RchiOBHm_Chr1g0370941

Belongs to the eukaryotic ribosomal protein eS4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001275
Physical Location & Seq
Forward (+)
60285512 .. 60287946
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59505

Sequence Viewer

Length: 795 bp
ATGGCTAGGGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGTGGCGCATTTGCACCTAAGCCCTCATCTGGACCTCACAAGGCCAGGGAATGCCTGCCATTGATCATTATCTTGCGAAACCGGTTGAAATATGCTCTCACTTACCGTGAAGTCATTTCCATTTTGATGCAACGACATGTTCTGGTTGATGGGAAGGTTAGGACTGACAAAACCTATCCTTCAGGTTTCATGGATGTTATATCAATCCCGAAAACAAATGAGAATTTTCGTCTCCTTTATGACACAAAGGGTCGGTTCCGCCTCCACTCAATCAGGGATGAAGAGTCAAAGTTTAAACTGTGCAAAGTCCGCTCTGTACAGTTTGGGCAAAAGAATATCCCCTACATTAACACCTATGATGGGCGTACAATCCGCTACCCTGACCCTCTCATCAAAGCCAATGACACCATCAAGCTTGACCTAGAGACCAACAAGATCACCGACTTCATTAAGTTTGACGTTGGGAATGTGGTCATGGTTACTGGTGGAAGGAACAGGGGGCGTGTTGGTGTGATCAAGAACAGGGAGAAACACAAGGGAAGTTTTGAGACCATCCACGTCCAGGATGCAACTGGTCATGAGTTTGCAACCCGTTTGGCGAATGTGTTCACCATTGGCAAGGGAACAAAGCCATGGGTGAGTCTGCCCAAGGGAAGAGGTATTAAGCTCTCGATCATCGAGGAGGCCAGAAAGAGGCAAGCAGCTCAACAAGCATCTGCCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
40S_S4_C KOW RS4NT Ribosomal_S4e S4

Protein Analysis

264

Amino Acids

30.03

Weight (kDa)

10.32

Isoelectric Point (pI)

24.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RS4NT PF08071 3 - 39 1.4e-18 RS4NT (NUC023) domain
Ribosomal_S4e PF00900 95 - 169 1.7e-33 Ribosomal family S4e
KOW PF00467 177 - 210 1.9e-06 KOW motif
40S_S4_C PF16121 212 - 258 5.9e-25 40S ribosomal protein S4 C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 381
AciI CCGC 4 cut(s) 328, 379, 442, 789
AcsI RAATTY 1 cut(s) 292
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 2 cut(s) 387, 436
AfiI CCNNNNNNNGG 4 cut(s) 98, 429, 631, 762
AflIII ACRYGT 1 cut(s) 205
AgeI ACCGGT 1 cut(s) 150
AgsI TTSAA 3 cut(s) 16, 28, 157
AjiI CACGTC 1 cut(s) 628
AjnI CCWGG 2 cut(s) 113, 630
AluBI AGCT 3 cut(s) 484, 736, 773
AluI AGCT 3 cut(s) 484, 736, 773
Alw26I GTCTC 3 cut(s) 305, 488, 611
AoxI GGCC 2 cut(s) 111, 753
ApeKI GCWGC 1 cut(s) 770
ApoI RAATTY 1 cut(s) 292
AsiGI ACCGGT 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 674
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 3 cut(s) 499, 670, 718
AvaII GGWCC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 782
BccI CCATC 4 cut(s) 212, 422, 485, 629
BciT130I CCWGG 2 cut(s) 115, 632
BclI TGATCA 2 cut(s) 132, 582
BcoDI GTCTC 3 cut(s) 305, 488, 611
BfaI CTAG 2 cut(s) 6, 491
BisI GCNGC 2 cut(s) 771, 789
BlsI GCNGC 2 cut(s) 772, 790
Bme1390I CCNGG 2 cut(s) 115, 632
Bme18I GGWCC 1 cut(s) 101
BmgBI CACGTC 1 cut(s) 628
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 326
BmrFI CCNGG 2 cut(s) 115, 632
BmsI GCATC 4 cut(s) 45, 186, 625, 791
Bpu10I CCTNAGC 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 137
BsaI GGTCTC 2 cut(s) 488, 611
BsaJI CCNNGG 3 cut(s) 114, 701, 717
BsaWI WCCGGW 1 cut(s) 150
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 429, 631, 762
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 2 cut(s) 556, 646
Bse8I GATNNNNATC 1 cut(s) 137
BseBI CCWGG 2 cut(s) 115, 632
BseDI CCNNGG 3 cut(s) 114, 701, 717
BseGI GGATG 5 cut(s) 60, 268, 352, 621, 640
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 4 cut(s) 98, 429, 631, 762
BseNI ACTGG 2 cut(s) 556, 646
BseRI GAGGAG 1 cut(s) 764
BseXI GCAGC 1 cut(s) 782
BshFI GGCC 2 cut(s) 113, 755
BshTI ACCGGT 1 cut(s) 150
BsiSI CCGG 1 cut(s) 151
BslI CCNNNNNNNGG 4 cut(s) 98, 429, 631, 762
BsmAI GTCTC 3 cut(s) 305, 488, 611
BsmBI CGTCTC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 2 cut(s) 113, 755
Bso31I GGTCTC 2 cut(s) 488, 611
Bsp1407I TGTACA 1 cut(s) 385
Bsp143I GATC 4 cut(s) 132, 504, 582, 741
Bsp19I CCATGG 1 cut(s) 701
BspACI CCGC 4 cut(s) 328, 379, 442, 789
BspANI GGCC 2 cut(s) 113, 755
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 1 cut(s) 326
BspTNI GGTCTC 2 cut(s) 488, 611
BsrBI CCGCTC 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 150
BsrGI TGTACA 1 cut(s) 385
BsrI ACTGG 2 cut(s) 556, 646
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 3 cut(s) 114, 701, 717
BssMI GATC 4 cut(s) 132, 504, 582, 741
BssT1I CCWWGG 2 cut(s) 701, 717
Bst2UI CCWGG 2 cut(s) 115, 632
Bst4CI ACNGT 3 cut(s) 176, 369, 390
Bst6I CTCTTC 3 cut(s) 23, 345, 718
BstAPI GCANNNNNTGC 1 cut(s) 55
BstAUI TGTACA 1 cut(s) 385
BstC8I GCNNGC 2 cut(s) 125, 768
BstDEI CTNAG 1 cut(s) 87
BstDSI CCRYGG 1 cut(s) 701
BstF5I GGATG 5 cut(s) 60, 268, 352, 621, 640
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 4 cut(s) 135, 507, 585, 744
BstMAI GTCTC 3 cut(s) 305, 488, 611
BstMBI GATC 4 cut(s) 132, 504, 582, 741
BstMWI GCNNNNNNNGC 4 cut(s) 55, 378, 779, 788
BstNI CCWGG 2 cut(s) 115, 632
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 113, 630
BstV1I GCAGC 1 cut(s) 782
BstXI CCANNNNNNTGG 1 cut(s) 51
BsuRI GGCC 2 cut(s) 113, 755
BtgI CCRYGG 1 cut(s) 701
BtrI CACGTC 1 cut(s) 628
BtsCI GGATG 5 cut(s) 60, 268, 352, 621, 640
Cac8I GCNNGC 2 cut(s) 125, 768
CciI TCATGA 1 cut(s) 646
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 2 cut(s) 386, 435
CspAI ACCGGT 1 cut(s) 150
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 5 cut(s) 206, 259, 544, 647, 702
CviQI GTAC 2 cut(s) 386, 435
DdeI CTNAG 1 cut(s) 87
DpnI GATC 4 cut(s) 134, 506, 584, 743
DpnII GATC 4 cut(s) 132, 504, 582, 741
DraI TTTAAA 1 cut(s) 364
Eam1104I CTCTTC 3 cut(s) 23, 345, 718
EarI CTCTTC 3 cut(s) 23, 345, 718
EciI GGCGGA 1 cut(s) 317
Eco130I CCWWGG 2 cut(s) 701, 717
Eco31I GGTCTC 2 cut(s) 488, 611
Eco47I GGWCC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 113, 630
EcoT14I CCWWGG 2 cut(s) 701, 717
ErhI CCWWGG 2 cut(s) 701, 717
Esp3I CGTCTC 1 cut(s) 305
FaeI CATG 5 cut(s) 209, 262, 547, 650, 705
FatI CATG 5 cut(s) 205, 258, 543, 646, 701
FbaI TGATCA 2 cut(s) 132, 582
Fnu4HI GCNGC 2 cut(s) 771, 789
FokI GGATG 5 cut(s) 67, 275, 359, 608, 647
Fsp4HI GCNGC 2 cut(s) 771, 789
FspBI CTAG 2 cut(s) 6, 491
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 771, 789
HaeIII GGCC 2 cut(s) 113, 755
HapII CCGG 1 cut(s) 151
HhaI GCGC 1 cut(s) 77
Hin1II CATG 5 cut(s) 209, 262, 547, 650, 705
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 2 cut(s) 353, 709
HpaII CCGG 1 cut(s) 151
HphI GGTGA 3 cut(s) 499, 670, 718
Hpy166II GTNNAC 1 cut(s) 678
Hpy188III TCNNGA 5 cut(s) 99, 277, 586, 647, 739
Hpy8I GTNNAC 1 cut(s) 678
HpyAV CCTTC 3 cut(s) 217, 258, 552
HpyCH4III ACNGT 3 cut(s) 176, 369, 390
HpyCH4IV ACGT 2 cut(s) 528, 627
HpyCH4V TGCA 5 cut(s) 83, 199, 372, 638, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 378, 779, 788
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 2 cut(s) 528, 627
Hsp92II CATG 5 cut(s) 209, 262, 547, 650, 705
HspAI GCGC 1 cut(s) 75
Ksp22I TGATCA 2 cut(s) 132, 582
Kzo9I GATC 4 cut(s) 132, 504, 582, 741
Lsp1109I GCAGC 1 cut(s) 782
LweI GCATC 4 cut(s) 45, 186, 625, 791
MaeI CTAG 2 cut(s) 6, 491
MaeII ACGT 2 cut(s) 528, 627
MaeIII GTNAC 1 cut(s) 547
MalI GATC 4 cut(s) 134, 506, 584, 743
MbiI CCGCTC 1 cut(s) 381
MboI GATC 4 cut(s) 132, 504, 582, 741
MboII GAAGA 4 cut(s) 28, 40, 362, 735
MluCI AATT 1 cut(s) 292
MlyI GAGTC 2 cut(s) 362, 718
MnlI CCTC 9 cut(s) 24, 103, 114, 341, 465, 719, 742, 745, 756
MroXI GAANNNNTTC 1 cut(s) 674
MseI TTAA 4 cut(s) 363, 417, 519, 732
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 2 cut(s) 115, 632
MssI GTTTAAAC 1 cut(s) 364
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 2 cut(s) 115, 632
MwoI GCNNNNNNNGC 4 cut(s) 55, 378, 779, 788
NcoI CCATGG 1 cut(s) 701
NdeII GATC 4 cut(s) 132, 504, 582, 741
NlaIII CATG 5 cut(s) 209, 262, 547, 650, 705
NlaIV GGNNCC 1 cut(s) 326
NspI RCATGY 1 cut(s) 209
PagI TCATGA 1 cut(s) 646
PciI ACATGT 1 cut(s) 205
PctI GAATGC 1 cut(s) 125
PdmI GAANNNNTTC 1 cut(s) 674
PfoI TCCNGGA 1 cut(s) 630
PinAI ACCGGT 1 cut(s) 150
PkrI GCNGC 2 cut(s) 772, 790
PleI GAGTC 2 cut(s) 361, 717
PmeI GTTTAAAC 1 cut(s) 364
PpsI GAGTC 2 cut(s) 361, 717
PscI ACATGT 1 cut(s) 205
Psp6I CCWGG 2 cut(s) 113, 630
PspGI CCWGG 2 cut(s) 113, 630
PspN4I GGNNCC 1 cut(s) 326
PspPI GGNCC 1 cut(s) 101
RsaI GTAC 2 cut(s) 387, 436
RsaNI GTAC 2 cut(s) 386, 435
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 4 cut(s) 363, 417, 519, 732
SatI GCNGC 2 cut(s) 771, 789
Sau3AI GATC 4 cut(s) 132, 504, 582, 741
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 2 cut(s) 362, 718
ScrFI CCNGG 2 cut(s) 115, 632
SfaNI GCATC 4 cut(s) 45, 186, 625, 791
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 1 cut(s) 292
SsiI CCGC 4 cut(s) 328, 379, 442, 789
SspMI CTAG 2 cut(s) 6, 491
StyD4I CCNGG 2 cut(s) 113, 630
StyI CCWWGG 2 cut(s) 701, 717
TaaI ACNGT 3 cut(s) 176, 369, 390
TaiI ACGT 2 cut(s) 531, 630
TaqI TCGA 2 cut(s) 740, 747
TasI AATT 1 cut(s) 292
TatI WGTACW 1 cut(s) 385
TauI GCSGC 1 cut(s) 791
Tru1I TTAA 4 cut(s) 363, 417, 519, 732
Tru9I TTAA 4 cut(s) 363, 417, 519, 732
TseI GCWGC 1 cut(s) 770
TspDTI ATGAA 3 cut(s) 247, 363, 505
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 1 cut(s) 292
XceI RCATGY 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 638
XmnI GAANNNNTTC 1 cut(s) 674
XspI CTAG 2 cut(s) 6, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.