Prupe.2G255500_v2.0.a1

Belongs to the eukaryotic ribosomal protein eS4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0001275
Physical Location & Seq
Forward (+)
26787775 .. 26790164
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G255500.1

Sequence Viewer

Length: 795 bp
ATGGCAAGAGGGTTGAAGAAGCATTTAAAGAGGCTCAATGCCCCGAAGCATTGGATGCTTGACAAACTTGGCGGTGCCTTTGCGCCCAAGCCTTCATCTGGGCCTCACAAGTCCAGGGAATGCCTTCCCTTGGTCATTATCTTACGAAACAGATTGAAATATGCTCTCACTTACCGTGAGGTCATTTCCATTTTGATGCAACGACATGTTCTGGTTGATGGGAAGGTTAGGACTGACAAGACATATCCTTCGGGTTTCATGGATGTTATTTCAATCCCCAAAACAAATGAGAATTTCCGTCTCCTTTATGACACAAAGGGTCGGTTCCGTCTCCACTCGATCAGGGATGAAGAGGCGAAGTTTAAACTTTGCAAAGTCCGGTCAGTGCAGTTTGGGCAAAAGGGTATCCCGTACATCAACACCTACGATGGGCGAACCATTCGCTACCCTGACCCTCTCATCAAGGCCAACGACACCATTAAGCTTGACCTAGAGAGCAACAAGATCACTGACTTCATTAAGTTTGATGTTGGGAATGTGGTCATGGTTACAGGTGGAAGGAACAGGGGGCGTGTTGGAGTAATCAAGAACAGGGAGAAACACAAGGGAAGTTTTGAGACAATCCATGTTCAGGATGCCACCGGCCATGAATTCGCTACTCGGTTGGCTAATGTGTTCACCATTGGCAAGGGGACGAAGCCATGGGTAAGTCTTCCTAAGGGAAAAGGTATCAAGCTCACTATCATCGAAGAGGCCAAAAAGAGGCAAGCAGCCCAACAAGCATCCACTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
40S_S4_C KOW RS4NT Ribosomal_S4e S4

Protein Analysis

265

Amino Acids

29.94

Weight (kDa)

10.25

Isoelectric Point (pI)

23.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AciI CCGC 1 cut(s) 72
AcoI YGGCCR 1 cut(s) 643
AcsI RAATTY 2 cut(s) 292, 650
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 5 cut(s) 98, 130, 429, 631, 762
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 3 cut(s) 16, 157, 273
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 2 cut(s) 484, 736
AluI AGCT 2 cut(s) 484, 736
Alw26I GTCTC 3 cut(s) 305, 335, 611
AoxI GGCC 4 cut(s) 101, 465, 643, 753
ApeKI GCWGC 1 cut(s) 770
ApoI RAATTY 2 cut(s) 292, 650
ArsI GACNNNNNNTTYG 2 cut(s) 232, 264
Asp700I GAANNNNTTC 1 cut(s) 123
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 670
AxyI CCTNAGG 1 cut(s) 717
BanI GGYRCC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 704
BbvI GCAGC 1 cut(s) 782
BccI CCATC 2 cut(s) 212, 422
BciT130I CCWGG 1 cut(s) 115
BciVI GTATCC 1 cut(s) 416
BcoDI GTCTC 3 cut(s) 305, 335, 611
BfaI CTAG 1 cut(s) 491
BfuI GTATCC 1 cut(s) 416
BisI GCNGC 1 cut(s) 771
BlsI GCNGC 1 cut(s) 772
Bme1390I CCNGG 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 2 cut(s) 76, 326
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 4 cut(s) 45, 186, 625, 791
BpiI GAAGAC 1 cut(s) 704
BsaJI CCNNGG 3 cut(s) 114, 129, 701
BsaWI WCCGGW 1 cut(s) 378
Bsc4I CCNNNNNNNGG 5 cut(s) 98, 130, 429, 631, 762
Bse118I RCCGGY 1 cut(s) 641
Bse21I CCTNAGG 1 cut(s) 717
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 3 cut(s) 114, 129, 701
BseGI GGATG 5 cut(s) 60, 268, 352, 640, 782
BseLI CCNNNNNNNGG 5 cut(s) 98, 130, 429, 631, 762
BseXI GCAGC 1 cut(s) 782
BsgI GTGCAG 1 cut(s) 407
BshFI GGCC 4 cut(s) 103, 467, 645, 755
BshNI GGYRCC 1 cut(s) 74
BsiSI CCGG 2 cut(s) 379, 642
BslFI GGGAC 1 cut(s) 706
BslI CCNNNNNNNGG 5 cut(s) 98, 130, 429, 631, 762
BsmAI GTCTC 3 cut(s) 305, 335, 611
BsmBI CGTCTC 2 cut(s) 305, 335
BsmFI GGGAC 1 cut(s) 706
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 4 cut(s) 103, 467, 645, 755
Bsp143I GATC 2 cut(s) 339, 504
Bsp19I CCATGG 1 cut(s) 701
BspACI CCGC 1 cut(s) 72
BspANI GGCC 4 cut(s) 103, 467, 645, 755
BspLI GGNNCC 2 cut(s) 76, 326
BspT107I GGYRCC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 641
BssAI RCCGGY 1 cut(s) 641
BssECI CCNNGG 3 cut(s) 114, 129, 701
BssMI GATC 2 cut(s) 339, 504
BssT1I CCWWGG 2 cut(s) 129, 701
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 2 cut(s) 345, 744
BstAPI GCANNNNNTGC 2 cut(s) 55, 788
BstC8I GCNNGC 1 cut(s) 768
BstDEI CTNAG 1 cut(s) 717
BstDSI CCRYGG 1 cut(s) 701
BstF5I GGATG 5 cut(s) 60, 268, 352, 640, 782
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 2 cut(s) 342, 507
BstMAI GTCTC 3 cut(s) 305, 335, 611
BstMBI GATC 2 cut(s) 339, 504
BstMWI GCNNNNNNNGC 4 cut(s) 55, 394, 779, 788
BstNI CCWGG 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 782
BstV2I GAAGAC 1 cut(s) 704
Bsu36I CCTNAGG 1 cut(s) 717
BsuI GTATCC 1 cut(s) 416
BsuRI GGCC 4 cut(s) 103, 467, 645, 755
BtgI CCRYGG 1 cut(s) 701
BtsCI GGATG 5 cut(s) 60, 268, 352, 640, 782
BtsI GCAGTG 1 cut(s) 786
BtsIMutI CAGTG 3 cut(s) 390, 507, 786
Cac8I GCNNGC 1 cut(s) 768
CfoI GCGC 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 641
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 412
CviAII CATG 6 cut(s) 206, 259, 544, 626, 647, 702
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 1 cut(s) 717
DpnI GATC 2 cut(s) 341, 506
DpnII GATC 2 cut(s) 339, 504
DraI TTTAAA 2 cut(s) 27, 364
EaeI YGGCCR 1 cut(s) 643
Eam1104I CTCTTC 2 cut(s) 345, 744
EarI CTCTTC 2 cut(s) 345, 744
Eco130I CCWWGG 2 cut(s) 129, 701
Eco81I CCTNAGG 1 cut(s) 717
EcoRI GAATTC 1 cut(s) 650
EcoRII CCWGG 1 cut(s) 113
EcoT14I CCWWGG 2 cut(s) 129, 701
ErhI CCWWGG 2 cut(s) 129, 701
Esp3I CGTCTC 2 cut(s) 305, 335
FaeI CATG 6 cut(s) 209, 262, 547, 629, 650, 705
FaiI YATR 9 cut(s) 162, 207, 244, 260, 309, 545, 627, 648, 703
FaqI GGGAC 1 cut(s) 706
FatI CATG 6 cut(s) 205, 258, 543, 625, 646, 701
Fnu4HI GCNGC 1 cut(s) 771
FokI GGATG 5 cut(s) 67, 275, 359, 647, 769
Fsp4HI GCNGC 1 cut(s) 771
FspBI CTAG 1 cut(s) 491
GlaI GCGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 771
HaeIII GGCC 4 cut(s) 103, 467, 645, 755
HapII CCGG 2 cut(s) 379, 642
HhaI GCGC 1 cut(s) 85
Hin1II CATG 6 cut(s) 209, 262, 547, 629, 650, 705
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 482
HpaII CCGG 2 cut(s) 379, 642
HphI GGTGA 1 cut(s) 670
Hpy166II GTNNAC 1 cut(s) 678
Hpy188III TCNNGA 2 cut(s) 586, 632
Hpy8I GTNNAC 1 cut(s) 678
HpyAV CCTTC 5 cut(s) 102, 134, 217, 258, 552
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 3 cut(s) 199, 372, 388
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 394, 779, 788
HpyF3I CTNAG 1 cut(s) 717
Hsp92II CATG 6 cut(s) 209, 262, 547, 629, 650, 705
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 2 cut(s) 339, 504
Lsp1109I GCAGC 1 cut(s) 782
LweI GCATC 4 cut(s) 45, 186, 625, 791
MaeI CTAG 1 cut(s) 491
MaeIII GTNAC 1 cut(s) 547
MalI GATC 2 cut(s) 341, 506
MboI GATC 2 cut(s) 339, 504
MboII GAAGA 4 cut(s) 28, 362, 704, 761
MluCI AATT 2 cut(s) 292, 650
MmeI TCCRAC 1 cut(s) 556
MnlI CCTC 7 cut(s) 24, 114, 172, 346, 465, 745, 756
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 4 cut(s) 26, 363, 480, 519
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 2 cut(s) 379, 642
MspR9I CCNGG 1 cut(s) 115
MssI GTTTAAAC 1 cut(s) 364
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 4 cut(s) 55, 394, 779, 788
NcoI CCATGG 1 cut(s) 701
NdeII GATC 2 cut(s) 339, 504
NlaIII CATG 6 cut(s) 209, 262, 547, 629, 650, 705
NlaIV GGNNCC 2 cut(s) 76, 326
NspI RCATGY 1 cut(s) 209
PciI ACATGT 1 cut(s) 205
PctI GAATGC 1 cut(s) 125
PdmI GAANNNNTTC 1 cut(s) 123
PkrI GCNGC 1 cut(s) 772
PmeI GTTTAAAC 1 cut(s) 364
PscI ACATGT 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 76, 326
PspPI GGNCC 1 cut(s) 101
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 4 cut(s) 26, 363, 480, 519
SatI GCNGC 1 cut(s) 771
Sau3AI GATC 2 cut(s) 339, 504
Sau96I GGNCC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 115
SetI ASST 8 cut(s) 183, 228, 425, 486, 492, 556, 730, 738
SfaNI GCATC 4 cut(s) 45, 186, 625, 791
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 2 cut(s) 292, 650
SsiI CCGC 1 cut(s) 72
SspMI CTAG 1 cut(s) 491
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 2 cut(s) 129, 701
TaaI ACNGT 1 cut(s) 176
TaqI TCGA 2 cut(s) 338, 747
TasI AATT 2 cut(s) 292, 650
Tru1I TTAA 4 cut(s) 26, 363, 480, 519
Tru9I TTAA 4 cut(s) 26, 363, 480, 519
TscAI CASTG 3 cut(s) 390, 514, 793
TseI GCWGC 1 cut(s) 770
TspDTI ATGAA 5 cut(s) 84, 247, 363, 505, 663
TspGWI ACGGA 2 cut(s) 287, 317
TspRI CASTG 3 cut(s) 390, 514, 793
XapI RAATTY 2 cut(s) 292, 650
XceI RCATGY 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.