pycom11g05360

Belongs to the eukaryotic ribosomal protein eS4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0001275
Physical Location & Seq
Reverse (-)
4122333 .. 4124396
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g05360.3

Sequence Viewer

Length: 1005 bp
ATGATCATTTATTTATTTGGTTGTGGACTCAAAGTCCCAGCCTATTCTGAGCGCGGCCGCACTGAATCTCGCTCCCCACATCGCCCAACCCTAAAACCCCTCTCTTATTCGCTTGCCCGTATAAATCTTAGCCTCTCTCCGCCGTTTCGTTCCTCTGTTTCCTCCTCCTCCCCCTCCTCGCCTGGGGTTTCTGCATCTCACTCTGCAAACATGGCCAGAGGACTGAAGAAGCATTTGAAGCGGCTCAATGCCCCAAAGCATTGGATGCTCGACAAGCTTGGTGGTGCTTTTGCCCCCAAGCCATCATCTGGCCCCCACAAATCCAGGGAGTGCCTTCCCCTTGTTCTTATCCTGAGGAACAGGTTGAAGTATGCACTCACATACCGTGAGGTTGTTTCGATTCTCATGCAGCGCCATATTTTGGTTGATGGAAAGGTCAGGACCGACAAGACCTATCCTTCTGGCTTCATGGATGTTGTTTCGATCCCAAAAACAAATGAGAATTTTCGACTGCTCTTTGACACCAAGGGTCGGTTTAGGCTCCACTCCATTAGAGACGAGGAGGCAAAGTTCAAGCTCTGCAAGGTCCGATCGGTGCAGTTTGGGCAGAAGGGCATCCCCTATCTTAACACTTTTGATGGCCGAACCATTCGCTACCCTGACCCGCTGATCAAGGCCAATGACACTATTAAGCTGGACTTAGAGACCAGCAAGATCACTGACTTCATTAAGTTTGATGTTGGTAATGTTGTCATGGTGACTGGCGGAAGGAATAGGGGACGTGTTGGAGTCATTAAGAACAGGGAGAAGCATAAGGGAAGCTTTGAGACCATCCACGTGCAGGATGCCCTCGGCCATGAGTTTGCAACCCGTCTTGGTAATGTGTTCACCATCGGCAAGGGTACCAAGCCTTGGGTTTCTCTTCCCAAGGGCAAGGGTATCAAGCTAAGCATCATTGAAGAGGCAAAGAAGCGACAAGCGGCCCAAACAGCTGCTACGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
40S_S4_C KOW RS4NT Ribosomal_S4e S4

Protein Analysis

335

Amino Acids

37.28

Weight (kDa)

10.39

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 902
AccB1I GGYRCC 1 cut(s) 902
AccB7I CCANNNNNTGG 3 cut(s) 308, 421, 912
AccII CGCG 1 cut(s) 54
AciI CCGC 7 cut(s) 54, 58, 140, 241, 665, 765, 980
AclWI GGATC 1 cut(s) 478
AcoI YGGCCR 4 cut(s) 55, 213, 640, 853
AcsI RAATTY 1 cut(s) 502
AcuI CTGAAG 1 cut(s) 245
AcvI CACGTG 1 cut(s) 838
AfaI GTAC 1 cut(s) 904
AfiI CCNNNNNNNGG 6 cut(s) 183, 308, 421, 531, 841, 912
AflIII ACRYGT 1 cut(s) 781
AgsI TTSAA 4 cut(s) 238, 367, 574, 959
AhdI GACNNNNNGTC 1 cut(s) 32
AjiI CACGTC 1 cut(s) 782
AjnI CCWGG 2 cut(s) 181, 323
AloI GAACNNNNNNTCC 2 cut(s) 554, 586
AluBI AGCT 6 cut(s) 277, 577, 694, 822, 946, 992
AluI AGCT 6 cut(s) 277, 577, 694, 822, 946, 992
Alw26I GTCTC 3 cut(s) 549, 698, 821
AlwI GGATC 1 cut(s) 478
AoxI GGCC 7 cut(s) 55, 213, 310, 640, 675, 853, 981
ApeKI GCWGC 2 cut(s) 409, 992
ApoI RAATTY 1 cut(s) 502
Asp718I GGTACC 1 cut(s) 902
AspLEI GCGC 2 cut(s) 54, 414
AspS9I GGNCC 4 cut(s) 311, 441, 586, 982
AsuHPI GGTGA 2 cut(s) 769, 880
AvaII GGWCC 2 cut(s) 441, 586
AxyI CCTNAGG 1 cut(s) 353
BalI TGGCCA 1 cut(s) 215
BanI GGYRCC 1 cut(s) 902
BbrPI CACGTG 1 cut(s) 838
BbvI GCAGC 2 cut(s) 421, 979
BccI CCATC 5 cut(s) 310, 422, 632, 839, 899
BceAI ACGGC 1 cut(s) 127
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BciT130I CCWGG 2 cut(s) 183, 325
BclI TGATCA 2 cut(s) 3, 669
BcoDI GTCTC 3 cut(s) 549, 698, 821
BfoI RGCGCY 1 cut(s) 415
BisI GCNGC 6 cut(s) 55, 58, 242, 410, 981, 993
BlpI GCTNAGC 1 cut(s) 947
BlsI GCNGC 6 cut(s) 56, 59, 243, 411, 982, 994
Bme1390I CCNGG 2 cut(s) 183, 325
Bme18I GGWCC 2 cut(s) 441, 586
BmeRI GACNNNNNGTC 1 cut(s) 32
BmgBI CACGTC 1 cut(s) 782
BmgT120I GGNCC 4 cut(s) 311, 441, 586, 982
BmiI GGNNCC 3 cut(s) 313, 542, 904
BmrFI CCNGG 2 cut(s) 183, 325
BmsI GCATC 5 cut(s) 203, 255, 624, 835, 960
Bpu1102I GCTNAGC 1 cut(s) 947
BsaAI YACGTR 1 cut(s) 838
BsaI GGTCTC 2 cut(s) 698, 821
BsaJI CCNNGG 6 cut(s) 182, 324, 525, 850, 911, 927
BsaXI ACNNNNNCTCC 2 cut(s) 554, 584
Bsc4I CCNNNNNNNGG 6 cut(s) 183, 308, 421, 531, 841, 912
Bse1I ACTGG 1 cut(s) 766
Bse21I CCTNAGG 1 cut(s) 353
BseBI CCWGG 2 cut(s) 183, 325
BseDI CCNNGG 6 cut(s) 182, 324, 525, 850, 911, 927
BseGI GGATG 5 cut(s) 270, 478, 615, 831, 850
BseLI CCNNNNNNNGG 6 cut(s) 183, 308, 421, 531, 841, 912
BseMII CTCAG 2 cut(s) 39, 344
BseNI ACTGG 1 cut(s) 766
BseRI GAGGAG 4 cut(s) 154, 157, 166, 575
BseX3I CGGCCG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 421, 979
BseYI CCCAGC 1 cut(s) 37
BsgI GTGCAG 2 cut(s) 617, 860
Bsh1236I CGCG 1 cut(s) 54
Bsh1285I CGRYCG 2 cut(s) 58, 593
BshFI GGCC 7 cut(s) 57, 215, 312, 642, 677, 855, 983
BshNI GGYRCC 1 cut(s) 902
BsiEI CGRYCG 2 cut(s) 58, 593
BslFI GGGAC 2 cut(s) 20, 792
BslI CCNNNNNNNGG 6 cut(s) 183, 308, 421, 531, 841, 912
BsmAI GTCTC 3 cut(s) 549, 698, 821
BsmBI CGTCTC 1 cut(s) 549
BsmFI GGGAC 2 cut(s) 20, 792
BsnI GGCC 7 cut(s) 57, 215, 312, 642, 677, 855, 983
Bso31I GGTCTC 2 cut(s) 698, 821
Bsp143I GATC 5 cut(s) 3, 483, 590, 669, 714
Bsp1720I GCTNAGC 1 cut(s) 947
BspACI CCGC 7 cut(s) 54, 58, 140, 241, 665, 765, 980
BspANI GGCC 7 cut(s) 57, 215, 312, 642, 677, 855, 983
BspCNI CTCAG 2 cut(s) 40, 345
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 3 cut(s) 313, 542, 904
BspPI GGATC 1 cut(s) 478
BspT107I GGYRCC 1 cut(s) 902
BspTNI GGTCTC 2 cut(s) 698, 821
BsrI ACTGG 1 cut(s) 766
BssECI CCNNGG 6 cut(s) 182, 324, 525, 850, 911, 927
BssMI GATC 5 cut(s) 3, 483, 590, 669, 714
BssT1I CCWWGG 3 cut(s) 525, 911, 927
Bst2UI CCWGG 2 cut(s) 183, 325
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 2 cut(s) 927, 954
BstAPI GCANNNNNTGC 1 cut(s) 265
BstBAI YACGTR 1 cut(s) 838
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 5 cut(s) 48, 128, 353, 700, 947
BstF5I GGATG 5 cut(s) 270, 478, 615, 831, 850
BstFNI CGCG 1 cut(s) 54
BstH2I RGCGCY 1 cut(s) 415
BstHHI GCGC 2 cut(s) 54, 414
BstKTI GATC 5 cut(s) 6, 486, 593, 672, 717
BstMAI GTCTC 3 cut(s) 549, 698, 821
BstMBI GATC 5 cut(s) 3, 483, 590, 669, 714
BstMCI CGRYCG 2 cut(s) 58, 593
BstMWI GCNNNNNNNGC 7 cut(s) 212, 238, 265, 274, 604, 989, 998
BstNI CCWGG 2 cut(s) 183, 325
BstSCI CCNGG 2 cut(s) 181, 323
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 421, 979
BstXI CCANNNNNNTGG 1 cut(s) 261
BstZI CGGCCG 1 cut(s) 55
Bsu36I CCTNAGG 1 cut(s) 353
BsuRI GGCC 7 cut(s) 57, 215, 312, 642, 677, 855, 983
BtgZI GCGATG 1 cut(s) 65
BtrI CACGTC 1 cut(s) 782
BtsCI GGATG 5 cut(s) 270, 478, 615, 831, 850
BtsIMutI CAGTG 2 cut(s) 60, 717
Cac8I GCNNGC 1 cut(s) 114
CciNI GCGGCCGC 1 cut(s) 55
CfoI GCGC 2 cut(s) 54, 414
Cfr13I GGNCC 4 cut(s) 311, 441, 586, 982
Csp6I GTAC 1 cut(s) 903
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviAII CATG 5 cut(s) 211, 406, 469, 754, 857
CviQI GTAC 1 cut(s) 903
DdeI CTNAG 5 cut(s) 48, 128, 353, 700, 947
DpnI GATC 5 cut(s) 5, 485, 592, 671, 716
DpnII GATC 5 cut(s) 3, 483, 590, 669, 714
DriI GACNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 4 cut(s) 55, 213, 640, 853
EagI CGGCCG 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 927, 954
Eam1105I GACNNNNNGTC 1 cut(s) 32
EarI CTCTTC 2 cut(s) 927, 954
EciI GGCGGA 2 cut(s) 129, 780
EclXI CGGCCG 1 cut(s) 55
Eco130I CCWWGG 3 cut(s) 525, 911, 927
Eco31I GGTCTC 2 cut(s) 698, 821
Eco47I GGWCC 2 cut(s) 441, 586
Eco52I CGGCCG 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 245
Eco72I CACGTG 1 cut(s) 838
Eco81I CCTNAGG 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 181, 323
EcoT14I CCWWGG 3 cut(s) 525, 911, 927
ErhI CCWWGG 3 cut(s) 525, 911, 927
Esp3I CGTCTC 1 cut(s) 549
FaeI CATG 5 cut(s) 214, 409, 472, 757, 860
FalI AAGNNNNNCTT 4 cut(s) 683, 715, 806, 838
FaqI GGGAC 2 cut(s) 20, 792
FatI CATG 5 cut(s) 210, 405, 468, 753, 856
FauI CCCGC 1 cut(s) 672
FbaI TGATCA 2 cut(s) 3, 669
Fnu4HI GCNGC 6 cut(s) 55, 58, 242, 410, 981, 993
FokI GGATG 5 cut(s) 277, 485, 602, 818, 857
Fsp4HI GCNGC 6 cut(s) 55, 58, 242, 410, 981, 993
GlaI GCGC 2 cut(s) 53, 413
GluI GCNGC 6 cut(s) 55, 58, 242, 410, 981, 993
GsaI CCCAGC 1 cut(s) 41
HaeII RGCGCY 1 cut(s) 415
HaeIII GGCC 7 cut(s) 57, 215, 312, 642, 677, 855, 983
HhaI GCGC 2 cut(s) 54, 414
Hin1II CATG 5 cut(s) 214, 409, 472, 757, 860
Hin6I GCGC 2 cut(s) 52, 412
HinP1I GCGC 2 cut(s) 52, 412
HindIII AAGCTT 2 cut(s) 275, 820
HinfI GANTC 4 cut(s) 27, 65, 400, 789
HphI GGTGA 2 cut(s) 769, 880
Hpy166II GTNNAC 2 cut(s) 26, 888
Hpy188I TCNGA 2 cut(s) 49, 590
Hpy188III TCNNGA 2 cut(s) 352, 439
Hpy8I GTNNAC 2 cut(s) 26, 888
HpyAV CCTTC 4 cut(s) 344, 468, 604, 762
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 2 cut(s) 781, 837
HpyCH4V TGCA 8 cut(s) 194, 206, 374, 409, 582, 598, 841, 866
HpyF10VI GCNNNNNNNGC 7 cut(s) 212, 238, 265, 274, 604, 989, 998
HpyF3I CTNAG 5 cut(s) 48, 128, 353, 700, 947
HpySE526I ACGT 2 cut(s) 781, 837
Hsp92II CATG 5 cut(s) 214, 409, 472, 757, 860
HspAI GCGC 2 cut(s) 52, 412
KpnI GGTACC 1 cut(s) 906
Ksp22I TGATCA 2 cut(s) 3, 669
Kzo9I GATC 5 cut(s) 3, 483, 590, 669, 714
LmnI GCTCC 2 cut(s) 77, 546
Lsp1109I GCAGC 2 cut(s) 421, 979
LweI GCATC 5 cut(s) 203, 255, 624, 835, 960
MaeII ACGT 2 cut(s) 781, 837
MaeIII GTNAC 1 cut(s) 757
MalI GATC 5 cut(s) 5, 485, 592, 671, 716
MboI GATC 5 cut(s) 3, 483, 590, 669, 714
MboII GAAGA 3 cut(s) 238, 914, 971
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 1 cut(s) 502
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 2 cut(s) 21, 798
MmeI TCCRAC 1 cut(s) 766
Mox20I TGGCCA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 215
MseI TTAA 5 cut(s) 627, 690, 729, 795, 1003
MslI CAYNNNNRTG 1 cut(s) 836
Msp20I TGGCCA 1 cut(s) 215
MspA1I CMGCKG 2 cut(s) 667, 992
MspR9I CCNGG 2 cut(s) 183, 325
MvaI CCWGG 2 cut(s) 183, 325
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 7 cut(s) 212, 238, 265, 274, 604, 989, 998
NdeII GATC 5 cut(s) 3, 483, 590, 669, 714
NlaIII CATG 5 cut(s) 214, 409, 472, 757, 860
NlaIV GGNNCC 3 cut(s) 313, 542, 904
NmeAIII GCCGAG 1 cut(s) 831
NmuCI GTSAC 1 cut(s) 757
NotI GCGGCCGC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 65, 400
PflMI CCANNNNNTGG 3 cut(s) 308, 421, 912
PkrI GCNGC 6 cut(s) 56, 59, 243, 411, 982, 994
Ple19I CGATCG 1 cut(s) 593
PleI GAGTC 2 cut(s) 21, 797
PmaCI CACGTG 1 cut(s) 838
PmlI CACGTG 1 cut(s) 838
PpsI GAGTC 2 cut(s) 21, 797
Ppu21I YACGTR 1 cut(s) 838
Psp6I CCWGG 2 cut(s) 181, 323
PspCI CACGTG 1 cut(s) 838
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 2 cut(s) 181, 323
PspN4I GGNNCC 3 cut(s) 313, 542, 904
PspPI GGNCC 4 cut(s) 311, 441, 586, 982
PvuI CGATCG 1 cut(s) 593
PvuII CAGCTG 1 cut(s) 992
RsaI GTAC 1 cut(s) 904
RsaNI GTAC 1 cut(s) 903
RseI CAYNNNNRTG 1 cut(s) 836
SaqAI TTAA 5 cut(s) 627, 690, 729, 795, 1003
SatI GCNGC 6 cut(s) 55, 58, 242, 410, 981, 993
Sau3AI GATC 5 cut(s) 3, 483, 590, 669, 714
Sau96I GGNCC 4 cut(s) 311, 441, 586, 982
SchI GAGTC 2 cut(s) 21, 798
ScrFI CCNGG 2 cut(s) 183, 325
SfaNI GCATC 5 cut(s) 203, 255, 624, 835, 960
SinI GGWCC 2 cut(s) 441, 586
SmiMI CAYNNNNRTG 1 cut(s) 836
Sse9I AATT 1 cut(s) 502
SsiI CCGC 7 cut(s) 54, 58, 140, 241, 665, 765, 980
StyD4I CCNGG 2 cut(s) 181, 323
StyI CCWWGG 3 cut(s) 525, 911, 927
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 2 cut(s) 784, 840
TaqI TCGA 4 cut(s) 270, 398, 482, 508
TaqII GACCGA 1 cut(s) 458
TasI AATT 1 cut(s) 502
TauI GCSGC 4 cut(s) 57, 60, 244, 983
TfiI GAWTC 2 cut(s) 65, 400
Tru1I TTAA 5 cut(s) 627, 690, 729, 795, 1003
Tru9I TTAA 5 cut(s) 627, 690, 729, 795, 1003
TscAI CASTG 2 cut(s) 67, 724
TseFI GTSAC 1 cut(s) 757
TseI GCWGC 2 cut(s) 409, 992
Tsp45I GTSAC 1 cut(s) 757
TspDTI ATGAA 2 cut(s) 457, 715
TspRI CASTG 2 cut(s) 67, 724
Van91I CCANNNNNTGG 3 cut(s) 308, 421, 912
VpaK11BI GGWCC 2 cut(s) 441, 586
XapI RAATTY 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.