Prupe.4G120500_v2.0.a1

Belongs to the eukaryotic ribosomal protein eS4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001275
Physical Location & Seq
Reverse (-)
6524005 .. 6526547
2543 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G120500.1

Sequence Viewer

Length: 795 bp
ATGGCGCGAGGATTGAAGAAGCATCTGAAGAGGCTCAATGCCCCGAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGCTCCCAAGCCTTCGTCTGGACCTCACAAATCCAGGGAATGCCTGCCATTGGTCATCATCTTAAGAAACCGATTGAAATATGCTCTAACATACCGTGAGGTCATTTCCATTTTGATGCAACGACATGTTCTGGTTGATGGGAAAGTTAGGACTGATAAGACCTATCCTTCTGGTTTTATGGATGTTGTTTCAATCCCCAAAACAAACGAGAACTTCCGTCTCCTCTATGACACCAAGGGTCGGTTCCGTCTCCATTCAATCAGGGATGAAGAGGCAAAGTTCAAGCTTTGCAAGGTCCGGTCTGTGCAGTTTGGACAAAAAGGTATCCCATATATTAACACCTATGATGGGAGAACAATCCGTTACCCAGACCCTCTCATCAAGGCTAATGACACCATTAAGCTGGACTTGGAGACCAACAAGATCACTGACTTCATCAAGTTCGATGTTGGTAATGTCGTCATGGTGACTGGTGGAAGGAATAGAGGCCGTGTTGGAGTAATCAAGAACAGGGAGAAGCATAAGGGAAGCTTTGAGACAATCCATGTCCAGGATGCCAGTGGACATGAATTCGCCACTCGGTTGGGCAATGTGTTCACAATAGGCAAGGGGACCAAGCCGTGGGTAAGCCTTCCCAAGGGTAAGGGTATTAAGCTCACCATTATTGAAGAGGCCAAGAAGAGGCAAGCAGCCCAAGCCACAGCCACAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
40S_S4_C KOW RS4NT Ribosomal_S4e S4

Protein Analysis

265

Amino Acids

29.86

Weight (kDa)

10.25

Isoelectric Point (pI)

21.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 702
AccII CGCG 1 cut(s) 7
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 1 cut(s) 47
AfiI CCNNNNNNNGG 8 cut(s) 98, 130, 321, 429, 631, 702, 718, 762
AflII CTTAAG 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 6 cut(s) 16, 157, 273, 339, 364, 749
AjnI CCWGG 2 cut(s) 113, 630
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AluBI AGCT 5 cut(s) 367, 484, 612, 736, 791
AluI AGCT 5 cut(s) 367, 484, 612, 736, 791
Alw26I GTCTC 4 cut(s) 305, 335, 488, 611
AoxI GGCC 2 cut(s) 568, 753
ApeKI GCWGC 1 cut(s) 770
ApoI RAATTY 1 cut(s) 650
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 3 cut(s) 101, 376, 693
AsuHPI GGTGA 2 cut(s) 559, 730
AvaII GGWCC 3 cut(s) 101, 376, 693
BbvI GCAGC 1 cut(s) 782
BccI CCATC 2 cut(s) 212, 422
BceAI ACGGC 2 cut(s) 555, 685
BciT130I CCWGG 2 cut(s) 115, 632
BciVI GTATCC 1 cut(s) 416
BcoDI GTCTC 4 cut(s) 305, 335, 488, 611
BfrI CTTAAG 1 cut(s) 142
BfuI GTATCC 1 cut(s) 416
BisI GCNGC 1 cut(s) 771
BlsI GCNGC 1 cut(s) 772
Bme1390I CCNGG 2 cut(s) 115, 632
Bme18I GGWCC 3 cut(s) 101, 376, 693
BmgT120I GGNCC 3 cut(s) 101, 376, 693
BmiI GGNNCC 2 cut(s) 326, 694
BmrFI CCNGG 2 cut(s) 115, 632
BmsI GCATC 4 cut(s) 31, 45, 186, 625
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 4 cut(s) 114, 315, 701, 717
BsaWI WCCGGW 1 cut(s) 378
Bsc4I CCNNNNNNNGG 8 cut(s) 98, 130, 321, 429, 631, 702, 718, 762
Bse1I ACTGG 2 cut(s) 556, 639
Bse3DI GCAATG 1 cut(s) 676
BseBI CCWGG 2 cut(s) 115, 632
BseDI CCNNGG 4 cut(s) 114, 315, 701, 717
BseGI GGATG 4 cut(s) 60, 268, 352, 640
BseLI CCNNNNNNNGG 8 cut(s) 98, 130, 321, 429, 631, 702, 718, 762
BseMI GCAATG 1 cut(s) 676
BseNI ACTGG 2 cut(s) 556, 639
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 782
BsgI GTGCAG 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 2 cut(s) 570, 755
BsiSI CCGG 1 cut(s) 379
BslFI GGGAC 1 cut(s) 706
BslI CCNNNNNNNGG 8 cut(s) 98, 130, 321, 429, 631, 702, 718, 762
BsmAI GTCTC 4 cut(s) 305, 335, 488, 611
BsmBI CGTCTC 2 cut(s) 305, 335
BsmFI GGGAC 1 cut(s) 706
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 2 cut(s) 570, 755
Bso31I GGTCTC 1 cut(s) 488
Bsp143I GATC 1 cut(s) 504
BspANI GGCC 2 cut(s) 570, 755
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 326, 694
BspTI CTTAAG 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 676
BsrI ACTGG 2 cut(s) 556, 639
BssECI CCNNGG 4 cut(s) 114, 315, 701, 717
BssMI GATC 1 cut(s) 504
BssT1I CCWWGG 2 cut(s) 315, 717
Bst2UI CCWGG 2 cut(s) 115, 632
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 4 cut(s) 23, 345, 744, 755
BstAFI CTTAAG 1 cut(s) 142
BstAPI GCANNNNNTGC 1 cut(s) 55
BstC8I GCNNGC 2 cut(s) 125, 768
BstDSI CCRYGG 1 cut(s) 701
BstENI CCTNNNNNAGG 1 cut(s) 716
BstF5I GGATG 4 cut(s) 60, 268, 352, 640
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 507
BstMAI GTCTC 4 cut(s) 305, 335, 488, 611
BstMBI GATC 1 cut(s) 504
BstMWI GCNNNNNNNGC 2 cut(s) 55, 776
BstNI CCWGG 2 cut(s) 115, 632
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 113, 630
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 782
BstXI CCANNNNNNTGG 2 cut(s) 484, 664
BsuI GTATCC 1 cut(s) 416
BsuRI GGCC 2 cut(s) 570, 755
BtgI CCRYGG 1 cut(s) 701
BtsCI GGATG 4 cut(s) 60, 268, 352, 640
BtsIMutI CAGTG 2 cut(s) 507, 646
Cac8I GCNNGC 2 cut(s) 125, 768
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 3 cut(s) 101, 376, 693
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 4 cut(s) 206, 544, 626, 647
DpnI GATC 1 cut(s) 506
DpnII GATC 1 cut(s) 504
Eam1104I CTCTTC 4 cut(s) 23, 345, 744, 755
EarI CTCTTC 4 cut(s) 23, 345, 744, 755
Eco130I CCWWGG 2 cut(s) 315, 717
Eco31I GGTCTC 1 cut(s) 488
Eco47I GGWCC 3 cut(s) 101, 376, 693
Eco57I CTGAAG 1 cut(s) 47
EcoNI CCTNNNNNAGG 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 650
EcoRII CCWGG 2 cut(s) 113, 630
EcoT14I CCWWGG 2 cut(s) 315, 717
ErhI CCWWGG 2 cut(s) 315, 717
Esp3I CGTCTC 2 cut(s) 305, 335
FaeI CATG 4 cut(s) 209, 547, 629, 650
FalI AAGNNNNNCTT 4 cut(s) 473, 505, 596, 628
FaqI GGGAC 1 cut(s) 706
FatI CATG 4 cut(s) 205, 543, 625, 646
Fnu4HI GCNGC 1 cut(s) 771
FokI GGATG 4 cut(s) 67, 275, 359, 647
Fsp4HI GCNGC 1 cut(s) 771
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 771
HaeIII GGCC 2 cut(s) 570, 755
HapII CCGG 1 cut(s) 379
HhaI GCGC 1 cut(s) 7
Hin1II CATG 4 cut(s) 209, 547, 629, 650
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 2 cut(s) 365, 610
HpaII CCGG 1 cut(s) 379
HphI GGTGA 2 cut(s) 559, 730
Hpy166II GTNNAC 2 cut(s) 644, 678
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 2 cut(s) 99, 586
Hpy8I GTNNAC 2 cut(s) 644, 678
HpyAV CCTTC 4 cut(s) 102, 258, 552, 722
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 4 cut(s) 77, 199, 372, 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 776
Hsp92II CATG 4 cut(s) 209, 547, 629, 650
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 504
LmnI GCTCC 1 cut(s) 88
Lsp1109I GCAGC 1 cut(s) 782
LweI GCATC 4 cut(s) 31, 45, 186, 625
MaeIII GTNAC 2 cut(s) 443, 547
MalI GATC 1 cut(s) 506
MboI GATC 1 cut(s) 504
MboII GAAGA 5 cut(s) 28, 40, 362, 761, 772
MluCI AATT 1 cut(s) 650
MmeI TCCRAC 1 cut(s) 556
MnlI CCTC 9 cut(s) 24, 114, 172, 314, 346, 465, 560, 745, 756
MseI TTAA 5 cut(s) 143, 417, 480, 732, 793
MslI CAYNNNNRTG 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 142
MspI CCGG 1 cut(s) 379
MspR9I CCNGG 2 cut(s) 115, 632
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 2 cut(s) 115, 632
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 55, 776
NdeII GATC 1 cut(s) 504
NlaIII CATG 4 cut(s) 209, 547, 629, 650
NlaIV GGNNCC 2 cut(s) 326, 694
NmuCI GTSAC 1 cut(s) 547
NspI RCATGY 1 cut(s) 209
PciI ACATGT 1 cut(s) 205
PctI GAATGC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 702
PfoI TCCNGGA 1 cut(s) 630
PkrI GCNGC 1 cut(s) 772
PscI ACATGT 1 cut(s) 205
Psp6I CCWGG 2 cut(s) 113, 630
PspGI CCWGG 2 cut(s) 113, 630
PspN4I GGNNCC 2 cut(s) 326, 694
PspPI GGNCC 3 cut(s) 101, 376, 693
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 5 cut(s) 143, 417, 480, 732, 793
SatI GCNGC 1 cut(s) 771
Sau3AI GATC 1 cut(s) 504
Sau96I GGNCC 3 cut(s) 101, 376, 693
ScrFI CCNGG 2 cut(s) 115, 632
SfaNI GCATC 4 cut(s) 31, 45, 186, 625
SinI GGWCC 3 cut(s) 101, 376, 693
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 1 cut(s) 650
StyD4I CCNGG 2 cut(s) 113, 630
StyI CCWWGG 2 cut(s) 315, 717
TaaI ACNGT 1 cut(s) 176
TaqI TCGA 1 cut(s) 525
TasI AATT 1 cut(s) 650
Tru1I TTAA 5 cut(s) 143, 417, 480, 732, 793
Tru9I TTAA 5 cut(s) 143, 417, 480, 732, 793
TscAI CASTG 2 cut(s) 514, 646
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 1 cut(s) 770
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 3 cut(s) 363, 505, 663
TspGWI ACGGA 3 cut(s) 287, 317, 431
TspRI CASTG 2 cut(s) 514, 646
Van91I CCANNNNNTGG 1 cut(s) 702
Vha464I CTTAAG 1 cut(s) 142
VpaK11BI GGWCC 3 cut(s) 101, 376, 693
XagI CCTNNNNNAGG 1 cut(s) 716
XapI RAATTY 1 cut(s) 650
XceI RCATGY 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.