Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001275

Physical Location & Seq

Genomic Coordinates Forward (+)

7546440 .. 7548406

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCAAGAGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGATAAACTTGGTGGTGCCTTTGCCCCCAAGCCGTCTTCTGGGCCACACAAGTCTAGGGAGTGTTTACCCTTGGTCCTTATCATCAGGAACAGGTTGAAGTATGCTCTGACATACAGAGAAGTGATTTCGATCTTGATGCAAAGGCATATTCAGGTTGATGGGAAAGTGAGGACTGACAAGACTTACCCTGCTGGTTTCATGGATGTTGTGTCTATCCCCAAAACAAATGAGAACTTCCGTCTTTTGTATGACACCAAGGGACGTTTCCGTCTCCACTCCATCAAGGATGAGGAGGCTAAGTTCAAGCTTTGCAAAGTGAGATCGATCCAATTTGGTCAGAAGGGTATTCCCTACTTGAACACATATGATGGTCGCACCATCCGTTATCCTGACCCGCTCATCAAGCCTAACGACACCATCAAGCTCGACCTTGAGGAGAACAAGATTGTGGAGTTCATTAAGTTTGATGTGGGCAACGTAGTTATGGTCACTGGAGGAAGAAACAGAGGGCGTGTTGGTGTGATTAAGAACCGTGAGAAACACAAGGGTAGCTTTGAAACCATCCACATTCAAGACTCAACAGGACATGAGTTTGCAACAAGGTTGGGAAATGTGTACACAATCGGTAAGGGAACAAAGCCATGGGTGTCCCTTCCAAAGGGTAAAGGTATTAAGTTGACCATCATTGAGGAAGCCAGGAAGAGACTTTCTGCTCAACAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_S4_C KOW RS4NT Ribosomal_S4e S4

Protein Analysis

261

Amino Acids

29.8

Weight (kDa)

10.18

Isoelectric Point (pI)

24.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RS4NT	PF08071	3 - 39	1.3e-18	RS4NT (NUC023) domain
Ribosomal_S4e	PF00900	95 - 169	4.3e-35	Ribosomal family S4e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17360 AT2G17360 AT5G07090 AT5G07090 AT5G07090 AT5G58420
fragaria_vesca	FvH4_3g13310 FvH4_3g39480 FvH4_3g39480 FvH4_7g25090 FvH4_7g25090
malus_domestica	MD03G1060900.v1.1 MD05G1242900.v1.1 MD10G1225000.v1.1 MD11G1063600.v1.1
prunus_persica	Prupe.2G255500_v2.0.a1 Prupe.4G120500_v2.0.a1 Prupe.6G051000_v2.0.a1 Prupe.6G051000_v2.0.a1 Prupe.6G051000_v2.0.a1
pyrus_communis	pycom05g21950 pycom07g20470 pycom10g18880 pycom11g05360
rosa_chinensis	RchiOBHm_Chr1g0370941 RchiOBHm_Chr5g0021781 RchiOBHm_Chr5g0071221
rosa_laevigata	RLG00000026997 RLG00000032627 RLG00000036192
rosa_multiflora	Rmu_sc0001018.1_g000004 Rmu_sc0005531.1_g000001 Rmu_sc0006928.1_g000028 Rmu_sc0022073.1_g000003 Rmu_ssc0000233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009920 Rroxscaffold_1G00056930 Rroxscaffold_4G00286110
rosa_rugosa	Rorug01G0360300 Rorug05G0069500 Rorug05G0410600.1
rosa_samantha	Rh1AG370400 Rh1BG334100 Rh1CG347400 Rh1DG365300 Rh4AG270900 Rh5AG158000 Rh5BG157500 Rh5CG171700 Rh5CG509500 Rh5DG157800 Rh5DG496400
rosa_wichuraiana	Rw1G032600 Rw5G014070 Rw5G043340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	327
AccB1I	GGYRCC	1 cut(s)	74
AccBSI	CCGCTC	1 cut(s)	457
AciI	CCGC	1 cut(s)	455
AclWI	GGATC	1 cut(s)	379
AfaI	GTAC	1 cut(s)	677
AfiI	CCNNNNNNNGG	2 cut(s)	98, 718
AgsI	TTSAA	7 cut(s)	16, 28, 157, 364, 418, 617, 632
AjnI	CCWGG	1 cut(s)	755
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AloI	GAACNNNNNNTCC	2 cut(s)	344, 376
AluBI	AGCT	4 cut(s)	367, 484, 612, 782
AluI	AGCT	4 cut(s)	367, 484, 612, 782
Alw26I	GTCTC	2 cut(s)	335, 757
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	101, 133
AvaII	GGWCC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	87
BccI	CCATC	7 cut(s)	212, 347, 422, 446, 485, 629, 749
BceAI	ACGGC	1 cut(s)	76
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	1 cut(s)	757
BcoDI	GTCTC	2 cut(s)	335, 757
BfaI	CTAG	1 cut(s)	114
Bme1390I	CCNGG	1 cut(s)	757
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	101, 133
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	757
BmsI	GCATC	2 cut(s)	45, 186
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	512
Bsa29I	ATCGAT	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	129, 315, 701
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 718
Bse1I	ACTGG	1 cut(s)	556
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	757
BseCI	ATCGAT	1 cut(s)	383
BseDI	CCNNGG	3 cut(s)	129, 315, 701
BseGI	GGATG	5 cut(s)	60, 268, 352, 438, 621
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	2 cut(s)	98, 718
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	2 cut(s)	365, 509
BshFI	GGCC	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	383
BslFI	GGGAC	2 cut(s)	333, 694
BslI	CCNNNNNNNGG	2 cut(s)	98, 718
BsmAI	GTCTC	2 cut(s)	335, 757
BsmBI	CGTCTC	1 cut(s)	335
BsmFI	GGGAC	2 cut(s)	333, 694
BsnI	GGCC	1 cut(s)	103
Bsp1407I	TGTACA	1 cut(s)	675
Bsp143I	GATC	3 cut(s)	189, 380, 384
Bsp19I	CCATGG	1 cut(s)	701
BspACI	CCGC	1 cut(s)	455
BspANI	GGCC	1 cut(s)	103
BspDI	ATCGAT	1 cut(s)	383
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	379
BspT107I	GGYRCC	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	457
BsrGI	TGTACA	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	3 cut(s)	129, 315, 701
BssMI	GATC	3 cut(s)	189, 380, 384
BssT1I	CCWWGG	3 cut(s)	129, 315, 701
Bst2UI	CCWGG	1 cut(s)	757
Bst4CI	ACNGT	1 cut(s)	593
Bst6I	CTCTTC	2 cut(s)	23, 755
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstAUI	TGTACA	1 cut(s)	675
BstDEI	CTNAG	2 cut(s)	45, 357
BstDSI	CCRYGG	1 cut(s)	701
BstENI	CCTNNNNNAGG	1 cut(s)	716
BstF5I	GGATG	5 cut(s)	60, 268, 352, 438, 621
BstKTI	GATC	3 cut(s)	192, 383, 387
BstMAI	GTCTC	2 cut(s)	335, 757
BstMBI	GATC	3 cut(s)	189, 380, 384
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 463, 779
BstNI	CCWGG	1 cut(s)	757
BstSCI	CCNGG	1 cut(s)	755
BstV2I	GAAGAC	1 cut(s)	87
Bsu15I	ATCGAT	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	103
BsuTUI	ATCGAT	1 cut(s)	383
BtgI	CCRYGG	1 cut(s)	701
BtsCI	GGATG	5 cut(s)	60, 268, 352, 438, 621
BtsIMutI	CAGTG	1 cut(s)	549
Cfr13I	GGNCC	2 cut(s)	101, 133
ClaI	ATCGAT	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	676
CviAII	CATG	3 cut(s)	259, 647, 702
CviQI	GTAC	1 cut(s)	676
DdeI	CTNAG	2 cut(s)	45, 357
DpnI	GATC	3 cut(s)	191, 382, 386
DpnII	GATC	3 cut(s)	189, 380, 384
DrdI	GACNNNNNNGTC	1 cut(s)	327
DseDI	GACNNNNNNGTC	1 cut(s)	327
Eam1104I	CTCTTC	2 cut(s)	23, 755
EarI	CTCTTC	2 cut(s)	23, 755
Eco130I	CCWWGG	3 cut(s)	129, 315, 701
Eco47I	GGWCC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	716
EcoRII	CCWGG	1 cut(s)	755
EcoT14I	CCWWGG	3 cut(s)	129, 315, 701
ErhI	CCWWGG	3 cut(s)	129, 315, 701
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	3 cut(s)	262, 650, 705
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	2 cut(s)	333, 694
FatI	CATG	3 cut(s)	258, 646, 701
FauI	CCCGC	1 cut(s)	462
FauNDI	CATATG	1 cut(s)	424
FokI	GGATG	5 cut(s)	67, 275, 359, 425, 608
FspBI	CTAG	1 cut(s)	114
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	1 cut(s)	103
Hin1II	CATG	3 cut(s)	262, 650, 705
HincII	GTYRAC	1 cut(s)	738
HindII	GTYRAC	1 cut(s)	738
HindIII	AAGCTT	2 cut(s)	365, 780
HinfI	GANTC	1 cut(s)	635
Hpy166II	GTNNAC	4 cut(s)	125, 676, 678, 738
Hpy188I	TCNGA	2 cut(s)	168, 399
Hpy188III	TCNNGA	4 cut(s)	145, 193, 449, 632
Hpy8I	GTNNAC	4 cut(s)	125, 676, 678, 738
HpyAV	CCTTC	2 cut(s)	394, 722
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4IV	ACGT	2 cut(s)	322, 537
HpyCH4V	TGCA	3 cut(s)	199, 372, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 463, 779
HpyF3I	CTNAG	2 cut(s)	45, 357
HpySE526I	ACGT	2 cut(s)	322, 537
Hsp92II	CATG	3 cut(s)	262, 650, 705
Kzo9I	GATC	3 cut(s)	189, 380, 384
LmnI	GCTCC	1 cut(s)	46
LweI	GCATC	2 cut(s)	45, 186
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	2 cut(s)	322, 537
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	3 cut(s)	191, 382, 386
MbiI	CCGCTC	1 cut(s)	457
MboI	GATC	3 cut(s)	189, 380, 384
MboII	GAAGA	5 cut(s)	28, 40, 87, 570, 772
MluCI	AATT	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	629
MnlI	CCTC	8 cut(s)	24, 222, 343, 346, 487, 548, 560, 742
MseI	TTAA	3 cut(s)	519, 585, 732
MspR9I	CCNGG	1 cut(s)	757
MvaI	CCWGG	1 cut(s)	757
MwoI	GCNNNNNNNGC	3 cut(s)	55, 463, 779
NcoI	CCATGG	1 cut(s)	701
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	3 cut(s)	189, 380, 384
NlaIII	CATG	3 cut(s)	262, 650, 705
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	439
PleI	GAGTC	1 cut(s)	629
PpsI	GAGTC	1 cut(s)	629
Psp6I	CCWGG	1 cut(s)	755
PspGI	CCWGG	1 cut(s)	755
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	101, 133
RsaI	GTAC	1 cut(s)	677
RsaNI	GTAC	1 cut(s)	676
SaqAI	TTAA	3 cut(s)	519, 585, 732
Sau3AI	GATC	3 cut(s)	189, 380, 384
Sau96I	GGNCC	2 cut(s)	101, 133
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	1 cut(s)	757
SfaNI	GCATC	2 cut(s)	45, 186
SinI	GGWCC	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	1 cut(s)	389
SsiI	CCGC	1 cut(s)	455
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	755
StyI	CCWWGG	3 cut(s)	129, 315, 701
TaaI	ACNGT	1 cut(s)	593
TaiI	ACGT	2 cut(s)	325, 540
TaqI	TCGA	3 cut(s)	188, 383, 486
TasI	AATT	1 cut(s)	389
TatI	WGTACW	1 cut(s)	675
Tru1I	TTAA	3 cut(s)	519, 585, 732
Tru9I	TTAA	3 cut(s)	519, 585, 732
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	1 cut(s)	547
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	2 cut(s)	247, 505
TspGWI	ACGGA	3 cut(s)	287, 317, 431
TspRI	CASTG	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	133
XagI	CCTNNNNNAGG	1 cut(s)	716
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.