Rh5CG171700

Belongs to the eukaryotic ribosomal protein eS4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001275
Physical Location & Seq
Reverse (-)
16111651 .. 16115368
3718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG171700.1

Sequence Viewer

Length: 600 bp
ATGCAACGTCATGTTATGGTTGATGGGAAAGTTAGGACTGATAAGACTTATCCTTCTGGTTTCATGGATGTTGTCTCAATCCCCAAGACAAATGAGAATTTCCGTCTCCTTTATGACACCAAAGGACGGTTCCGTCTGCATTCAATCAGGGATGAAGAGGCAAAGTTCAAACTCTGCAAGGTCCGTTCTGTGCAGTTCGGCCAAAAGAACATCCCTTACATTAATACCTATGATGGAAGAACAATTCGTTACCCTGACCCTCTTATCAAGGCAAATGACACCATCAAGCTGGATTTGGAGACCAACAAGATCGTCGACTTTATCAAGTTTGATGTTGGTAATGTTGTCATGGTGACAGGTGGTAGGAACAGAGGGCGAGTTGGAGTAATCAAGAACAGGGAGAAGCATAAGGGAAGCTTTGAGACTATCCATGTCCAGGACGCCACTGGACATGAATTTGCAACCCGTTTGGCGAATGTGTTCACTATTGGTAAGGGGACCAAGCCATGGGTAAGCCTTCCCAAGGGTAAGGGTATTAAGCTTACCATCATTGAGGAGGCTAAGAAGAGGCAAGCAGCCCAAGCCACAGCTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
40S_S4_C KOW RS4NT Ribosomal_S4e S4

Protein Analysis

199

Amino Acids

22.52

Weight (kDa)

10.03

Isoelectric Point (pI)

12.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S4e PF00900 30 - 104 2.5e-34 Ribosomal family S4e
KOW PF00467 112 - 145 1.2e-06 KOW motif
40S_S4_C PF16121 147 - 193 4.3e-26 40S ribosomal protein S4 C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 132
AccB7I CCANNNNNTGG 1 cut(s) 507
AccI GTMKAC 1 cut(s) 315
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 2 cut(s) 97, 455
AcyI GRCGYC 1 cut(s) 441
AfiI CCNNNNNNNGG 4 cut(s) 126, 436, 507, 523
AgsI TTSAA 2 cut(s) 144, 169
AjnI CCWGG 1 cut(s) 435
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 4 cut(s) 289, 417, 541, 590
AluI AGCT 4 cut(s) 289, 417, 541, 590
Alw26I GTCTC 4 cut(s) 79, 110, 293, 416
AlwNI CAGNNNCTG 1 cut(s) 593
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 3 cut(s) 575, 590, 593
ApoI RAATTY 2 cut(s) 97, 455
AseI ATTAAT 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 479
AspS9I GGNCC 2 cut(s) 181, 498
AsuHPI GGTGA 1 cut(s) 364
AvaII GGWCC 2 cut(s) 181, 498
BbvI GCAGC 3 cut(s) 577, 580, 587
BccI CCATC 4 cut(s) 17, 227, 290, 554
BciT130I CCWGG 1 cut(s) 437
BcoDI GTCTC 4 cut(s) 79, 110, 293, 416
BisI GCNGC 3 cut(s) 576, 591, 594
BlsI GCNGC 3 cut(s) 577, 592, 595
Bme1390I CCNGG 1 cut(s) 437
Bme18I GGWCC 2 cut(s) 181, 498
BmgT120I GGNCC 2 cut(s) 181, 498
BmiI GGNNCC 2 cut(s) 131, 499
BmrFI CCNGG 1 cut(s) 437
BsaHI GRCGYC 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 506, 522
Bsc4I CCNNNNNNNGG 4 cut(s) 126, 436, 507, 523
Bse1I ACTGG 1 cut(s) 451
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 2 cut(s) 506, 522
BseGI GGATG 3 cut(s) 73, 157, 210
BseLI CCNNNNNNNGG 4 cut(s) 126, 436, 507, 523
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 3 cut(s) 577, 580, 587
BsgI GTGCAG 1 cut(s) 212
BshFI GGCC 1 cut(s) 201
BslFI GGGAC 1 cut(s) 511
BslI CCNNNNNNNGG 4 cut(s) 126, 436, 507, 523
BsmAI GTCTC 4 cut(s) 79, 110, 293, 416
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 511
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 293
Bsp143I GATC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 506
BspANI GGCC 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 131, 499
BspTNI GGTCTC 1 cut(s) 293
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 2 cut(s) 506, 522
BssMI GATC 1 cut(s) 309
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 2 cut(s) 506, 522
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 1 cut(s) 129
Bst6I CTCTTC 2 cut(s) 150, 560
BstACI GRCGYC 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 2 cut(s) 561, 597
BstDSI CCRYGG 1 cut(s) 506
BstENI CCTNNNNNAGG 1 cut(s) 521
BstF5I GGATG 3 cut(s) 73, 157, 210
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 4 cut(s) 79, 110, 293, 416
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 2 cut(s) 581, 590
BstNI CCWGG 1 cut(s) 437
BstSCI CCNGG 1 cut(s) 435
BstV1I GCAGC 3 cut(s) 577, 580, 587
BstXI CCANNNNNNTGG 1 cut(s) 289
BsuRI GGCC 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 506
BtsCI GGATG 3 cut(s) 73, 157, 210
BtsIMutI CAGTG 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 573
CaiI CAGNNNCTG 1 cut(s) 593
Cfr13I GGNCC 2 cut(s) 181, 498
CseI GACGC 1 cut(s) 449
CviAII CATG 6 cut(s) 11, 64, 349, 431, 452, 507
DdeI CTNAG 2 cut(s) 561, 597
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
DrdI GACNNNNNNGTC 1 cut(s) 132
DseDI GACNNNNNNGTC 1 cut(s) 132
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 150, 560
EarI CTCTTC 2 cut(s) 150, 560
Eco130I CCWWGG 2 cut(s) 506, 522
Eco31I GGTCTC 1 cut(s) 293
Eco47I GGWCC 2 cut(s) 181, 498
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 2 cut(s) 506, 522
ErhI CCWWGG 2 cut(s) 506, 522
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 6 cut(s) 14, 67, 352, 434, 455, 510
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 1 cut(s) 511
FatI CATG 6 cut(s) 10, 63, 348, 430, 451, 506
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 3 cut(s) 576, 591, 594
FokI GGATG 3 cut(s) 80, 164, 197
Fsp4HI GCNGC 3 cut(s) 576, 591, 594
GluI GCNGC 3 cut(s) 576, 591, 594
HaeIII GGCC 1 cut(s) 201
HgaI GACGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 6 cut(s) 14, 67, 352, 434, 455, 510
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 2 cut(s) 415, 539
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 2 cut(s) 316, 483
Hpy188III TCNNGA 1 cut(s) 391
Hpy8I GTNNAC 2 cut(s) 316, 483
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 2 cut(s) 63, 527
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 5 cut(s) 4, 139, 177, 193, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 581, 590
HpyF3I CTNAG 2 cut(s) 561, 597
HpySE526I ACGT 1 cut(s) 7
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 6 cut(s) 14, 67, 352, 434, 455, 510
Kzo9I GATC 1 cut(s) 309
LpnPI CCDG 9 cut(s) 42, 133, 267, 275, 342, 382, 422, 432, 449
Lsp1109I GCAGC 3 cut(s) 577, 580, 587
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 2 cut(s) 248, 352
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MboII GAAGA 3 cut(s) 167, 249, 577
MluCI AATT 3 cut(s) 97, 243, 455
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 6 cut(s) 151, 270, 365, 547, 550, 561
MroXI GAANNNNTTC 1 cut(s) 479
MseI TTAA 2 cut(s) 222, 537
MspA1I CMGCKG 1 cut(s) 590
MspR9I CCNGG 1 cut(s) 437
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 437
MwoI GCNNNNNNNGC 2 cut(s) 581, 590
NcoI CCATGG 1 cut(s) 506
NdeII GATC 1 cut(s) 309
NlaIII CATG 6 cut(s) 14, 67, 352, 434, 455, 510
NlaIV GGNNCC 2 cut(s) 131, 499
NmuCI GTSAC 1 cut(s) 352
PctI GAATGC 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 479
PflMI CCANNNNNTGG 1 cut(s) 507
PfoI TCCNGGA 1 cut(s) 435
PkrI GCNGC 3 cut(s) 577, 592, 595
PshBI ATTAAT 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 435
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 2 cut(s) 131, 499
PspPI GGNCC 2 cut(s) 181, 498
PsrI GAACNNNNNNTAC 2 cut(s) 200, 232
PstNI CAGNNNCTG 1 cut(s) 593
PvuII CAGCTG 1 cut(s) 590
SalI GTCGAC 1 cut(s) 314
SaqAI TTAA 2 cut(s) 222, 537
SatI GCNGC 3 cut(s) 576, 591, 594
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 2 cut(s) 181, 498
ScrFI CCNGG 1 cut(s) 437
SetI ASST 8 cut(s) 10, 183, 230, 291, 361, 419, 543, 592
SinI GGWCC 2 cut(s) 181, 498
Sse9I AATT 3 cut(s) 97, 243, 455
StyD4I CCNGG 1 cut(s) 435
StyI CCWWGG 2 cut(s) 506, 522
TaaI ACNGT 1 cut(s) 129
TaiI ACGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 315
TasI AATT 3 cut(s) 97, 243, 455
Tru1I TTAA 2 cut(s) 222, 537
Tru9I TTAA 2 cut(s) 222, 537
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 3 cut(s) 575, 590, 593
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 52, 168, 468
TspGWI ACGGA 3 cut(s) 92, 122, 173
TspRI CASTG 1 cut(s) 451
Van91I CCANNNNNTGG 1 cut(s) 507
VpaK11BI GGWCC 2 cut(s) 181, 498
VspI ATTAAT 1 cut(s) 222
XagI CCTNNNNNAGG 1 cut(s) 521
XapI RAATTY 2 cut(s) 97, 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XmiI GTMKAC 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.