Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001275

Physical Location & Seq

Genomic Coordinates Reverse (-)

5512503 .. 5514612

Gene Structure 2110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1063600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCCAGAGGACTGAAGAAGCATTTGAAGAGGCTCAATGCCCCAAAGCATTGGATGCTCGACAAGCTTGGTGGTGCTTTTGCCCCCAAGCCCTCATCTGGGCCCCACAAATCCAGGGAGTGCCTTCCCCTGGTTCTTATCCTGAGGAACAGGTTGAAGTATGCACTCACATACCGTGAGGTTGTTTCGATTCTCATGCAGCGCCATATTTTGGTTGATGGAAAGGTCAGGACCGACAAGACTTACCCTTCTGGCTTCATGGATGTTGTTTCAATCCCGAAAACAAACGAGAATTTTCGTCTGCTTTTTGACACAAAGGGTCGGTTTAGGCTTCACTCCATTAGAGATGAGGAGGCAAAGTTCAAGCTCTGCAAGGTTCGGTCGGTGCAGTTTGGGCAGAAGGGCATCCCCTATCTTAACACTTTTGATGGCCGAACCATTCGCTACCCTGACCCGCTGATCAAGGCCAATGACACTATTAAGCTGGACGTAGAGACCAGCAAGATCACTGACTTCATTAAGTTTGATGTTGGTAATGTTGTCATGGTGACTGGCGGTAGGAATAGGGGACGTGTTGGAGTCATTAAGAACAGGGAGAAGCATAAGGGAAGCTTTGAGACCATCCACGTGCAGGATGCCCTCGGCCATGAGTTTGCAACCCGTCTTGGCAATGTGTTCACCATCGGCAAGGGTACCAAGCCTTGGGTTTCTCTTCCCAAGGGCAAGGGCATCAAGCTAAGCATCATTGAAGAGGCAAAGAAGCGACAAGCGTCCCAAACAGCTGCTACGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_S4_C KOW RS4NT Ribosomal_S4e S4

Protein Analysis

265

Amino Acids

29.82

Weight (kDa)

10.32

Isoelectric Point (pI)

23.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RS4NT	PF08071	3 - 39	2.3e-18	RS4NT (NUC023) domain
Ribosomal_S4e	PF00900	95 - 169	4.7e-34	Ribosomal family S4e
KOW	PF00467	177 - 210	1.9e-06	KOW motif
40S_S4_C	PF16121	212 - 258	1.8e-25	40S ribosomal protein S4 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17360 AT2G17360 AT5G07090 AT5G07090 AT5G07090 AT5G58420
fragaria_vesca	FvH4_3g13310 FvH4_3g39480 FvH4_3g39480 FvH4_7g25090 FvH4_7g25090
malus_domestica	MD03G1060900.v1.1 MD05G1242900.v1.1 MD10G1225000.v1.1 MD11G1063600.v1.1
prunus_persica	Prupe.2G255500_v2.0.a1 Prupe.4G120500_v2.0.a1 Prupe.6G051000_v2.0.a1 Prupe.6G051000_v2.0.a1 Prupe.6G051000_v2.0.a1
pyrus_communis	pycom05g21950 pycom07g20470 pycom10g18880 pycom11g05360
rosa_chinensis	RchiOBHm_Chr1g0370941 RchiOBHm_Chr5g0021781 RchiOBHm_Chr5g0071221
rosa_laevigata	RLG00000026997 RLG00000032627 RLG00000036192
rosa_multiflora	Rmu_sc0001018.1_g000004 Rmu_sc0005531.1_g000001 Rmu_sc0006928.1_g000028 Rmu_sc0022073.1_g000003 Rmu_ssc0000233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009920 Rroxscaffold_1G00056930 Rroxscaffold_4G00286110
rosa_rugosa	Rorug01G0360300 Rorug05G0069500 Rorug05G0410600.1
rosa_samantha	Rh1AG370400 Rh1BG334100 Rh1CG347400 Rh1DG365300 Rh4AG270900 Rh5AG158000 Rh5BG157500 Rh5CG171700 Rh5CG509500 Rh5DG157800 Rh5DG496400
rosa_wichuraiana	Rw1G032600 Rw5G014070 Rw5G043340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	692
AccB1I	GGYRCC	1 cut(s)	692
AccB7I	CCANNNNNTGG	2 cut(s)	211, 702
AciI	CCGC	2 cut(s)	455, 555
AcoI	YGGCCR	3 cut(s)	3, 430, 643
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	35
AcvI	CACGTG	1 cut(s)	628
AfaI	GTAC	1 cut(s)	694
AfiI	CCNNNNNNNGG	6 cut(s)	98, 99, 130, 211, 631, 702
AflIII	ACRYGT	1 cut(s)	571
AgsI	TTSAA	5 cut(s)	28, 157, 273, 364, 749
AjiI	CACGTC	1 cut(s)	572
AjnI	CCWGG	2 cut(s)	113, 129
AloI	GAACNNNNNNTCC	2 cut(s)	344, 376
AluBI	AGCT	6 cut(s)	67, 367, 484, 612, 736, 782
AluI	AGCT	6 cut(s)	67, 367, 484, 612, 736, 782
Alw26I	GTCTC	2 cut(s)	488, 611
AoxI	GGCC	5 cut(s)	3, 101, 430, 465, 643
ApaI	GGGCCC	1 cut(s)	105
ApeKI	GCWGC	2 cut(s)	199, 782
ApoI	RAATTY	1 cut(s)	292
Asp718I	GGTACC	1 cut(s)	692
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	3 cut(s)	101, 102, 231
AsuHPI	GGTGA	2 cut(s)	559, 670
AvaII	GGWCC	1 cut(s)	231
AxyI	CCTNAGG	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	692
BanII	GRGCYC	1 cut(s)	105
BbrPI	CACGTG	1 cut(s)	628
BbvI	GCAGC	2 cut(s)	211, 769
BccI	CCATC	4 cut(s)	212, 422, 629, 689
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	2 cut(s)	115, 131
BclI	TGATCA	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	488, 611
BfoI	RGCGCY	1 cut(s)	205
BisI	GCNGC	2 cut(s)	200, 783
BlpI	GCTNAGC	1 cut(s)	737
BlsI	GCNGC	2 cut(s)	201, 784
Bme1390I	CCNGG	2 cut(s)	115, 131
Bme18I	GGWCC	1 cut(s)	231
BmgBI	CACGTC	1 cut(s)	572
BmgT120I	GGNCC	3 cut(s)	101, 102, 231
BmiI	GGNNCC	3 cut(s)	103, 104, 694
BmrFI	CCNGG	2 cut(s)	115, 131
BmsI	GCATC	5 cut(s)	45, 414, 625, 738, 750
BoxI	GACNNNNGTC	1 cut(s)	769
Bpu1102I	GCTNAGC	1 cut(s)	737
BsaAI	YACGTR	1 cut(s)	628
BsaI	GGTCTC	2 cut(s)	488, 611
BsaJI	CCNNGG	5 cut(s)	114, 129, 640, 701, 717
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	6 cut(s)	98, 99, 130, 211, 631, 702
Bse1I	ACTGG	1 cut(s)	556
Bse21I	CCTNAGG	1 cut(s)	143
Bse3DI	GCAATG	1 cut(s)	676
BseBI	CCWGG	2 cut(s)	115, 131
BseDI	CCNNGG	5 cut(s)	114, 129, 640, 701, 717
BseGI	GGATG	5 cut(s)	60, 268, 405, 621, 640
BseLI	CCNNNNNNNGG	6 cut(s)	98, 99, 130, 211, 631, 702
BseMI	GCAATG	1 cut(s)	676
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	211, 769
BsgI	GTGCAG	2 cut(s)	407, 650
Bsh1285I	CGRYCG	1 cut(s)	383
BshFI	GGCC	5 cut(s)	5, 103, 432, 467, 645
BshNI	GGYRCC	1 cut(s)	692
BsiEI	CGRYCG	1 cut(s)	383
BslFI	GGGAC	2 cut(s)	582, 757
BslI	CCNNNNNNNGG	6 cut(s)	98, 99, 130, 211, 631, 702
BsmAI	GTCTC	2 cut(s)	488, 611
BsmFI	GGGAC	2 cut(s)	582, 757
BsnI	GGCC	5 cut(s)	5, 103, 432, 467, 645
Bso31I	GGTCTC	2 cut(s)	488, 611
Bsp120I	GGGCCC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	459, 504
Bsp1720I	GCTNAGC	1 cut(s)	737
BspACI	CCGC	2 cut(s)	455, 555
BspANI	GGCC	5 cut(s)	5, 103, 432, 467, 645
BspCNI	CTCAG	1 cut(s)	135
BspLI	GGNNCC	3 cut(s)	103, 104, 694
BspT107I	GGYRCC	1 cut(s)	692
BspTNI	GGTCTC	2 cut(s)	488, 611
BsrDI	GCAATG	1 cut(s)	676
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	5 cut(s)	114, 129, 640, 701, 717
BssMI	GATC	2 cut(s)	459, 504
BssT1I	CCWWGG	2 cut(s)	701, 717
Bst2UI	CCWGG	2 cut(s)	115, 131
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	3 cut(s)	23, 717, 744
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstBAI	YACGTR	1 cut(s)	628
BstDEI	CTNAG	2 cut(s)	143, 737
BstF5I	GGATG	5 cut(s)	60, 268, 405, 621, 640
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	2 cut(s)	462, 507
BstMAI	GTCTC	2 cut(s)	488, 611
BstMBI	GATC	2 cut(s)	459, 504
BstMCI	CGRYCG	1 cut(s)	383
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 64, 394, 788
BstNI	CCWGG	2 cut(s)	115, 131
BstPAI	GACNNNNGTC	1 cut(s)	769
BstSCI	CCNGG	2 cut(s)	113, 129
BstSLI	GKGCMC	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	211, 769
BstXI	CCANNNNNNTGG	1 cut(s)	51
Bsu36I	CCTNAGG	1 cut(s)	143
BsuRI	GGCC	5 cut(s)	5, 103, 432, 467, 645
BtrI	CACGTC	1 cut(s)	572
BtsCI	GGATG	5 cut(s)	60, 268, 405, 621, 640
BtsIMutI	CAGTG	1 cut(s)	507
CfoI	GCGC	1 cut(s)	204
Cfr13I	GGNCC	3 cut(s)	101, 102, 231
CseI	GACGC	1 cut(s)	759
Csp6I	GTAC	1 cut(s)	693
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	4 cut(s)	196, 259, 544, 647
CviQI	GTAC	1 cut(s)	693
DdeI	CTNAG	2 cut(s)	143, 737
DpnI	GATC	2 cut(s)	461, 506
DpnII	GATC	2 cut(s)	459, 504
EaeI	YGGCCR	3 cut(s)	3, 430, 643
Eam1104I	CTCTTC	3 cut(s)	23, 717, 744
EarI	CTCTTC	3 cut(s)	23, 717, 744
Eco130I	CCWWGG	2 cut(s)	701, 717
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	488, 611
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	35
Eco72I	CACGTG	1 cut(s)	628
Eco81I	CCTNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	102
EcoRII	CCWGG	2 cut(s)	113, 129
EcoT14I	CCWWGG	2 cut(s)	701, 717
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	701, 717
FaeI	CATG	4 cut(s)	199, 262, 547, 650
FaiI	YATR	8 cut(s)	162, 172, 197, 207, 260, 545, 603, 648
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	2 cut(s)	582, 757
FatI	CATG	4 cut(s)	195, 258, 543, 646
FauI	CCCGC	1 cut(s)	462
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	200, 783
FokI	GGATG	5 cut(s)	67, 275, 392, 608, 647
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	200, 783
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	2 cut(s)	200, 783
HaeII	RGCGCY	1 cut(s)	205
HaeIII	GGCC	5 cut(s)	5, 103, 432, 467, 645
HgaI	GACGC	1 cut(s)	759
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	4 cut(s)	199, 262, 547, 650
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HindIII	AAGCTT	2 cut(s)	65, 610
HinfI	GANTC	2 cut(s)	190, 579
HphI	GGTGA	2 cut(s)	559, 670
Hpy166II	GTNNAC	1 cut(s)	678
Hpy188III	TCNNGA	3 cut(s)	142, 229, 277
Hpy8I	GTNNAC	1 cut(s)	678
HpyAV	CCTTC	3 cut(s)	134, 258, 394
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	3 cut(s)	489, 571, 627
HpyCH4V	TGCA	6 cut(s)	164, 199, 372, 388, 631, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 64, 394, 788
HpyF3I	CTNAG	2 cut(s)	143, 737
HpySE526I	ACGT	3 cut(s)	489, 571, 627
Hsp92II	CATG	4 cut(s)	199, 262, 547, 650
HspAI	GCGC	1 cut(s)	202
KpnI	GGTACC	1 cut(s)	696
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	2 cut(s)	459, 504
Lsp1109I	GCAGC	2 cut(s)	211, 769
LweI	GCATC	5 cut(s)	45, 414, 625, 738, 750
MaeII	ACGT	3 cut(s)	489, 571, 627
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	2 cut(s)	461, 506
MboI	GATC	2 cut(s)	459, 504
MboII	GAAGA	4 cut(s)	28, 40, 704, 761
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	292
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	588
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	8 cut(s)	24, 103, 138, 172, 343, 346, 650, 745
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	417, 480, 519, 585, 793
MslI	CAYNNNNRTG	1 cut(s)	626
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	457, 782
MspR9I	CCNGG	2 cut(s)	115, 131
MvaI	CCWGG	2 cut(s)	115, 131
MwoI	GCNNNNNNNGC	4 cut(s)	55, 64, 394, 788
NdeII	GATC	2 cut(s)	459, 504
NlaIII	CATG	4 cut(s)	199, 262, 547, 650
NlaIV	GGNNCC	3 cut(s)	103, 104, 694
NmeAIII	GCCGAG	1 cut(s)	621
NmuCI	GTSAC	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	190
PflMI	CCANNNNNTGG	2 cut(s)	211, 702
PkrI	GCNGC	2 cut(s)	201, 784
PleI	GAGTC	1 cut(s)	587
PmaCI	CACGTG	1 cut(s)	628
PmlI	CACGTG	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	587
Ppu21I	YACGTR	1 cut(s)	628
PshAI	GACNNNNGTC	1 cut(s)	769
Psp6I	CCWGG	2 cut(s)	113, 129
PspCI	CACGTG	1 cut(s)	628
PspGI	CCWGG	2 cut(s)	113, 129
PspN4I	GGNNCC	3 cut(s)	103, 104, 694
PspOMI	GGGCCC	1 cut(s)	101
PspPI	GGNCC	3 cut(s)	101, 102, 231
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	1 cut(s)	694
RsaNI	GTAC	1 cut(s)	693
RseI	CAYNNNNRTG	1 cut(s)	626
SaqAI	TTAA	5 cut(s)	417, 480, 519, 585, 793
SatI	GCNGC	2 cut(s)	200, 783
Sau3AI	GATC	2 cut(s)	459, 504
Sau96I	GGNCC	3 cut(s)	101, 102, 231
SchI	GAGTC	1 cut(s)	588
ScrFI	CCNGG	2 cut(s)	115, 131
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	5 cut(s)	45, 414, 625, 738, 750
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	626
Sse9I	AATT	1 cut(s)	292
SsiI	CCGC	2 cut(s)	455, 555
StyD4I	CCNGG	2 cut(s)	113, 129
StyI	CCWWGG	2 cut(s)	701, 717
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	3 cut(s)	492, 574, 630
TaqI	TCGA	2 cut(s)	60, 188
TaqII	GACCGA	2 cut(s)	248, 369
TasI	AATT	1 cut(s)	292
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	5 cut(s)	417, 480, 519, 585, 793
Tru9I	TTAA	5 cut(s)	417, 480, 519, 585, 793
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	2 cut(s)	199, 782
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	2 cut(s)	247, 505
TspRI	CASTG	1 cut(s)	514
Van91I	CCANNNNNTGG	2 cut(s)	211, 702
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.