Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003535

Physical Location & Seq

Genomic Coordinates Reverse (-)

2897296 .. 2899026

Gene Structure 1731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1731 bp

ATGCATCGCGCCACCGCCGCCACTAACCCACTCCAAACCCTCCTCGACCTCATCAACTCCACCCTATCCCTCCTCCTCCGCTCCTCCCTCAGCGTCCACTCCTTCGTCGGCCGCTGGACCGCCCTCAACTCCAAGCTCGCATCCCTCCACTCCTCCGTTGCCGACATCTCCGACTCCCCCCACTGGGCCCAGAATCCCCTCCTGCACACCCTCCTCCCTCAACTCCTCTCCACTCTCCAGCGCCTCACCGCCCTCGCCGATCAATGTACCGACGCCGAGTTCGCCGGCGGGAAGCTCCTAATGCAGAGCGACCTCGATATGGCCGCCTCCTCGCTCTCCAATCAGCTTCGCGACCTCGACTTGTTGCTCAGATCTGGAGTCCTCCACCAGTCAAACGCAATTGTTTTGTCCCACCCGGGTCCCGGGTCGGATAAAGAGGATTTGGGCTTCTTTATCAGAGACCTCTTCACCCGGTTGCAAATCGGCGGCGTCGAGTTCAAGAAAAAGGCTCTTGAGTCGCTCCTTCAGCTCCTCAACGGCGGCGACGACAAGTCGCCCGGCCTCGTCGCCAGGGAAGGTAATGTCGCATATTTGATTCATTTGCTCGATTTCCACCAGCAGCCTTCCGTCCGCGAGCAGGCTATCTTCGCCGTCTGCCTCCTGGCCTCCGCGGACGACGAGTCCTCGCGCAAGGCAGTGTTCGAAGAAGGGGGTCTGGGTCCTCTGCTGAGAATACTCGAATCCGGGTCTACCCATTTGAAAGAGAAGGCCGCGATGGCGGTAGAGGCACTCACCGGCGACCCAGAAAATGCCTGGGCCGTCTCCGCCTACGGTGGCGTCTCGGTCCTCATTGAAGGCTGCCGATCTGGGTCTCCGGCGACCCGGACACATGCTGCCGGCGCCATTAGAAATATTGCCAATGTGGAAGAAATAAAAACTGCTTTGGGAGAAGAAGGGGCCGTGCCAGTACTAATCCAGTTACTTCTCTCCGGCACCATGACCGCCCAAGAAAAATCAGCCAATTGCATAGCGATTTTAGCCTCCTCTGACGAGTATTTCCGAGCTCTGATCATTCGAGAACGTGCGTTGCAGAGATTAATGCATTTGATCCAAGATTTACCGAGCTCGGACACATTGGAACACGTCCTCCGAGCCATCACATCGCTTTCAGCATCAGATTCCTGCTCTAAAATCCTGTCGTCTTCAACCCTTTTCCTGGTTCAACTCGCCGAGTTCATAAAGCAGGGCAACACAACGCTACAACAAATCTCAGTCTCCTTACTCGCTCACTTATCGGTGCATGTGAGCGATGGGAATAAGCGAGCGTTGGGCAGCTGTATGGGGTCGTTGGTGAAGCTCATGGAGTCGCCGAAACCGGTGGGTCTACAAGAATCGGCAGCCCAATCGCTTTTGTCGCTGTTGACTGTCCGGTCGAACCGGAAAGAGCTGGTGAGAGATGAGAAGAGCGTGATGAGGCTGGTCCAGATGCTGGACCCAAAGAATCACGAGATGGTGAGCAGCAACTTTCCGGTGGCGGTGGTCGCGGCGGTGCTCAGCGGAGGGAGCGGTGGGTGCCGGAAAAGGCTGGTGGCCGCCGGAGCTTATCCGCATATGCAGAGACTGGCGGAAATGGAGGTCGCCGGAGCAAAGAAGGCGTTGCAGAGACTCACCGGCGGTAGGCTAAAGACCATCTTCTCCTGGACTTGGAGGGGAATAGATCCTGGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

577

Amino Acids

61.86

Weight (kDa)

7.0

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7032	PF23005	20 - 127	2.7e-32	Domain of unknown function (DUF7032)
ARM_ARMC5	PF24768	190 - 346	6e-10	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05810 AT2G05810
fragaria_vesca	FvH4_1g21781 FvH4_3g23060 FvH4_6g42120
malus_domestica	MD09G1114400.v1.1 MD17G1106100.v1.1
prunus_persica	Prupe.3G210100_v2.0.a1
pyrus_communis	pycom09g03890 pycom17g09870
rosa_chinensis	RchiOBHm_Chr2g0158031
rosa_laevigata	RLG00000005113 RLG00000009946 RLG00000011412 RLG00000014991 RLG00000021051 RLG00000034476
rosa_multiflora	Rmu_co8383981.1_g000001 Rmu_sc0000419.1_g000016 Rmu_sc0004064.1_g000016 Rmu_sc0009909.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091730 Rroxscaffold_7G00168560
rosa_rugosa	Rorug02G0465300
rosa_samantha	Rh2AG531300 Rh2BG545800 Rh2CG515600 Rh2DG553900 Rh3AG074100 Rh3CG075500 Rh4AG058000 Rh4BG056800 Rh6AG401300 Rh6CG415200
rosa_wichuraiana	Rw2G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1429
AccB1I	GGYRCC	3 cut(s)	899, 992, 1572
AccB7I	CCANNNNNTGG	1 cut(s)	1489
AccBSI	CCGCTC	2 cut(s)	81, 1566
AccI	GTMKAC	2 cut(s)	749, 1384
AccII	CGCG	7 cut(s)	9, 351, 633, 671, 688, 773, 1544
AclWI	GGATC	2 cut(s)	1102, 1712
AcoI	YGGCCR	3 cut(s)	109, 321, 1590
AcuI	CTGAAG	1 cut(s)	509
AcyI	GRCGYC	4 cut(s)	273, 489, 837, 900
AfaI	GTAC	2 cut(s)	268, 969
AfiI	CCNNNNNNNGG	9 cut(s)	183, 184, 319, 422, 637, 1216, 1489, 1677, 1704
AflIII	ACRYGT	1 cut(s)	1141
AgeI	ACCGGT	1 cut(s)	1375
AgsI	TTSAA	5 cut(s)	499, 760, 854, 1206, 1223
AhdI	GACNNNNNGTC	2 cut(s)	550, 679
AjiI	CACGTC	1 cut(s)	1144
AjnI	CCWGG	6 cut(s)	569, 660, 812, 1215, 1697, 1720
AloI	GAACNNNNNNTCC	2 cut(s)	1131, 1163
Alw21I	GWGCWC	3 cut(s)	1066, 1127, 1554
Alw26I	GTCTC	7 cut(s)	453, 826, 844, 876, 1279, 1612, 1657
AlwI	GGATC	2 cut(s)	1102, 1712
AlwNI	CAGNNNCTG	2 cut(s)	1489, 1621
Ama87I	CYCGRG	2 cut(s)	415, 422
AoxI	GGCC	9 cut(s)	109, 186, 321, 559, 663, 768, 816, 957, 1590
ApaI	GGGCCC	1 cut(s)	190
ApeKI	GCWGC	6 cut(s)	619, 858, 893, 1332, 1397, 1518
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AseI	ATTAAT	1 cut(s)	1097
AsiGI	ACCGGT	1 cut(s)	1375
AspLEI	GCGC	4 cut(s)	11, 243, 690, 902
AsuC2I	CCSGG	8 cut(s)	416, 417, 423, 424, 472, 558, 745, 883
AsuHPI	GGTGA	7 cut(s)	238, 460, 784, 1363, 1462, 1525, 1660
AsuII	TTCGAA	1 cut(s)	702
AvaI	CYCGRG	2 cut(s)	415, 422
AvaII	GGWCC	6 cut(s)	117, 419, 719, 844, 1480, 1492
BaeGI	GKGCMC	1 cut(s)	190
BanI	GGYRCC	3 cut(s)	899, 992, 1572
BanII	GRGCYC	3 cut(s)	190, 1066, 1127
BauI	CACGAG	1 cut(s)	1505
BbsI	GAAGAC	1 cut(s)	1194
Bbv12I	GWGCWC	3 cut(s)	1066, 1127, 1554
BbvCI	CCTCAGC	1 cut(s)	89
BbvI	GCAGC	6 cut(s)	631, 845, 880, 1344, 1409, 1530
BccI	CCATC	5 cut(s)	769, 1163, 1304, 1504, 1697
BceAI	ACGGC	4 cut(s)	553, 635, 803, 944
BcgI	CGANNNNNNTGC	2 cut(s)	1386, 1420
BciT130I	CCWGG	6 cut(s)	571, 662, 814, 1217, 1699, 1722
BclI	TGATCA	1 cut(s)	1068
BcnI	CCSGG	8 cut(s)	416, 417, 423, 424, 472, 558, 745, 883
BcoDI	GTCTC	7 cut(s)	453, 826, 844, 876, 1279, 1612, 1657
BfoI	RGCGCY	2 cut(s)	244, 903
BglI	GCCNNNNNGGC	1 cut(s)	776
BglII	AGATCT	1 cut(s)	371
BlpI	GCTNAGC	1 cut(s)	1553
BmcAI	AGTACT	1 cut(s)	969
Bme18I	GGWCC	6 cut(s)	117, 419, 719, 844, 1480, 1492
BmeRI	GACNNNNNGTC	2 cut(s)	550, 679
BmeT110I	CYCGRG	2 cut(s)	415, 422
BmgBI	CACGTC	1 cut(s)	1144
BmiI	GGNNCC	9 cut(s)	188, 420, 421, 720, 901, 958, 994, 1494, 1574
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	4 cut(s)	13, 149, 1181, 1476
BmuI	ACTGGG	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	1194
BpmI	CTGGAG	2 cut(s)	221, 396
Bpu10I	CCTNAGC	1 cut(s)	89
Bpu1102I	GCTNAGC	1 cut(s)	1553
Bpu14I	TTCGAA	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	8 cut(s)	416, 417, 423, 424, 472, 558, 745, 883
BsaHI	GRCGYC	4 cut(s)	273, 489, 837, 900
BsaI	GGTCTC	2 cut(s)	453, 876
BsaJI	CCNNGG	5 cut(s)	415, 422, 570, 669, 813
BsaWI	WCCGGW	4 cut(s)	1375, 1428, 1437, 1528
BsaXI	ACNNNNNCTCC	2 cut(s)	1131, 1161
Bsc4I	CCNNNNNNNGG	9 cut(s)	183, 184, 319, 422, 637, 1216, 1489, 1677, 1704
Bse118I	RCCGGY	5 cut(s)	284, 794, 896, 1375, 1670
Bse1I	ACTGG	5 cut(s)	188, 388, 965, 976, 1626
BseBI	CCWGG	6 cut(s)	571, 662, 814, 1217, 1699, 1722
BseDI	CCNNGG	5 cut(s)	415, 422, 570, 669, 813
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	9 cut(s)	183, 184, 319, 422, 637, 1216, 1489, 1677, 1704
BseMII	CTCAG	5 cut(s)	103, 382, 719, 1284, 1567
BseNI	ACTGG	5 cut(s)	188, 388, 965, 976, 1626
BseSI	GKGCMC	1 cut(s)	190
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	6 cut(s)	631, 845, 880, 1344, 1409, 1530
BsgI	GTGCAG	1 cut(s)	188
Bsh1236I	CGCG	7 cut(s)	9, 351, 633, 671, 688, 773, 1544
Bsh1285I	CGRYCG	2 cut(s)	112, 1433
BshFI	GGCC	9 cut(s)	111, 188, 323, 561, 665, 770, 818, 959, 1592
BshNI	GGYRCC	3 cut(s)	899, 992, 1572
BshTI	ACCGGT	1 cut(s)	1375
BsiEI	CGRYCG	2 cut(s)	112, 1433
BsiHKAI	GWGCWC	3 cut(s)	1066, 1127, 1554
BsiHKCI	CYCGRG	2 cut(s)	415, 422
BslFI	GGGAC	2 cut(s)	394, 405
BslI	CCNNNNNNNGG	9 cut(s)	183, 184, 319, 422, 637, 1216, 1489, 1677, 1704
BsmAI	GTCTC	7 cut(s)	453, 826, 844, 876, 1279, 1612, 1657
BsmBI	CGTCTC	2 cut(s)	826, 844
BsmFI	GGGAC	2 cut(s)	394, 405
BsnI	GGCC	9 cut(s)	111, 188, 323, 561, 665, 770, 818, 959, 1592
Bso31I	GGTCTC	2 cut(s)	453, 876
BsoBI	CYCGRG	2 cut(s)	415, 422
Bsp119I	TTCGAA	1 cut(s)	702
Bsp120I	GGGCCC	1 cut(s)	186
Bsp1286I	GDGCHC	4 cut(s)	190, 1066, 1127, 1554
Bsp143I	GATC	6 cut(s)	259, 371, 863, 1068, 1107, 1717
Bsp1720I	GCTNAGC	1 cut(s)	1553
Bsp68I	TCGCGA	1 cut(s)	351
BspANI	GGCC	9 cut(s)	111, 188, 323, 561, 665, 770, 818, 959, 1592
BspCNI	CTCAG	5 cut(s)	102, 381, 720, 1283, 1566
BspFNI	CGCG	7 cut(s)	9, 351, 633, 671, 688, 773, 1544
BspLI	GGNNCC	9 cut(s)	188, 420, 421, 720, 901, 958, 994, 1494, 1574
BspPI	GGATC	2 cut(s)	1102, 1712
BspQI	GCTCTTC	1 cut(s)	1457
BspT104I	TTCGAA	1 cut(s)	702
BspT107I	GGYRCC	3 cut(s)	899, 992, 1572
BspTNI	GGTCTC	2 cut(s)	453, 876
BsrBI	CCGCTC	2 cut(s)	81, 1566
BsrFI	RCCGGY	5 cut(s)	284, 794, 896, 1375, 1670
BsrI	ACTGG	5 cut(s)	188, 388, 965, 976, 1626
BssAI	RCCGGY	5 cut(s)	284, 794, 896, 1375, 1670
BssECI	CCNNGG	5 cut(s)	415, 422, 570, 669, 813
BssMI	GATC	6 cut(s)	259, 371, 863, 1068, 1107, 1717
BssNI	GRCGYC	4 cut(s)	273, 489, 837, 900
BssSI	CACGAG	1 cut(s)	1505
Bst2BI	CACGAG	1 cut(s)	1505
Bst2UI	CCWGG	6 cut(s)	571, 662, 814, 1217, 1699, 1722
Bst4CI	ACNGT	2 cut(s)	833, 1426
Bst6I	CTCTTC	2 cut(s)	470, 1457
BstACI	GRCGYC	4 cut(s)	273, 489, 837, 900
BstBI	TTCGAA	1 cut(s)	702
BstC8I	GCNNGC	6 cut(s)	138, 286, 635, 639, 898, 1323
BstDEI	CTNAG	5 cut(s)	89, 368, 728, 1270, 1553
BstDSI	CCRYGG	1 cut(s)	669
BstF5I	GGATG	1 cut(s)	140
BstFNI	CGCG	7 cut(s)	9, 351, 633, 671, 688, 773, 1544
BstH2I	RGCGCY	2 cut(s)	244, 903
BstHHI	GCGC	4 cut(s)	11, 243, 690, 902
BstKTI	GATC	6 cut(s)	262, 374, 866, 1071, 1110, 1720
BstMAI	GTCTC	7 cut(s)	453, 826, 844, 876, 1279, 1612, 1657
BstMBI	GATC	6 cut(s)	259, 371, 863, 1068, 1107, 1717
BstMCI	CGRYCG	2 cut(s)	112, 1433
BstNI	CCWGG	6 cut(s)	571, 662, 814, 1217, 1699, 1722
BstNSI	RCATGY	2 cut(s)	893, 1304
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	7 cut(s)	9, 351, 633, 671, 688, 773, 1544
BstV1I	GCAGC	6 cut(s)	631, 845, 880, 1344, 1409, 1530
BstV2I	GAAGAC	1 cut(s)	1194
BstX2I	RGATCY	2 cut(s)	371, 1717
BstYI	RGATCY	2 cut(s)	371, 1717
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	9 cut(s)	111, 188, 323, 561, 665, 770, 818, 959, 1592
BtgI	CCRYGG	1 cut(s)	669
BtgZI	GCGATG	3 cut(s)	788, 1146, 1323
BtrI	CACGTC	1 cut(s)	1144
BtsCI	GGATG	1 cut(s)	140
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	2 cut(s)	181, 702
BtuMI	TCGCGA	1 cut(s)	351
Cac8I	GCNNGC	6 cut(s)	138, 286, 635, 639, 898, 1323
CaiI	CAGNNNCTG	2 cut(s)	1489, 1621
CfoI	GCGC	4 cut(s)	11, 243, 690, 902
Cfr10I	RCCGGY	5 cut(s)	284, 794, 896, 1375, 1670
Cfr42I	CCGCGG	1 cut(s)	672
Cfr9I	CCCGGG	2 cut(s)	415, 422
CseI	GACGC	4 cut(s)	82, 281, 478, 826
Csp6I	GTAC	2 cut(s)	267, 968
CspAI	ACCGGT	1 cut(s)	1375
CviAII	CATG	4 cut(s)	890, 997, 1301, 1360
CviQI	GTAC	2 cut(s)	267, 968
DdeI	CTNAG	5 cut(s)	89, 368, 728, 1270, 1553
DinI	GGCGCC	1 cut(s)	901
DpnI	GATC	6 cut(s)	261, 373, 865, 1070, 1109, 1719
DpnII	GATC	6 cut(s)	259, 371, 863, 1068, 1107, 1717
DrdI	GACNNNNNNGTC	1 cut(s)	1429
DriI	GACNNNNNGTC	2 cut(s)	550, 679
DseDI	GACNNNNNNGTC	1 cut(s)	1429
EaeI	YGGCCR	3 cut(s)	109, 321, 1590
EagI	CGGCCG	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	470, 1457
Eam1105I	GACNNNNNGTC	2 cut(s)	550, 679
EarI	CTCTTC	2 cut(s)	470, 1457
EciI	GGCGGA	2 cut(s)	814, 1640
Ecl136II	GAGCTC	2 cut(s)	1064, 1125
EclXI	CGGCCG	1 cut(s)	109
Eco24I	GRGCYC	3 cut(s)	190, 1066, 1127
Eco31I	GGTCTC	2 cut(s)	453, 876
Eco47I	GGWCC	6 cut(s)	117, 419, 719, 844, 1480, 1492
Eco52I	CGGCCG	1 cut(s)	109
Eco53kI	GAGCTC	2 cut(s)	1064, 1125
Eco57I	CTGAAG	1 cut(s)	509
Eco88I	CYCGRG	2 cut(s)	415, 422
EcoICRI	GAGCTC	2 cut(s)	1064, 1125
EcoO109I	RGGNCCY	2 cut(s)	419, 719
EcoRII	CCWGG	6 cut(s)	569, 660, 812, 1215, 1697, 1720
EcoT22I	ATGCAT	2 cut(s)	6, 1104
EcoT38I	GRGCYC	3 cut(s)	190, 1066, 1127
EgeI	GGCGCC	1 cut(s)	901
EheI	GGCGCC	1 cut(s)	901
Esp3I	CGTCTC	2 cut(s)	826, 844
FaeI	CATG	4 cut(s)	893, 1000, 1304, 1363
FalI	AAGNNNNNCTT	2 cut(s)	1676, 1708
FaqI	GGGAC	2 cut(s)	394, 405
FatI	CATG	4 cut(s)	889, 996, 1300, 1359
FauI	CCCGC	1 cut(s)	281
FauNDI	CATATG	1 cut(s)	1611
FbaI	TGATCA	1 cut(s)	1068
FblI	GTMKAC	2 cut(s)	749, 1384
FokI	GGATG	1 cut(s)	127
FriOI	GRGCYC	3 cut(s)	190, 1066, 1127
GlaI	GCGC	4 cut(s)	10, 242, 689, 901
GsuI	CTGGAG	2 cut(s)	221, 396
HaeII	RGCGCY	2 cut(s)	244, 903
HaeIII	GGCC	9 cut(s)	111, 188, 323, 561, 665, 770, 818, 959, 1592
HgaI	GACGC	4 cut(s)	82, 281, 478, 826
HhaI	GCGC	4 cut(s)	11, 243, 690, 902
Hin1I	GRCGYC	4 cut(s)	273, 489, 837, 900
Hin1II	CATG	4 cut(s)	893, 1000, 1304, 1363
Hin6I	GCGC	4 cut(s)	9, 241, 688, 900
HinP1I	GCGC	4 cut(s)	9, 241, 688, 900
HincII	GTYRAC	1 cut(s)	1422
HindII	GTYRAC	1 cut(s)	1422
HphI	GGTGA	7 cut(s)	238, 460, 784, 1363, 1462, 1525, 1660
Hpy166II	GTNNAC	4 cut(s)	97, 750, 1385, 1422
Hpy188III	TCNNGA	7 cut(s)	350, 375, 499, 512, 1076, 1483, 1505
Hpy8I	GTNNAC	4 cut(s)	97, 750, 1385, 1422
Hpy99I	CGWCG	6 cut(s)	110, 275, 494, 548, 569, 680
HpyAV	CCTTC	9 cut(s)	112, 533, 569, 633, 701, 760, 848, 947, 1645
HpyCH4III	ACNGT	2 cut(s)	833, 1426
HpyCH4IV	ACGT	2 cut(s)	1081, 1143
HpyF3I	CTNAG	5 cut(s)	89, 368, 728, 1270, 1553
HpySE526I	ACGT	2 cut(s)	1081, 1143
Hsp92I	GRCGYC	4 cut(s)	273, 489, 837, 900
Hsp92II	CATG	4 cut(s)	893, 1000, 1304, 1363
HspAI	GCGC	4 cut(s)	9, 241, 688, 900
KasI	GGCGCC	1 cut(s)	899
KflI	GGGWCCC	1 cut(s)	419
KroI	GCCGGC	2 cut(s)	284, 896
KroNI	GCCGGC	2 cut(s)	286, 898
Ksp22I	TGATCA	1 cut(s)	1068
KspI	CCGCGG	1 cut(s)	672
Kzo9I	GATC	6 cut(s)	259, 371, 863, 1068, 1107, 1717
LguI	GCTCTTC	1 cut(s)	1457
LmnI	GCTCC	7 cut(s)	86, 300, 525, 534, 1563, 1598, 1643
Lsp1109I	GCAGC	6 cut(s)	631, 845, 880, 1344, 1409, 1530
LweI	GCATC	4 cut(s)	13, 149, 1181, 1476
MaeII	ACGT	2 cut(s)	1081, 1143
MaeIII	GTNAC	1 cut(s)	978
MalI	GATC	6 cut(s)	261, 373, 865, 1070, 1109, 1719
MbiI	CCGCTC	2 cut(s)	81, 1566
MboI	GATC	6 cut(s)	259, 371, 863, 1068, 1107, 1717
MboII	GAAGA	8 cut(s)	457, 637, 716, 938, 962, 1194, 1474, 1684
MfeI	CAATTG	2 cut(s)	399, 1021
MflI	RGATCY	2 cut(s)	371, 1717
MhlI	GDGCHC	4 cut(s)	190, 1066, 1127, 1554
MluCI	AATT	3 cut(s)	399, 1021, 1726
Mly113I	GGCGCC	1 cut(s)	900
MlyI	GAGTC	6 cut(s)	167, 387, 524, 689, 1373, 1659
MmeI	TCCRAC	2 cut(s)	195, 408
Mph1103I	ATGCAT	2 cut(s)	6, 1104
MreI	CGCCGGCG	1 cut(s)	284
MroNI	GCCGGC	2 cut(s)	284, 896
MseI	TTAA	2 cut(s)	1097, 1729
MspA1I	CMGCKG	4 cut(s)	114, 671, 1335, 1557
MunI	CAATTG	2 cut(s)	399, 1021
MvaI	CCWGG	6 cut(s)	571, 662, 814, 1217, 1699, 1722
MvnI	CGCG	7 cut(s)	9, 351, 633, 671, 688, 773, 1544
NaeI	GCCGGC	2 cut(s)	286, 898
NarI	GGCGCC	1 cut(s)	900
NciI	CCSGG	8 cut(s)	416, 417, 423, 424, 472, 558, 745, 883
NdeI	CATATG	1 cut(s)	1611
NdeII	GATC	6 cut(s)	259, 371, 863, 1068, 1107, 1717
NgoMIV	GCCGGC	2 cut(s)	284, 896
NlaIII	CATG	4 cut(s)	893, 1000, 1304, 1363
NlaIV	GGNNCC	9 cut(s)	188, 420, 421, 720, 901, 958, 994, 1494, 1574
NmeAIII	GCCGAG	2 cut(s)	301, 1255
NruI	TCGCGA	1 cut(s)	351
NsiI	ATGCAT	2 cut(s)	6, 1104
NspI	RCATGY	2 cut(s)	893, 1304
NspV	TTCGAA	1 cut(s)	702
PciSI	GCTCTTC	1 cut(s)	1457
PcsI	WCGNNNNNNNCGW	2 cut(s)	489, 543
PdiI	GCCGGC	2 cut(s)	286, 898
PfeI	GAWTC	6 cut(s)	193, 595, 740, 1178, 1391, 1501
PflMI	CCANNNNNTGG	1 cut(s)	1489
PfoI	TCCNGGA	1 cut(s)	1697
PinAI	ACCGGT	1 cut(s)	1375
PleI	GAGTC	6 cut(s)	167, 386, 523, 688, 1372, 1659
PluTI	GGCGCC	1 cut(s)	903
PpsI	GAGTC	6 cut(s)	167, 386, 523, 688, 1372, 1659
PpuMI	RGGWCCY	2 cut(s)	419, 719
PshBI	ATTAAT	1 cut(s)	1097
Psp124BI	GAGCTC	2 cut(s)	1066, 1127
Psp5II	RGGWCCY	2 cut(s)	419, 719
Psp6I	CCWGG	6 cut(s)	569, 660, 812, 1215, 1697, 1720
PspGI	CCWGG	6 cut(s)	569, 660, 812, 1215, 1697, 1720
PspN4I	GGNNCC	9 cut(s)	188, 420, 421, 720, 901, 958, 994, 1494, 1574
PspOMI	GGGCCC	1 cut(s)	186
PspPPI	RGGWCCY	2 cut(s)	419, 719
PstNI	CAGNNNCTG	2 cut(s)	1489, 1621
PsuI	RGATCY	2 cut(s)	371, 1717
PvuII	CAGCTG	1 cut(s)	1335
RruI	TCGCGA	1 cut(s)	351
RsaI	GTAC	2 cut(s)	268, 969
RsaNI	GTAC	2 cut(s)	267, 968
SacI	GAGCTC	2 cut(s)	1066, 1127
SacII	CCGCGG	1 cut(s)	672
SapI	GCTCTTC	1 cut(s)	1457
SaqAI	TTAA	2 cut(s)	1097, 1729
Sau3AI	GATC	6 cut(s)	259, 371, 863, 1068, 1107, 1717
ScaI	AGTACT	1 cut(s)	969
SchI	GAGTC	6 cut(s)	167, 387, 524, 689, 1373, 1659
SduI	GDGCHC	4 cut(s)	190, 1066, 1127, 1554
SfaNI	GCATC	4 cut(s)	13, 149, 1181, 1476
SfoI	GGCGCC	1 cut(s)	901
Sfr303I	CCGCGG	1 cut(s)	672
SfuI	TTCGAA	1 cut(s)	702
SgrAI	CRCCGGYG	3 cut(s)	284, 794, 1670
SgrBI	CCGCGG	1 cut(s)	672
SinI	GGWCC	6 cut(s)	117, 419, 719, 844, 1480, 1492
SmaI	CCCGGG	2 cut(s)	417, 424
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	3 cut(s)	399, 1021, 1726
SspDI	GGCGCC	1 cut(s)	899
SspI	AATATT	1 cut(s)	913
SstI	GAGCTC	2 cut(s)	1066, 1127
TaaI	ACNGT	2 cut(s)	833, 1426
TaiI	ACGT	2 cut(s)	1084, 1146
TaqI	TCGA	9 cut(s)	45, 315, 357, 492, 606, 702, 738, 1075, 1433
TaqII	GACCGA	1 cut(s)	832
TasI	AATT	3 cut(s)	399, 1021, 1726
TatI	WGTACW	1 cut(s)	967
TauI	GCSGC	8 cut(s)	20, 114, 326, 489, 543, 773, 1547, 1595
TfiI	GAWTC	6 cut(s)	193, 595, 740, 1178, 1391, 1501
Tru1I	TTAA	2 cut(s)	1097, 1729
Tru9I	TTAA	2 cut(s)	1097, 1729
TscAI	CASTG	2 cut(s)	188, 702
TseI	GCWGC	6 cut(s)	619, 858, 893, 1332, 1397, 1518
TspDTI	ATGAA	2 cut(s)	587, 1225
TspGWI	ACGGA	2 cut(s)	145, 616
TspMI	CCCGGG	2 cut(s)	415, 422
TspRI	CASTG	2 cut(s)	188, 702
Van91I	CCANNNNNTGG	1 cut(s)	1489
VpaK11BI	GGWCC	6 cut(s)	117, 419, 719, 844, 1480, 1492
VspI	ATTAAT	1 cut(s)	1097
XceI	RCATGY	2 cut(s)	893, 1304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	810
XmaI	CCCGGG	2 cut(s)	415, 422
XmiI	GTMKAC	2 cut(s)	749, 1384
ZrmI	AGTACT	1 cut(s)	969
Zsp2I	ATGCAT	2 cut(s)	6, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.