Rh5BG157500

Belongs to the eukaryotic ribosomal protein eS4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001275
Physical Location & Seq
Reverse (-)
16058903 .. 16061416
2514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG157500.1

Sequence Viewer

Length: 600 bp
ATGCAACGTCATGTTATGGTCGATGGGAAAGTTAGGACTGATAAGACTTATCCTTCTGGTTTCATGGATGTTGTCTCAATCCCCAAGACAAATGAGAATTTCCGTCTCCTTTATGACACCAAAGGACGGTTCCGTCTGCATTCAATCAGGGATGAAGAGGCAAAGTTCAAACTCTGCAAGGTCCGTTCTGTGCAGTTCGGCCAAAAGAACATCCCTTACATTAATACCTATGATGGAAGAACAATTCGTTACCCTGACCCTCTCATCAAGGCAAATGACACCATCAAGCTGGATTTGGAGACCAACAAGATCGTCGACTTTATCAAGTTCGATGTTGGTAATGTTGTCATGGTGACAGGTGGTAGGAACAGAGGGCGAGTTGGAGTAATCAAGAACAGGGAGAAGCATAAGGGAAGCTTTGAGACTATCCATGTCCAGGACGCCACTGGACATGAATTTGCAACCCGTTTGGCGAATGTGTTCACGATTGGTAAGGGGACCAAGCCATGGGTAAGCCTTCCCAAGGGTAAGGGTATTAAGCTTACCATCATTGAGGAGGCCAAGAAGAGGCAAGCAGCCCAAGCCACAGCTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
40S_S4_C KOW RS4NT Ribosomal_S4e S4

Protein Analysis

199

Amino Acids

22.52

Weight (kDa)

10.03

Isoelectric Point (pI)

12.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S4e PF00900 30 - 104 2.5e-34 Ribosomal family S4e
KOW PF00467 112 - 145 1.2e-06 KOW motif
40S_S4_C PF16121 147 - 193 4.3e-26 40S ribosomal protein S4 C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 132
AccB7I CCANNNNNTGG 1 cut(s) 507
AccI GTMKAC 1 cut(s) 315
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 2 cut(s) 97, 455
AcyI GRCGYC 1 cut(s) 441
AfiI CCNNNNNNNGG 5 cut(s) 126, 436, 507, 523, 567
AgsI TTSAA 2 cut(s) 144, 169
AjnI CCWGG 1 cut(s) 435
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 4 cut(s) 289, 417, 541, 590
AluI AGCT 4 cut(s) 289, 417, 541, 590
Alw26I GTCTC 4 cut(s) 79, 110, 293, 416
AlwNI CAGNNNCTG 1 cut(s) 593
AoxI GGCC 2 cut(s) 199, 558
ApeKI GCWGC 3 cut(s) 575, 590, 593
ApoI RAATTY 2 cut(s) 97, 455
AseI ATTAAT 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 479
AspS9I GGNCC 2 cut(s) 181, 498
AsuHPI GGTGA 1 cut(s) 364
AvaII GGWCC 2 cut(s) 181, 498
BbvI GCAGC 3 cut(s) 577, 580, 587
BccI CCATC 4 cut(s) 17, 227, 290, 554
BciT130I CCWGG 1 cut(s) 437
BcoDI GTCTC 4 cut(s) 79, 110, 293, 416
BisI GCNGC 3 cut(s) 576, 591, 594
BlsI GCNGC 3 cut(s) 577, 592, 595
Bme1390I CCNGG 1 cut(s) 437
Bme18I GGWCC 2 cut(s) 181, 498
BmgT120I GGNCC 2 cut(s) 181, 498
BmiI GGNNCC 2 cut(s) 131, 499
BmrFI CCNGG 1 cut(s) 437
BsaHI GRCGYC 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 506, 522
Bsc4I CCNNNNNNNGG 5 cut(s) 126, 436, 507, 523, 567
Bse1I ACTGG 1 cut(s) 451
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 2 cut(s) 506, 522
BseGI GGATG 3 cut(s) 73, 157, 210
BseLI CCNNNNNNNGG 5 cut(s) 126, 436, 507, 523, 567
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 3 cut(s) 577, 580, 587
BsgI GTGCAG 1 cut(s) 212
BshFI GGCC 2 cut(s) 201, 560
BslFI GGGAC 1 cut(s) 511
BslI CCNNNNNNNGG 5 cut(s) 126, 436, 507, 523, 567
BsmAI GTCTC 4 cut(s) 79, 110, 293, 416
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 511
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 2 cut(s) 201, 560
Bso31I GGTCTC 1 cut(s) 293
Bsp143I GATC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 506
BspANI GGCC 2 cut(s) 201, 560
BspLI GGNNCC 2 cut(s) 131, 499
BspTNI GGTCTC 1 cut(s) 293
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 2 cut(s) 506, 522
BssMI GATC 1 cut(s) 309
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 2 cut(s) 506, 522
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 1 cut(s) 129
Bst6I CTCTTC 2 cut(s) 150, 560
BstACI GRCGYC 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 1 cut(s) 597
BstDSI CCRYGG 1 cut(s) 506
BstENI CCTNNNNNAGG 1 cut(s) 521
BstF5I GGATG 3 cut(s) 73, 157, 210
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 4 cut(s) 79, 110, 293, 416
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 2 cut(s) 581, 590
BstNI CCWGG 1 cut(s) 437
BstSCI CCNGG 1 cut(s) 435
BstV1I GCAGC 3 cut(s) 577, 580, 587
BstXI CCANNNNNNTGG 1 cut(s) 289
BsuRI GGCC 2 cut(s) 201, 560
BtgI CCRYGG 1 cut(s) 506
BtsCI GGATG 3 cut(s) 73, 157, 210
BtsIMutI CAGTG 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 573
CaiI CAGNNNCTG 1 cut(s) 593
Cfr13I GGNCC 2 cut(s) 181, 498
CseI GACGC 1 cut(s) 449
CviAII CATG 6 cut(s) 11, 64, 349, 431, 452, 507
DdeI CTNAG 1 cut(s) 597
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
DrdI GACNNNNNNGTC 1 cut(s) 132
DseDI GACNNNNNNGTC 1 cut(s) 132
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 150, 560
EarI CTCTTC 2 cut(s) 150, 560
Eco130I CCWWGG 2 cut(s) 506, 522
Eco31I GGTCTC 1 cut(s) 293
Eco47I GGWCC 2 cut(s) 181, 498
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 2 cut(s) 506, 522
ErhI CCWWGG 2 cut(s) 506, 522
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 6 cut(s) 14, 67, 352, 434, 455, 510
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 1 cut(s) 511
FatI CATG 6 cut(s) 10, 63, 348, 430, 451, 506
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 3 cut(s) 576, 591, 594
FokI GGATG 3 cut(s) 80, 164, 197
Fsp4HI GCNGC 3 cut(s) 576, 591, 594
GluI GCNGC 3 cut(s) 576, 591, 594
HaeIII GGCC 2 cut(s) 201, 560
HgaI GACGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 6 cut(s) 14, 67, 352, 434, 455, 510
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 2 cut(s) 415, 539
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 2 cut(s) 316, 483
Hpy188III TCNNGA 2 cut(s) 391, 484
Hpy8I GTNNAC 2 cut(s) 316, 483
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 2 cut(s) 63, 527
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 5 cut(s) 4, 139, 177, 193, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 581, 590
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 1 cut(s) 7
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 6 cut(s) 14, 67, 352, 434, 455, 510
Kzo9I GATC 1 cut(s) 309
LpnPI CCDG 9 cut(s) 42, 133, 267, 275, 342, 382, 422, 432, 449
Lsp1109I GCAGC 3 cut(s) 577, 580, 587
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 2 cut(s) 248, 352
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MboII GAAGA 3 cut(s) 167, 249, 577
MluCI AATT 3 cut(s) 97, 243, 455
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 6 cut(s) 151, 270, 365, 547, 550, 561
MroXI GAANNNNTTC 1 cut(s) 479
MseI TTAA 2 cut(s) 222, 537
MspA1I CMGCKG 1 cut(s) 590
MspR9I CCNGG 1 cut(s) 437
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 437
MwoI GCNNNNNNNGC 2 cut(s) 581, 590
NcoI CCATGG 1 cut(s) 506
NdeII GATC 1 cut(s) 309
NlaIII CATG 6 cut(s) 14, 67, 352, 434, 455, 510
NlaIV GGNNCC 2 cut(s) 131, 499
NmuCI GTSAC 1 cut(s) 352
PctI GAATGC 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 479
PflMI CCANNNNNTGG 1 cut(s) 507
PfoI TCCNGGA 1 cut(s) 435
PkrI GCNGC 3 cut(s) 577, 592, 595
PshBI ATTAAT 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 435
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 2 cut(s) 131, 499
PspPI GGNCC 2 cut(s) 181, 498
PsrI GAACNNNNNNTAC 2 cut(s) 200, 232
PstNI CAGNNNCTG 1 cut(s) 593
PvuII CAGCTG 1 cut(s) 590
SalI GTCGAC 1 cut(s) 314
SaqAI TTAA 2 cut(s) 222, 537
SatI GCNGC 3 cut(s) 576, 591, 594
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 2 cut(s) 181, 498
ScrFI CCNGG 1 cut(s) 437
SetI ASST 8 cut(s) 10, 183, 230, 291, 361, 419, 543, 592
SinI GGWCC 2 cut(s) 181, 498
Sse9I AATT 3 cut(s) 97, 243, 455
StyD4I CCNGG 1 cut(s) 435
StyI CCWWGG 2 cut(s) 506, 522
TaaI ACNGT 1 cut(s) 129
TaiI ACGT 1 cut(s) 10
TaqI TCGA 3 cut(s) 21, 315, 330
TasI AATT 3 cut(s) 97, 243, 455
Tru1I TTAA 2 cut(s) 222, 537
Tru9I TTAA 2 cut(s) 222, 537
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 3 cut(s) 575, 590, 593
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 52, 168, 468
TspGWI ACGGA 3 cut(s) 92, 122, 173
TspRI CASTG 1 cut(s) 451
Van91I CCANNNNNTGG 1 cut(s) 507
VpaK11BI GGWCC 2 cut(s) 181, 498
VspI ATTAAT 1 cut(s) 222
XagI CCTNNNNNAGG 1 cut(s) 521
XapI RAATTY 2 cut(s) 97, 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XmiI GTMKAC 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.