Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000233.1

Orthogroup ID

OG0001275

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1413

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000233.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

tatgctttgacataccgtgaggttattgccattttgatgcaacgtcatgttatggttgatgggaaagttaggactgataagacttatccttctggtttcatggatgttgtctcaatccccaagacaaatgagaatttccgtctcctttatgacaccaaaggacggttccgtctgcattcaatcagggatgaagaggcaaagttcaaactctgcaaggtccgttctgtgcagttcggccaaaagaacatcccttacattaatacctatgatggaagaacaattcgttaccctgaccctctcatcaaggcaaatgacaccatcaagctggatttggagaccaacaagatcgttgactttatcaagtttgatgttggtaatgttgtcatggtgacaggtggtaggaacagagggcgagttggagtaatcaagaacagggagaagcataagggaagctttgagactatccatgtccaggacgccactggacatgaatttgcaacccgtttggcaaatgtgttcacgattggcaaggggaccaagccatgggtaagccttcccaagggtaagggtattaagcttaccatcattgaggaggccaagaagaggcaagcagcccaagccacagctgctgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_S4_C KOW RS4NT Ribosomal_S4e S4

Protein Analysis

211

Amino Acids

23.93

Weight (kDa)

9.97

Isoelectric Point (pI)

13.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17360 AT2G17360 AT5G07090 AT5G07090 AT5G07090 AT5G58420
fragaria_vesca	FvH4_3g13310 FvH4_3g39480 FvH4_3g39480 FvH4_7g25090 FvH4_7g25090
malus_domestica	MD03G1060900.v1.1 MD05G1242900.v1.1 MD10G1225000.v1.1 MD11G1063600.v1.1
prunus_persica	Prupe.2G255500_v2.0.a1 Prupe.4G120500_v2.0.a1 Prupe.6G051000_v2.0.a1 Prupe.6G051000_v2.0.a1 Prupe.6G051000_v2.0.a1
pyrus_communis	pycom05g21950 pycom07g20470 pycom10g18880 pycom11g05360
rosa_chinensis	RchiOBHm_Chr1g0370941 RchiOBHm_Chr5g0021781 RchiOBHm_Chr5g0071221
rosa_laevigata	RLG00000026997 RLG00000032627 RLG00000036192
rosa_multiflora	Rmu_sc0001018.1_g000004 Rmu_sc0005531.1_g000001 Rmu_sc0006928.1_g000028 Rmu_sc0022073.1_g000003 Rmu_ssc0000233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009920 Rroxscaffold_1G00056930 Rroxscaffold_4G00286110
rosa_rugosa	Rorug01G0360300 Rorug05G0069500 Rorug05G0410600.1
rosa_samantha	Rh1AG370400 Rh1BG334100 Rh1CG347400 Rh1DG365300 Rh4AG270900 Rh5AG158000 Rh5BG157500 Rh5CG171700 Rh5CG509500 Rh5DG157800 Rh5DG496400
rosa_wichuraiana	Rw1G032600 Rw5G014070 Rw5G043340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	168
AccB7I	CCANNNNNTGG	1 cut(s)	543
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	133, 491
AcyI	GRCGYC	1 cut(s)	477
AfiI	CCNNNNNNNGG	5 cut(s)	162, 472, 543, 559, 603
AgsI	TTSAA	2 cut(s)	180, 205
AjnI	CCWGG	1 cut(s)	471
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	4 cut(s)	325, 453, 577, 626
AluI	AGCT	4 cut(s)	325, 453, 577, 626
Alw26I	GTCTC	4 cut(s)	115, 146, 329, 452
AlwNI	CAGNNNCTG	1 cut(s)	629
AoxI	GGCC	2 cut(s)	235, 594
ApeKI	GCWGC	3 cut(s)	611, 626, 629
ApoI	RAATTY	2 cut(s)	133, 491
AseI	ATTAAT	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	217, 534
AsuHPI	GGTGA	1 cut(s)	400
AvaII	GGWCC	2 cut(s)	217, 534
BbvI	GCAGC	3 cut(s)	613, 616, 623
BccI	CCATC	4 cut(s)	53, 263, 326, 590
BciT130I	CCWGG	1 cut(s)	473
BcoDI	GTCTC	4 cut(s)	115, 146, 329, 452
BisI	GCNGC	3 cut(s)	612, 627, 630
BlsI	GCNGC	3 cut(s)	613, 628, 631
Bme1390I	CCNGG	1 cut(s)	473
Bme18I	GGWCC	2 cut(s)	217, 534
BmgT120I	GGNCC	2 cut(s)	217, 534
BmiI	GGNNCC	2 cut(s)	167, 535
BmrFI	CCNGG	1 cut(s)	473
BmsI	GCATC	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	477
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	542, 558
Bsc4I	CCNNNNNNNGG	5 cut(s)	162, 472, 543, 559, 603
Bse1I	ACTGG	1 cut(s)	487
BseBI	CCWGG	1 cut(s)	473
BseDI	CCNNGG	2 cut(s)	542, 558
BseGI	GGATG	3 cut(s)	109, 193, 246
BseLI	CCNNNNNNNGG	5 cut(s)	162, 472, 543, 559, 603
BseNI	ACTGG	1 cut(s)	487
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	3 cut(s)	613, 616, 623
BsgI	GTGCAG	1 cut(s)	248
BshFI	GGCC	2 cut(s)	237, 596
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	5 cut(s)	162, 472, 543, 559, 603
BsmAI	GTCTC	4 cut(s)	115, 146, 329, 452
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	547
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	237, 596
Bso31I	GGTCTC	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	345
Bsp19I	CCATGG	1 cut(s)	542
BspANI	GGCC	2 cut(s)	237, 596
BspLI	GGNNCC	2 cut(s)	167, 535
BspTNI	GGTCTC	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	2 cut(s)	542, 558
BssMI	GATC	1 cut(s)	345
BssNI	GRCGYC	1 cut(s)	477
BssT1I	CCWWGG	2 cut(s)	542, 558
Bst2UI	CCWGG	1 cut(s)	473
Bst4CI	ACNGT	2 cut(s)	17, 165
Bst6I	CTCTTC	2 cut(s)	186, 596
BstACI	GRCGYC	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	1 cut(s)	633
BstDSI	CCRYGG	1 cut(s)	542
BstENI	CCTNNNNNAGG	1 cut(s)	557
BstF5I	GGATG	3 cut(s)	109, 193, 246
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	4 cut(s)	115, 146, 329, 452
BstMBI	GATC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	2 cut(s)	617, 626
BstNI	CCWGG	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	471
BstV1I	GCAGC	3 cut(s)	613, 616, 623
BstXI	CCANNNNNNTGG	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	237, 596
BtgI	CCRYGG	1 cut(s)	542
BtsCI	GGATG	3 cut(s)	109, 193, 246
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	609
CaiI	CAGNNNCTG	1 cut(s)	629
Cfr13I	GGNCC	2 cut(s)	217, 534
CseI	GACGC	1 cut(s)	485
CviAII	CATG	6 cut(s)	47, 100, 385, 467, 488, 543
DdeI	CTNAG	1 cut(s)	633
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
DrdI	GACNNNNNNGTC	1 cut(s)	168
DseDI	GACNNNNNNGTC	1 cut(s)	168
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	186, 596
EarI	CTCTTC	2 cut(s)	186, 596
Eco130I	CCWWGG	2 cut(s)	542, 558
Eco31I	GGTCTC	1 cut(s)	329
Eco47I	GGWCC	2 cut(s)	217, 534
EcoNI	CCTNNNNNAGG	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	471
EcoT14I	CCWWGG	2 cut(s)	542, 558
ErhI	CCWWGG	2 cut(s)	542, 558
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	6 cut(s)	50, 103, 388, 470, 491, 546
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	6 cut(s)	46, 99, 384, 466, 487, 542
Fnu4HI	GCNGC	3 cut(s)	612, 627, 630
FokI	GGATG	3 cut(s)	116, 200, 233
Fsp4HI	GCNGC	3 cut(s)	612, 627, 630
GluI	GCNGC	3 cut(s)	612, 627, 630
HaeIII	GGCC	2 cut(s)	237, 596
HgaI	GACGC	1 cut(s)	485
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	6 cut(s)	50, 103, 388, 470, 491, 546
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	2 cut(s)	451, 575
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	2 cut(s)	352, 519
Hpy188III	TCNNGA	2 cut(s)	427, 520
Hpy8I	GTNNAC	2 cut(s)	352, 519
HpyAV	CCTTC	2 cut(s)	99, 563
HpyCH4III	ACNGT	2 cut(s)	17, 165
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	5 cut(s)	40, 175, 213, 229, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	617, 626
HpyF3I	CTNAG	1 cut(s)	633
HpySE526I	ACGT	1 cut(s)	43
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	6 cut(s)	50, 103, 388, 470, 491, 546
Kzo9I	GATC	1 cut(s)	345
LpnPI	CCDG	9 cut(s)	78, 169, 303, 311, 378, 418, 458, 468, 485
Lsp1109I	GCAGC	3 cut(s)	613, 616, 623
LweI	GCATC	1 cut(s)	27
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	2 cut(s)	284, 388
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	3 cut(s)	203, 285, 613
MluCI	AATT	3 cut(s)	133, 279, 491
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	7 cut(s)	13, 187, 306, 401, 583, 586, 597
MseI	TTAA	2 cut(s)	258, 573
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	626
MspR9I	CCNGG	1 cut(s)	473
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	473
MwoI	GCNNNNNNNGC	2 cut(s)	617, 626
NcoI	CCATGG	1 cut(s)	542
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	6 cut(s)	50, 103, 388, 470, 491, 546
NlaIV	GGNNCC	2 cut(s)	167, 535
NmuCI	GTSAC	1 cut(s)	388
PctI	GAATGC	1 cut(s)	175
PflMI	CCANNNNNTGG	1 cut(s)	543
PfoI	TCCNGGA	1 cut(s)	471
PkrI	GCNGC	3 cut(s)	613, 628, 631
PshBI	ATTAAT	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	471
PspN4I	GGNNCC	2 cut(s)	167, 535
PspPI	GGNCC	2 cut(s)	217, 534
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
PstNI	CAGNNNCTG	1 cut(s)	629
PvuII	CAGCTG	1 cut(s)	626
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	258, 573
SatI	GCNGC	3 cut(s)	612, 627, 630
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	2 cut(s)	217, 534
ScrFI	CCNGG	1 cut(s)	473
SetI	ASST	9 cut(s)	24, 46, 219, 266, 327, 397, 455, 579, 628
SfaNI	GCATC	1 cut(s)	27
SinI	GGWCC	2 cut(s)	217, 534
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	133, 279, 491
StyD4I	CCNGG	1 cut(s)	471
StyI	CCWWGG	2 cut(s)	542, 558
TaaI	ACNGT	2 cut(s)	17, 165
TaiI	ACGT	1 cut(s)	46
TasI	AATT	3 cut(s)	133, 279, 491
Tru1I	TTAA	2 cut(s)	258, 573
Tru9I	TTAA	2 cut(s)	258, 573
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	3 cut(s)	611, 626, 629
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	3 cut(s)	88, 204, 504
TspGWI	ACGGA	3 cut(s)	128, 158, 209
TspRI	CASTG	1 cut(s)	487
Van91I	CCANNNNNTGG	1 cut(s)	543
VpaK11BI	GGWCC	2 cut(s)	217, 534
VspI	ATTAAT	1 cut(s)	258
XagI	CCTNNNNNAGG	1 cut(s)	557
XapI	RAATTY	2 cut(s)	133, 491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.