Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003535

Physical Location & Seq

Genomic Coordinates Reverse (-)

10168368 .. 10169399

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG056800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGTGCTCCACTAGTCAAGCGCCATCATTTTGTTGCATCCAGTTTCCGGGTCCGATAAAGAGAATCTTAGCTTCTTTATCCGGGACCTCTTCACCCGGCGACATCAAGTTCAAGAAGAAGGCACTGGAGTCTCTGCTTCAGCTCTGCGAAGACTACGACAAGACCGCCTGCTTGATTTCCACAACCAGCCTTGGATCCGAGAACAAGCCACCTCCTACTTCTCATTCCTCGCCGCTGCAAATGATGAGTCGAGCAAGGCGGTGTTCGAGGAAAGGGTATAGGCCCATTGTTGAGACAACTCGAATCCGGGATTACCACATTGAAAGAGAAGGCGGCGATTGCAATCGAGGCACTCAATGTCGATGGAATTTAATCGAAGACTCTAAAATGAATCCCTCGTTGTCTTCTTTTCCATCTTCTACTTCTTCAGCTTTCGCCGGTTCCAGGTTCTCCAGCGTTGTCCGGGGCCGATTCGACTATGTTGGGTCAGTCAAGATGGGCTTCGACTTTGCTTCTGGTGGTGACTTTTCTGGCCCCTTCGTGCGGAAGAATCAGTTTCGAGGGGCACTCTTCAAGTATGGCCCTAAACTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1749

Protein Analysis

199

Amino Acids

21.9

Weight (kDa)

9.64

Isoelectric Point (pI)

62.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05810 AT2G05810
fragaria_vesca	FvH4_1g21781 FvH4_3g23060 FvH4_6g42120
malus_domestica	MD09G1114400.v1.1 MD17G1106100.v1.1
prunus_persica	Prupe.3G210100_v2.0.a1
pyrus_communis	pycom09g03890 pycom17g09870
rosa_chinensis	RchiOBHm_Chr2g0158031
rosa_laevigata	RLG00000005113 RLG00000009946 RLG00000011412 RLG00000014991 RLG00000021051 RLG00000034476
rosa_multiflora	Rmu_co8383981.1_g000001 Rmu_sc0000419.1_g000016 Rmu_sc0004064.1_g000016 Rmu_sc0009909.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091730 Rroxscaffold_7G00168560
rosa_rugosa	Rorug02G0465300
rosa_samantha	Rh2AG531300 Rh2BG545800 Rh2CG515600 Rh2DG553900 Rh3AG074100 Rh3CG075500 Rh4AG058000 Rh4BG056800 Rh6AG401300 Rh6CG415200
rosa_wichuraiana	Rw2G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	168, 236, 262, 336, 547
AclWI	GGATC	2 cut(s)	192, 205
AcsI	RAATTY	1 cut(s)	370
AcuI	CTGAAG	2 cut(s)	125, 414
AfiI	CCNNNNNNNGG	3 cut(s)	49, 447, 546
AgsI	TTSAA	3 cut(s)	115, 326, 577
AhlI	ACTAGT	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	446
AluBI	AGCT	3 cut(s)	74, 145, 434
AluI	AGCT	3 cut(s)	74, 145, 434
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	138, 290
AlwI	GGATC	2 cut(s)	192, 205
AoxI	GGCC	4 cut(s)	284, 469, 535, 583
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	370
ArsI	GACNNNNNNTTYG	2 cut(s)	235, 267
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	6 cut(s)	53, 87, 285, 469, 536, 584
AsuC2I	CCSGG	5 cut(s)	51, 85, 99, 311, 467
AsuHPI	GGTGA	2 cut(s)	87, 536
AvaII	GGWCC	2 cut(s)	53, 87
BaeGI	GKGCMC	1 cut(s)	571
BamHI	GGATCC	1 cut(s)	197
BbsI	GAAGAC	3 cut(s)	159, 387, 399
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	4 cut(s)	34, 360, 424, 493
BciT130I	CCWGG	1 cut(s)	448
BcnI	CCSGG	5 cut(s)	51, 85, 99, 311, 467
BcoDI	GTCTC	2 cut(s)	138, 290
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	3 cut(s)	236, 239, 337
BlsI	GCNGC	3 cut(s)	237, 240, 338
Bme1390I	CCNGG	6 cut(s)	51, 85, 99, 311, 448, 467
Bme18I	GGWCC	2 cut(s)	53, 87
BmgT120I	GGNCC	6 cut(s)	53, 87, 285, 469, 536, 584
BmiI	GGNNCC	6 cut(s)	54, 88, 199, 445, 470, 538
BmrFI	CCNGG	6 cut(s)	51, 85, 99, 311, 448, 467
BmsI	GCATC	1 cut(s)	48
BpiI	GAAGAC	3 cut(s)	159, 387, 399
BplI	GAGNNNNNCTC	2 cut(s)	555, 587
BpmI	CTGGAG	2 cut(s)	149, 439
BpuMI	CCSGG	5 cut(s)	51, 85, 99, 311, 467
BsaBI	GATNNNNATC	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	193, 466
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 447, 546
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	2 cut(s)	43, 132
Bse8I	GATNNNNATC	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	2 cut(s)	193, 466
BseGI	GGATG	1 cut(s)	39
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	3 cut(s)	49, 447, 546
BseNI	ACTGG	2 cut(s)	43, 132
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	4 cut(s)	286, 471, 537, 585
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	6 cut(s)	50, 84, 99, 310, 441, 466
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	3 cut(s)	49, 447, 546
BsmAI	GTCTC	2 cut(s)	138, 290
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	4 cut(s)	286, 471, 537, 585
Bsp1286I	GDGCHC	2 cut(s)	11, 571
Bsp143I	GATC	1 cut(s)	197
BspACI	CCGC	5 cut(s)	168, 236, 262, 336, 547
BspANI	GGCC	4 cut(s)	286, 471, 537, 585
BspLI	GGNNCC	6 cut(s)	54, 88, 199, 445, 470, 538
BspPI	GGATC	2 cut(s)	192, 205
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	2 cut(s)	43, 132
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	2 cut(s)	193, 466
BssMI	GATC	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	448
Bst6I	CTCTTC	2 cut(s)	97, 578
BstC8I	GCNNGC	2 cut(s)	7, 172
BstDEI	CTNAG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	39
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	1 cut(s)	200
BstMAI	GTCTC	2 cut(s)	138, 290
BstMBI	GATC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	2 cut(s)	342, 351
BstNI	CCWGG	1 cut(s)	448
BstSCI	CCNGG	6 cut(s)	49, 83, 97, 309, 446, 465
BstSLI	GKGCMC	1 cut(s)	571
BstV1I	GCAGC	1 cut(s)	225
BstV2I	GAAGAC	3 cut(s)	159, 387, 399
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BsuRI	GGCC	4 cut(s)	286, 471, 537, 585
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	2 cut(s)	7, 172
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	6 cut(s)	53, 87, 285, 469, 536, 584
DdeI	CTNAG	1 cut(s)	70
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
Eam1104I	CTCTTC	2 cut(s)	97, 578
EarI	CTCTTC	2 cut(s)	97, 578
Eco130I	CCWWGG	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	53, 87
Eco57I	CTGAAG	2 cut(s)	125, 414
EcoO109I	RGGNCCY	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaiI	YATR	3 cut(s)	282, 483, 582
FalI	AAGNNNNNCTT	4 cut(s)	53, 85, 488, 520
FaqI	GGGAC	1 cut(s)	100
Fnu4HI	GCNGC	3 cut(s)	236, 239, 337
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	3 cut(s)	236, 239, 337
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	3 cut(s)	236, 239, 337
GsuI	CTGGAG	2 cut(s)	149, 439
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	4 cut(s)	286, 471, 537, 585
HapII	CCGG	6 cut(s)	50, 84, 99, 310, 441, 466
HhaI	GCGC	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	8 cut(s)	66, 131, 250, 306, 383, 394, 474, 553
HpaII	CCGG	6 cut(s)	50, 84, 99, 310, 441, 466
HphI	GGTGA	2 cut(s)	87, 536
Hpy188I	TCNGA	2 cut(s)	57, 202
Hpy188III	TCNNGA	2 cut(s)	115, 496
HpyAV	CCTTC	3 cut(s)	115, 326, 550
HpyCH4V	TGCA	3 cut(s)	39, 241, 345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	342, 351
HpyF3I	CTNAG	1 cut(s)	70
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	197
LmnI	GCTCC	1 cut(s)	14
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	524
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MboII	GAAGA	9 cut(s)	84, 130, 164, 392, 399, 411, 420, 562, 565
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	2 cut(s)	11, 571
MluCI	AATT	2 cut(s)	370, 594
MlyI	GAGTC	3 cut(s)	140, 259, 377
MnlI	CCTC	7 cut(s)	100, 225, 241, 264, 344, 409, 557
MseI	TTAA	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	6 cut(s)	50, 84, 99, 310, 441, 466
MspR9I	CCNGG	6 cut(s)	51, 85, 99, 311, 448, 467
MvaI	CCWGG	1 cut(s)	448
MwoI	GCNNNNNNNGC	2 cut(s)	342, 351
NciI	CCSGG	5 cut(s)	51, 85, 99, 311, 467
NdeII	GATC	1 cut(s)	197
NlaIV	GGNNCC	6 cut(s)	54, 88, 199, 445, 470, 538
NmuCI	GTSAC	1 cut(s)	524
PfeI	GAWTC	5 cut(s)	66, 306, 394, 474, 553
PfoI	TCCNGGA	2 cut(s)	83, 309
PkrI	GCNGC	3 cut(s)	237, 240, 338
PleI	GAGTC	3 cut(s)	139, 258, 377
PpsI	GAGTC	3 cut(s)	139, 258, 377
PpuMI	RGGWCCY	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	6 cut(s)	54, 88, 199, 445, 470, 538
PspPI	GGNCC	6 cut(s)	53, 87, 285, 469, 536, 584
PspPPI	RGGWCCY	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	3 cut(s)	236, 239, 337
Sau3AI	GATC	1 cut(s)	197
Sau96I	GGNCC	6 cut(s)	53, 87, 285, 469, 536, 584
SchI	GAGTC	3 cut(s)	140, 259, 377
ScrFI	CCNGG	6 cut(s)	51, 85, 99, 311, 448, 467
SduI	GDGCHC	2 cut(s)	11, 571
SetI	ASST	6 cut(s)	76, 92, 147, 217, 436, 452
SfaNI	GCATC	1 cut(s)	48
SinI	GGWCC	2 cut(s)	53, 87
SpeI	ACTAGT	1 cut(s)	14
Sse9I	AATT	2 cut(s)	370, 594
SsiI	CCGC	5 cut(s)	168, 236, 262, 336, 547
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	6 cut(s)	49, 83, 97, 309, 446, 465
StyI	CCWWGG	1 cut(s)	193
TaqI	TCGA	9 cut(s)	253, 269, 304, 349, 364, 378, 477, 507, 562
TasI	AATT	2 cut(s)	370, 594
TauI	GCSGC	2 cut(s)	238, 339
TfiI	GAWTC	5 cut(s)	66, 306, 394, 474, 553
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	1 cut(s)	407
TspRI	CASTG	1 cut(s)	132
VpaK11BI	GGWCC	2 cut(s)	53, 87
XapI	RAATTY	1 cut(s)	370
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.