Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001275

Physical Location & Seq

Genomic Coordinates Forward (+)

23619459 .. 23621094

Gene Structure 1636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCGAGGGGTTTGAAGAAGCATCTGAAGAGGCTTAATGCGCCTAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGCCCCAAAGCCGTCTTCTGGACCACATAAGTCAAGGGAGTGCCTTCCCCTCGTCCTTATCATCAGGAACAGGTTGAAGTATGCTCTTACCTACCGTGAAGTGATTTCAATCTTGATGCAAAGGCATATCCAAGTTGATGGGAAAGTCAGGACGGACAAGACCTACCCTGCTGGTTTCATGGATGTTGTGTCTATCCCCAAGACCAATGAGAACTTCCGTCTTCTCTATGATACCAAGGGACGTTTCCGTCTCCACTCCATCAAGGATGAGGAAGCAAAGTTCAAACTTTGCAAGGTTCGATCTATCCAGTTTGGACAGAAAGGCATTCCTTACCTGAACACTTACGATGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCTAATGACACCATCAAGCTCGACCTTGAGGCCAACAAGATTGTCGAGTTCATCAAGTTTGATGTTGGCAATGTTGTGATGGTTACAGGAGGTAGAAACAGAGGGCGTGTTGGTGTGATTAAAAACCGTGAGAAGCATAAGGGAAGCTTTGAGACAATCCACATCCAAGATTCAACAGGACATGAGTTTGCAACAAGGTTGGGTAATGTGTACACCATTGGCAAAGGAACAAAGCCATGGGTGTCTCTTCCCAAGGGCAAAGGTATCAAGCTGACTATCATCGAGGAGGCCAGGAAGAGGCTTGCTAGTCAACAGGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_S4_C KOW RS4NT Ribosomal_S4e S4

Protein Analysis

262

Amino Acids

29.82

Weight (kDa)

10.22

Isoelectric Point (pI)

23.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RS4NT	PF08071	3 - 39	2.3e-18	RS4NT (NUC023) domain
Ribosomal_S4e	PF00900	95 - 169	2.9e-34	Ribosomal family S4e
KOW	PF00467	177 - 210	1.5e-06	KOW motif
40S_S4_C	PF16121	212 - 258	1.1e-24	40S ribosomal protein S4 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17360 AT2G17360 AT5G07090 AT5G07090 AT5G07090 AT5G58420
fragaria_vesca	FvH4_3g13310 FvH4_3g39480 FvH4_3g39480 FvH4_7g25090 FvH4_7g25090
malus_domestica	MD03G1060900.v1.1 MD05G1242900.v1.1 MD10G1225000.v1.1 MD11G1063600.v1.1
prunus_persica	Prupe.2G255500_v2.0.a1 Prupe.4G120500_v2.0.a1 Prupe.6G051000_v2.0.a1 Prupe.6G051000_v2.0.a1 Prupe.6G051000_v2.0.a1
pyrus_communis	pycom05g21950 pycom07g20470 pycom10g18880 pycom11g05360
rosa_chinensis	RchiOBHm_Chr1g0370941 RchiOBHm_Chr5g0021781 RchiOBHm_Chr5g0071221
rosa_laevigata	RLG00000026997 RLG00000032627 RLG00000036192
rosa_multiflora	Rmu_sc0001018.1_g000004 Rmu_sc0005531.1_g000001 Rmu_sc0006928.1_g000028 Rmu_sc0022073.1_g000003 Rmu_ssc0000233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009920 Rroxscaffold_1G00056930 Rroxscaffold_4G00286110
rosa_rugosa	Rorug01G0360300 Rorug05G0069500 Rorug05G0410600.1
rosa_samantha	Rh1AG370400 Rh1BG334100 Rh1CG347400 Rh1DG365300 Rh4AG270900 Rh5AG158000 Rh5BG157500 Rh5CG171700 Rh5CG509500 Rh5DG157800 Rh5DG496400
rosa_wichuraiana	Rw1G032600 Rw5G014070 Rw5G043340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	327
AccBSI	CCGCTC	1 cut(s)	457
AciI	CCGC	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	1 cut(s)	677
AfiI	CCNNNNNNNGG	2 cut(s)	98, 762
AgsI	TTSAA	5 cut(s)	16, 157, 189, 364, 639
AjnI	CCWGG	1 cut(s)	755
AjuI	GAANNNNNNNTTGG	6 cut(s)	79, 111, 278, 308, 310, 340
AloI	GAACNNNNNNTCC	2 cut(s)	344, 376
AluBI	AGCT	3 cut(s)	484, 612, 736
AluI	AGCT	3 cut(s)	484, 612, 736
Alw26I	GTCTC	3 cut(s)	335, 611, 714
AoxI	GGCC	2 cut(s)	495, 753
ApeKI	GCWGC	1 cut(s)	782
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	101
BbsI	GAAGAC	2 cut(s)	87, 293
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	6 cut(s)	212, 347, 422, 446, 485, 538
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	757
BcoDI	GTCTC	3 cut(s)	335, 611, 714
BfaI	CTAG	1 cut(s)	771
BisI	GCNGC	1 cut(s)	783
BlsI	GCNGC	1 cut(s)	784
Bme1390I	CCNGG	1 cut(s)	757
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	757
BmsI	GCATC	3 cut(s)	31, 45, 186
BpiI	GAAGAC	2 cut(s)	87, 293
Bpu10I	CCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	512
BsaBI	GATNNNNATC	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	315, 701, 717
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 762
Bse1I	ACTGG	1 cut(s)	388
Bse3DI	GCAATG	1 cut(s)	541
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	757
BseDI	CCNNGG	3 cut(s)	315, 701, 717
BseGI	GGATG	5 cut(s)	60, 268, 352, 438, 627
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	2 cut(s)	98, 762
BseMI	GCAATG	1 cut(s)	541
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	764
BseXI	GCAGC	1 cut(s)	769
BshFI	GGCC	2 cut(s)	497, 755
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	2 cut(s)	98, 762
BsmAI	GTCTC	3 cut(s)	335, 611, 714
BsmBI	CGTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	497, 755
Bsp1407I	TGTACA	1 cut(s)	675
Bsp143I	GATC	1 cut(s)	380
Bsp19I	CCATGG	1 cut(s)	701
BspACI	CCGC	1 cut(s)	455
BspANI	GGCC	2 cut(s)	497, 755
BsrBI	CCGCTC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	541
BsrGI	TGTACA	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	3 cut(s)	315, 701, 717
BssMI	GATC	1 cut(s)	380
BssT1I	CCWWGG	3 cut(s)	315, 701, 717
Bst2UI	CCWGG	1 cut(s)	757
Bst4CI	ACNGT	2 cut(s)	176, 593
Bst6I	CTCTTC	3 cut(s)	23, 717, 755
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstAUI	TGTACA	1 cut(s)	675
BstC8I	GCNNGC	1 cut(s)	768
BstDEI	CTNAG	1 cut(s)	45
BstDSI	CCRYGG	1 cut(s)	701
BstF5I	GGATG	5 cut(s)	60, 268, 352, 438, 627
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	1 cut(s)	383
BstMAI	GTCTC	3 cut(s)	335, 611, 714
BstMBI	GATC	1 cut(s)	380
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 55, 463
BstNI	CCWGG	1 cut(s)	757
BstSCI	CCNGG	1 cut(s)	755
BstV1I	GCAGC	1 cut(s)	769
BstV2I	GAAGAC	2 cut(s)	87, 293
BstXI	CCANNNNNNTGG	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	497, 755
BtgI	CCRYGG	1 cut(s)	701
BtsCI	GGATG	5 cut(s)	60, 268, 352, 438, 627
Cac8I	GCNNGC	1 cut(s)	768
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	676
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	3 cut(s)	259, 647, 702
CviQI	GTAC	1 cut(s)	676
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	382
DpnII	GATC	1 cut(s)	380
DrdI	GACNNNNNNGTC	1 cut(s)	327
DseDI	GACNNNNNNGTC	1 cut(s)	327
Eam1104I	CTCTTC	3 cut(s)	23, 717, 755
EarI	CTCTTC	3 cut(s)	23, 717, 755
Eco130I	CCWWGG	3 cut(s)	315, 701, 717
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	755
EcoT14I	CCWWGG	3 cut(s)	315, 701, 717
ErhI	CCWWGG	3 cut(s)	315, 701, 717
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	3 cut(s)	262, 650, 705
FaiI	YATR	8 cut(s)	108, 162, 207, 260, 309, 603, 648, 703
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	3 cut(s)	258, 646, 701
FauI	CCCGC	1 cut(s)	462
Fnu4HI	GCNGC	1 cut(s)	783
FokI	GGATG	5 cut(s)	67, 275, 359, 425, 614
Fsp4HI	GCNGC	1 cut(s)	783
FspBI	CTAG	1 cut(s)	771
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	783
HaeIII	GGCC	2 cut(s)	497, 755
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	3 cut(s)	262, 650, 705
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	776
HindII	GTYRAC	1 cut(s)	776
HindIII	AAGCTT	1 cut(s)	610
HinfI	GANTC	1 cut(s)	635
Hpy166II	GTNNAC	3 cut(s)	676, 678, 776
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	4 cut(s)	99, 145, 193, 229
Hpy8I	GTNNAC	3 cut(s)	676, 678, 776
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	2 cut(s)	176, 593
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	4 cut(s)	77, 199, 372, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 55, 463
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	3 cut(s)	262, 650, 705
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	380
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	3 cut(s)	31, 45, 186
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	2 cut(s)	443, 547
MalI	GATC	1 cut(s)	382
MbiI	CCGCTC	1 cut(s)	457
MboI	GATC	1 cut(s)	380
MboII	GAAGA	6 cut(s)	28, 40, 87, 293, 704, 772
MnlI	CCTC	9 cut(s)	24, 140, 343, 487, 548, 560, 742, 745, 756
MseI	TTAA	3 cut(s)	36, 585, 787
MspR9I	CCNGG	1 cut(s)	757
Mva1269I	GAATGC	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	757
MwoI	GCNNNNNNNGC	3 cut(s)	40, 55, 463
NcoI	CCATGG	1 cut(s)	701
NdeII	GATC	1 cut(s)	380
NlaIII	CATG	3 cut(s)	262, 650, 705
PcsI	WCGNNNNNNNCGW	1 cut(s)	439
PctI	GAATGC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	635
PkrI	GCNGC	1 cut(s)	784
Psp6I	CCWGG	1 cut(s)	755
PspGI	CCWGG	1 cut(s)	755
PspPI	GGNCC	1 cut(s)	101
RsaI	GTAC	1 cut(s)	677
RsaNI	GTAC	1 cut(s)	676
SaqAI	TTAA	3 cut(s)	36, 585, 787
SatI	GCNGC	1 cut(s)	783
Sau3AI	GATC	1 cut(s)	380
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	757
SfaNI	GCATC	3 cut(s)	31, 45, 186
SinI	GGWCC	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SsiI	CCGC	1 cut(s)	455
SspMI	CTAG	1 cut(s)	771
StyD4I	CCNGG	1 cut(s)	755
StyI	CCWWGG	3 cut(s)	315, 701, 717
TaaI	ACNGT	2 cut(s)	176, 593
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	4 cut(s)	379, 486, 510, 747
TatI	WGTACW	1 cut(s)	675
TfiI	GAWTC	1 cut(s)	635
Tru1I	TTAA	3 cut(s)	36, 585, 787
Tru9I	TTAA	3 cut(s)	36, 585, 787
TseI	GCWGC	1 cut(s)	782
TspDTI	ATGAA	2 cut(s)	247, 505
TspGWI	ACGGA	4 cut(s)	248, 287, 317, 431
VpaK11BI	GGWCC	1 cut(s)	101
XspI	CTAG	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.