	1 cut(s)	360
BspOI	GCTAGC	1 cut(s)	1607
BspPI	GGATC	4 cut(s)	843, 1087, 1472, 1485
BspQI	GCTCTTC	1 cut(s)	1442
BspT104I	TTCGAA	2 cut(s)	687, 1271
BspT107I	GGYRCC	2 cut(s)	884, 977
BspTNI	GGTCTC	1 cut(s)	44
BsrFI	RCCGGY	3 cut(s)	98, 275, 1360
BsrI	ACTGG	3 cut(s)	179, 379, 950
BssAI	RCCGGY	3 cut(s)	98, 275, 1360
BssECI	CCNNGG	5 cut(s)	406, 413, 611, 798, 1549
BssMI	GATC	7 cut(s)	362, 834, 848, 915, 1053, 1092, 1477
BssNI	GRCGYC	4 cut(s)	480, 822, 885, 1382
BssT1I	CCWWGG	1 cut(s)	611
Bst2UI	CCWGG	3 cut(s)	799, 1097, 1550
Bst4CI	ACNGT	2 cut(s)	85, 1411
Bst6I	CTCTTC	3 cut(s)	461, 1442, 1556
BstACI	GRCGYC	4 cut(s)	480, 822, 885, 1382
BstBAI	YACGTR	1 cut(s)	1129
BstBI	TTCGAA	2 cut(s)	687, 1271
BstC8I	GCNNGC	9 cut(s)	100, 107, 129, 371, 1073, 1308, 1389, 1569, 1605
BstDEI	CTNAG	7 cut(s)	180, 359, 434, 713, 1106, 1255, 1584
BstF5I	GGATG	3 cut(s)	63, 1056, 1559
BstFNI	CGCG	7 cut(s)	320, 342, 463, 545, 673, 1068, 1571
BstH2I	RGCGCY	5 cut(s)	12, 235, 776, 888, 1640
BstHHI	GCGC	7 cut(s)	11, 234, 675, 775, 887, 1172, 1639
BstKTI	GATC	7 cut(s)	365, 837, 851, 918, 1056, 1095, 1480
BstMAI	GTCTC	7 cut(s)	44, 513, 646, 709, 829, 1109, 1639
BstMBI	GATC	7 cut(s)	362, 834, 848, 915, 1053, 1092, 1477
BstMCI	CGRYCG	3 cut(s)	103, 882, 1418
BstNI	CCWGG	3 cut(s)	799, 1097, 1550
BstNSI	RCATGY	1 cut(s)	295
BstPAI	GACNNNNGTC	2 cut(s)	146, 551
BstSFI	CTRYAG	2 cut(s)	1073, 1640
BstUI	CGCG	7 cut(s)	320, 342, 463, 545, 673, 1068, 1571
BstV1I	GCAGC	3 cut(s)	121, 342, 1626
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	2 cut(s)	362, 1477
BstYI	RGATCY	2 cut(s)	362, 1477
BstZI	CGGCCG	1 cut(s)	100
BtgZI	GCGATG	2 cut(s)	1126, 1308
BtrI	CACGTC	2 cut(s)	267, 907
BtsCI	GGATG	3 cut(s)	63, 1056, 1559
BtsI	GCAGTG	1 cut(s)	1500
BtsIMutI	CAGTG	3 cut(s)	172, 957, 1500
BveI	ACCTGC	1 cut(s)	360
Cac8I	GCNNGC	9 cut(s)	100, 107, 129, 371, 1073, 1308, 1389, 1569, 1605
CaiI	CAGNNNCTG	1 cut(s)	1320
CfoI	GCGC	7 cut(s)	11, 234, 675, 775, 887, 1172, 1639
Cfr10I	RCCGGY	3 cut(s)	98, 275, 1360
Cfr13I	GGNCC	8 cut(s)	90, 241, 410, 451, 616, 704, 801, 1411
Cfr9I	CCCGGG	2 cut(s)	406, 413
CpoI	CGGWCCG	1 cut(s)	1411
CseI	GACGC	6 cut(s)	309, 452, 469, 811, 874, 1371
CspAI	ACCGGT	1 cut(s)	1360
CspCI	CAANNNNNGTGG	2 cut(s)	1344, 1379
CspI	CGGWCCG	1 cut(s)	1411
CviAII	CATG	3 cut(s)	292, 310, 1345
DdeI	CTNAG	7 cut(s)	180, 359, 434, 713, 1106, 1255, 1584
DinI	GGCGCC	1 cut(s)	886
DpnI	GATC	7 cut(s)	364, 836, 850, 917, 1055, 1094, 1479
DpnII	GATC	7 cut(s)	362, 834, 848, 915, 1053, 1092, 1477
DrdI	GACNNNNNNGTC	1 cut(s)	1414
DseDI	GACNNNNNNGTC	1 cut(s)	1414
EaeI	YGGCCR	5 cut(s)	100, 312, 1002, 1212, 1575
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	3 cut(s)	461, 1442, 1556
EarI	CTCTTC	3 cut(s)	461, 1442, 1556
EciI	GGCGGA	1 cut(s)	625
Ecl136II	GAGCTC	2 cut(s)	1110, 1583
EclXI	CGGCCG	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	611
Eco24I	GRGCYC	3 cut(s)	1112, 1167, 1585
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	5 cut(s)	90, 410, 451, 616, 1411
Eco52I	CGGCCG	1 cut(s)	100
Eco53kI	GAGCTC	2 cut(s)	1110, 1583
Eco57I	CTGAAG	1 cut(s)	500
Eco72I	CACGTG	1 cut(s)	1129
Eco88I	CYCGRG	4 cut(s)	406, 413, 503, 1173
EcoICRI	GAGCTC	2 cut(s)	1110, 1583
EcoO109I	RGGNCCY	3 cut(s)	241, 410, 451
EcoRII	CCWGG	3 cut(s)	797, 1095, 1548
EcoT14I	CCWWGG	1 cut(s)	611
EcoT22I	ATGCAT	1 cut(s)	1089
EcoT38I	GRGCYC	3 cut(s)	1112, 1167, 1585
EgeI	GGCGCC	1 cut(s)	886
EheI	GGCGCC	1 cut(s)	886
ErhI	CCWWGG	1 cut(s)	611
Esp3I	CGTCTC	3 cut(s)	646, 829, 1109
FaeI	CATG	3 cut(s)	295, 313, 1348
FaiI	YATR	6 cut(s)	293, 311, 1013, 1223, 1325, 1346
FaqI	GGGAC	6 cut(s)	307, 396, 464, 745, 868, 1454
FatI	CATG	3 cut(s)	291, 309, 1344
FauI	CCCGC	1 cut(s)	272
FbaI	TGATCA	1 cut(s)	1053
FokI	GGATG	3 cut(s)	50, 1043, 1566
FriOI	GRGCYC	3 cut(s)	1112, 1167, 1585
FspBI	CTAG	1 cut(s)	1604
GlaI	GCGC	7 cut(s)	10, 233, 674, 774, 886, 1171, 1638
GsuI	CTGGAG	3 cut(s)	122, 212, 1229
HaeII	RGCGCY	5 cut(s)	12, 235, 776, 888, 1640
HgaI	GACGC	6 cut(s)	309, 452, 469, 811, 874, 1371
HhaI	GCGC	7 cut(s)	11, 234, 675, 775, 887, 1172, 1639
Hin1I	GRCGYC	4 cut(s)	480, 822, 885, 1382
Hin1II	CATG	3 cut(s)	295, 313, 1348
Hin6I	GCGC	7 cut(s)	9, 232, 673, 773, 885, 1170, 1637
HinP1I	GCGC	7 cut(s)	9, 232, 673, 773, 885, 1170, 1637
HincII	GTYRAC	1 cut(s)	1407
HindII	GTYRAC	1 cut(s)	1407
HphI	GGTGA	7 cut(s)	73, 265, 319, 578, 769, 976, 1525
Hpy166II	GTNNAC	2 cut(s)	273, 1407
Hpy188I	TCNGA	9 cut(s)	163, 362, 421, 620, 1046, 1114, 1136, 1162, 1470
Hpy188III	TCNNGA	6 cut(s)	139, 490, 503, 524, 593, 832
Hpy8I	GTNNAC	2 cut(s)	273, 1407
HpyAV	CCTTC	7 cut(s)	103, 490, 557, 599, 686, 932, 1627
HpyCH4III	ACNGT	2 cut(s)	85, 1411
HpyCH4IV	ACGT	6 cut(s)	266, 570, 897, 906, 1118, 1128
HpyCH4V	TGCA	9 cut(s)	4, 258, 295, 469, 1011, 1075, 1087, 1557, 1642
HpyF3I	CTNAG	7 cut(s)	180, 359, 434, 713, 1106, 1255, 1584
HpySE526I	ACGT	6 cut(s)	266, 570, 897, 906, 1118, 1128
Hsp92I	GRCGYC	4 cut(s)	480, 822, 885, 1382
Hsp92II	CATG	3 cut(s)	295, 313, 1348
HspAI	GCGC	7 cut(s)	9, 232, 673, 773, 885, 1170, 1637
KasI	GGCGCC	1 cut(s)	884
KflI	GGGWCCC	1 cut(s)	410
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	1053
Kzo9I	GATC	7 cut(s)	362, 834, 848, 915, 1053, 1092, 1477
LguI	GCTCTTC	1 cut(s)	1442
LmnI	GCTCC	8 cut(s)	291, 342, 378, 651, 972, 1137, 1580, 1625
Lsp1109I	GCAGC	3 cut(s)	121, 342, 1626
LweI	GCATC	4 cut(s)	1074, 1166, 1506, 1544
MaeI	CTAG	1 cut(s)	1604
MaeII	ACGT	6 cut(s)	266, 570, 897, 906, 1118, 1128
MaeIII	GTNAC	1 cut(s)	1232
MalI	GATC	7 cut(s)	364, 836, 850, 917, 1055, 1094, 1479
MboI	GATC	7 cut(s)	362, 834, 848, 915, 1053, 1092, 1477
MboII	GAAGA	8 cut(s)	448, 505, 539, 701, 947, 1179, 1459, 1573
MfeI	CAATTG	3 cut(s)	962, 1006, 1208
MflI	RGATCY	2 cut(s)	362, 1477
MhlI	GDGCHC	5 cut(s)	375, 1112, 1134, 1167, 1585
MluCI	AATT	5 cut(s)	962, 1006, 1203, 1208, 1281
MluI	ACGCGT	1 cut(s)	461
Mly113I	GGCGCC	1 cut(s)	885
MlyI	GAGTC	7 cut(s)	158, 515, 677, 850, 1185, 1358, 1641
MmeI	TCCRAC	4 cut(s)	186, 399, 1101, 1455
Mph1103I	ATGCAT	1 cut(s)	1089
MroNI	GCCGGC	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	843
MspA1I	CMGCKG	1 cut(s)	105
MunI	CAATTG	3 cut(s)	962, 1006, 1208
MvaI	CCWGG	3 cut(s)	799, 1097, 1550
MvnI	CGCG	7 cut(s)	320, 342, 463, 545, 673, 1068, 1571
NaeI	GCCGGC	1 cut(s)	100
NarI	GGCGCC	1 cut(s)	885
NciI	CCSGG	8 cut(s)	407, 408, 414, 415, 449, 730, 788, 853
NdeII	GATC	7 cut(s)	362, 834, 848, 915, 1053, 1092, 1477
NgoMIV	GCCGGC	1 cut(s)	98
NheI	GCTAGC	1 cut(s)	1603
NlaIII	CATG	3 cut(s)	295, 313, 1348
NlaIV	GGNNCC	8 cut(s)	411, 412, 452, 617, 886, 979, 1479, 1627
NmeAIII	GCCGAG	2 cut(s)	1240, 1505
NsiI	ATGCAT	1 cut(s)	1089
NspI	RCATGY	1 cut(s)	295
NspV	TTCGAA	2 cut(s)	687, 1271
PaeR7I	CTCGAG	2 cut(s)	503, 1173
PciSI	GCTCTTC	1 cut(s)	1442
PcsI	WCGNNNNNNNCGW	6 cut(s)	480, 531, 801, 903, 1415, 1449
PdiI	GCCGGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	843
PfeI	GAWTC	7 cut(s)	430, 583, 725, 839, 1273, 1376, 1465
PfoI	TCCNGGA	4 cut(s)	447, 728, 851, 1095
PinAI	ACCGGT	1 cut(s)	1360
PleI	GAGTC	7 cut(s)	158, 514, 676, 850, 1184, 1357, 1641
PluTI	GGCGCC	1 cut(s)	888
PmaCI	CACGTG	1 cut(s)	1129
PmlI	CACGTG	1 cut(s)	1129
PpsI	GAGTC	7 cut(s)	158, 514, 676, 850, 1184, 1357, 1641
Ppu21I	YACGTR	1 cut(s)	1129
PpuMI	RGGWCCY	2 cut(s)	410, 451
PshAI	GACNNNNGTC	2 cut(s)	146, 551
Psp124BI	GAGCTC	2 cut(s)	1112, 1585
Psp5II	RGGWCCY	2 cut(s)	410, 451
Psp6I	CCWGG	3 cut(s)	797, 1095, 1548
PspCI	CACGTG	1 cut(s)	1129
PspGI	CCWGG	3 cut(s)	797, 1095, 1548
PspN4I	GGNNCC	8 cut(s)	411, 412, 452, 617, 886, 979, 1479, 1627
PspPI	GGNCC	8 cut(s)	90, 241, 410, 451, 616, 704, 801, 1411
PspPPI	RGGWCCY	2 cut(s)	410, 451
PspXI	VCTCGAGB	1 cut(s)	1173
PstI	CTGCAG	2 cut(s)	1077, 1644
PstNI	CAGNNNCTG	1 cut(s)	1320
PsuI	RGATCY	2 cut(s)	362, 1477
Rsr2I	CGGWCCG	1 cut(s)	1411
RsrII	CGGWCCG	1 cut(s)	1411
SacI	GAGCTC	2 cut(s)	1112, 1585
SapI	GCTCTTC	1 cut(s)	1442
Sau3AI	GATC	7 cut(s)	362, 834, 848, 915, 1053, 1092, 1477
Sau96I	GGNCC	8 cut(s)	90, 241, 410, 451, 616, 704, 801, 1411
SchI	GAGTC	7 cut(s)	158, 515, 677, 850, 1185, 1358, 1641
SduI	GDGCHC	5 cut(s)	375, 1112, 1134, 1167, 1585
SfaNI	GCATC	4 cut(s)	1074, 1166, 1506, 1544
SfcI	CTRYAG	2 cut(s)	1073, 1640
SfoI	GGCGCC	1 cut(s)	886
Sfr274I	CTCGAG	2 cut(s)	503, 1173
SfuI	TTCGAA	2 cut(s)	687, 1271
SgrAI	CRCCGGYG	1 cut(s)	275
SinI	GGWCC	5 cut(s)	90, 410, 451, 616, 1411
SlaI	CTCGAG	2 cut(s)	503, 1173
SmaI	CCCGGG	2 cut(s)	408, 415
SmlI	CTYRAG	3 cut(s)	236, 503, 1173
SmoI	CTYRAG	3 cut(s)	236, 503, 1173
Sse9I	AATT	5 cut(s)	962, 1006, 1203, 1208, 1281
SspDI	GGCGCC	1 cut(s)	884
SspMI	CTAG	1 cut(s)	1604
SstI	GAGCTC	2 cut(s)	1112, 1585
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	2 cut(s)	85, 1411
TaiI	ACGT	6 cut(s)	269, 573, 900, 909, 1121, 1131
TaqII	GACCGA	2 cut(s)	817, 868
TasI	AATT	5 cut(s)	962, 1006, 1203, 1208, 1281
TfiI	GAWTC	7 cut(s)	430, 583, 725, 839, 1273, 1376, 1465
TscAI	CASTG	3 cut(s)	179, 957, 1500
TseI	GCWGC	3 cut(s)	109, 355, 1639
TspDTI	ATGAA	1 cut(s)	1210
TspGWI	ACGGA	1 cut(s)	136
TspMI	CCCGGG	2 cut(s)	406, 413
TspRI	CASTG	3 cut(s)	179, 957, 1500
VpaK11BI	GGWCC	5 cut(s)	90, 410, 451, 616, 1411
XceI	RCATGY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	895
XhoI	CTCGAG	2 cut(s)	503, 1173
XmaI	CCCGGG	2 cut(s)	406, 413
XmnI	GAANNNNTTC	1 cut(s)	843
XspI	CTAG	1 cut(s)	1604
Zsp2I	ATGCAT	1 cut(s)	1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.