pycom10g18880

Belongs to the eukaryotic ribosomal protein eS4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0001275
Physical Location & Seq
Forward (+)
22132107 .. 22134392
2286 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g18880.4

Sequence Viewer

Length: 795 bp
ATGGCTCGTGGTTTGAAGAAACATTTGAAGAGGCTCAATGCCCCCAAGCATTGGATGCTCGACAAACTCGGTGGTGCATTTGCTCCCAAGCCTTCGTCTGGACCTCACAAATCCAGGGAATGCCTGCCATTGGTTATCATCTTGCGTAATCGGTTGAAGTATGCTCTGACATACCGTGAGGTTATTTCCATTCTGATGCAACGACATGTTCTCGTTGATGGGAAAGTGAGGACAGATAAGACATATCCTTCTGGTTTCATGGATGTCGTTTCAATCCCCAAGACAAATGAGAACTTCCGTCTTCTTTATGACACCAAGGGTCGGTTCCGTCTCCATTCAATCAGGGATGAAGAAGCAAAGTTCAAGCTCTGCAAAGTCCGATCTGTGCAGTTTGGACAGAAAGGCATTCCATACATAAACACCTATGACGGGCGTACAATCCGTTACCCAGACCCTCTCATCAAGGCAAATGACACCATTAAGCTGGACTTGGAGACCAACAAGATCACTGACTTCATCAAGTTTGATGTTGGCAATGTGGTCATGGTGACTGGAGGAAGGAACAGGGGGCGTGTTGGAGTAATCAAGAACAGGGAGAAGCATAAGGGCAGCTTCGAGACAATCCACGTCCAGGATGCCAGTGGTCATGAGTTTGCAACTCGGTTGGGCAATGTGTTCACAATTGGCAAGGGGACCAAGCCATGGATAAGCCTTCCTAAGGGTAAGGGTATTAAGCTTACCATTATTGAAGAGGCCAAGAAGAGAGCGGCAGCACAAGCCACAGCCACGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
40S_S4_C KOW RS4NT Ribosomal_S4e S4

Protein Analysis

265

Amino Acids

29.82

Weight (kDa)

10.25

Isoelectric Point (pI)

20.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 51, 702
AccBSI CCGCTC 1 cut(s) 767
AciI CCGC 1 cut(s) 767
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 8 cut(s) 51, 98, 130, 321, 429, 631, 702, 718
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 7 cut(s) 16, 28, 157, 273, 339, 364, 749
AjiI CACGTC 1 cut(s) 628
AjnI CCWGG 2 cut(s) 113, 630
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AluBI AGCT 4 cut(s) 367, 484, 612, 736
AluI AGCT 4 cut(s) 367, 484, 612, 736
Alw26I GTCTC 3 cut(s) 335, 488, 611
AoxI GGCC 1 cut(s) 753
ApeKI GCWGC 2 cut(s) 609, 770
AspS9I GGNCC 2 cut(s) 101, 693
AsuHPI GGTGA 1 cut(s) 559
AvaII GGWCC 2 cut(s) 101, 693
AxyI CCTNAGG 1 cut(s) 717
BauI CACGAG 1 cut(s) 6
BbsI GAAGAC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 621, 782
BccI CCATC 1 cut(s) 212
BciT130I CCWGG 2 cut(s) 115, 632
BcoDI GTCTC 3 cut(s) 335, 488, 611
BisI GCNGC 3 cut(s) 610, 768, 771
BlsI GCNGC 3 cut(s) 611, 769, 772
Bme1390I CCNGG 2 cut(s) 115, 632
Bme18I GGWCC 2 cut(s) 101, 693
BmgBI CACGTC 1 cut(s) 628
BmgT120I GGNCC 2 cut(s) 101, 693
BmiI GGNNCC 2 cut(s) 326, 694
BmrFI CCNGG 2 cut(s) 115, 632
BmsI GCATC 3 cut(s) 45, 186, 625
BpiI GAAGAC 1 cut(s) 293
BpmI CTGGAG 1 cut(s) 573
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 4 cut(s) 114, 315, 701, 786
Bsc4I CCNNNNNNNGG 8 cut(s) 51, 98, 130, 321, 429, 631, 702, 718
Bse1I ACTGG 2 cut(s) 556, 639
Bse21I CCTNAGG 1 cut(s) 717
Bse3DI GCAATG 2 cut(s) 541, 676
BseBI CCWGG 2 cut(s) 115, 632
BseDI CCNNGG 4 cut(s) 114, 315, 701, 786
BseGI GGATG 4 cut(s) 60, 268, 352, 640
BseLI CCNNNNNNNGG 8 cut(s) 51, 98, 130, 321, 429, 631, 702, 718
BseMI GCAATG 2 cut(s) 541, 676
BseNI ACTGG 2 cut(s) 556, 639
BseXI GCAGC 2 cut(s) 621, 782
BsgI GTGCAG 1 cut(s) 407
BshFI GGCC 1 cut(s) 755
BslFI GGGAC 1 cut(s) 706
BslI CCNNNNNNNGG 8 cut(s) 51, 98, 130, 321, 429, 631, 702, 718
BsmAI GTCTC 3 cut(s) 335, 488, 611
BsmBI CGTCTC 1 cut(s) 335
BsmFI GGGAC 1 cut(s) 706
BsmI GAATGC 2 cut(s) 125, 405
BsnI GGCC 1 cut(s) 755
Bso31I GGTCTC 1 cut(s) 488
Bsp143I GATC 2 cut(s) 380, 504
Bsp19I CCATGG 1 cut(s) 701
BspACI CCGC 1 cut(s) 767
BspANI GGCC 1 cut(s) 755
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 2 cut(s) 326, 694
BspTNI GGTCTC 1 cut(s) 488
BsrBI CCGCTC 1 cut(s) 767
BsrDI GCAATG 2 cut(s) 541, 676
BsrI ACTGG 2 cut(s) 556, 639
BssECI CCNNGG 4 cut(s) 114, 315, 701, 786
BssMI GATC 2 cut(s) 380, 504
BssSI CACGAG 1 cut(s) 6
BssT1I CCWWGG 2 cut(s) 315, 701
Bst2BI CACGAG 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 115, 632
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 3 cut(s) 23, 744, 755
BstAPI GCANNNNNTGC 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 717
BstDSI CCRYGG 2 cut(s) 701, 786
BstENI CCTNNNNNAGG 1 cut(s) 716
BstF5I GGATG 4 cut(s) 60, 268, 352, 640
BstKTI GATC 2 cut(s) 383, 507
BstMAI GTCTC 3 cut(s) 335, 488, 611
BstMBI GATC 2 cut(s) 380, 504
BstMWI GCNNNNNNNGC 2 cut(s) 55, 776
BstNI CCWGG 2 cut(s) 115, 632
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 113, 630
BstV1I GCAGC 2 cut(s) 621, 782
BstV2I GAAGAC 1 cut(s) 293
BstXI CCANNNNNNTGG 1 cut(s) 484
Bsu36I CCTNAGG 1 cut(s) 717
BsuRI GGCC 1 cut(s) 755
BtgI CCRYGG 2 cut(s) 701, 786
BtrI CACGTC 1 cut(s) 628
BtsCI GGATG 4 cut(s) 60, 268, 352, 640
BtsIMutI CAGTG 2 cut(s) 507, 646
Cac8I GCNNGC 1 cut(s) 125
CciI TCATGA 1 cut(s) 646
Cfr13I GGNCC 2 cut(s) 101, 693
Csp6I GTAC 1 cut(s) 435
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 5 cut(s) 206, 259, 544, 647, 702
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 1 cut(s) 717
DpnI GATC 2 cut(s) 382, 506
DpnII GATC 2 cut(s) 380, 504
Eam1104I CTCTTC 3 cut(s) 23, 744, 755
EarI CTCTTC 3 cut(s) 23, 744, 755
Eco130I CCWWGG 2 cut(s) 315, 701
Eco31I GGTCTC 1 cut(s) 488
Eco47I GGWCC 2 cut(s) 101, 693
Eco81I CCTNAGG 1 cut(s) 717
EcoNI CCTNNNNNAGG 1 cut(s) 716
EcoRII CCWGG 2 cut(s) 113, 630
EcoT14I CCWWGG 2 cut(s) 315, 701
ErhI CCWWGG 2 cut(s) 315, 701
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 5 cut(s) 209, 262, 547, 650, 705
FalI AAGNNNNNCTT 4 cut(s) 473, 505, 596, 628
FaqI GGGAC 1 cut(s) 706
FatI CATG 5 cut(s) 205, 258, 543, 646, 701
Fnu4HI GCNGC 3 cut(s) 610, 768, 771
FokI GGATG 4 cut(s) 67, 275, 359, 647
Fsp4HI GCNGC 3 cut(s) 610, 768, 771
GluI GCNGC 3 cut(s) 610, 768, 771
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 1 cut(s) 755
Hin1II CATG 5 cut(s) 209, 262, 547, 650, 705
HindIII AAGCTT 1 cut(s) 734
HphI GGTGA 1 cut(s) 559
Hpy166II GTNNAC 1 cut(s) 678
Hpy188I TCNGA 3 cut(s) 168, 195, 380
Hpy188III TCNNGA 4 cut(s) 99, 586, 616, 647
Hpy8I GTNNAC 1 cut(s) 678
HpyAV CCTTC 4 cut(s) 102, 258, 552, 722
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 627
HpyCH4V TGCA 5 cut(s) 77, 199, 372, 388, 656
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 776
HpyF3I CTNAG 1 cut(s) 717
HpySE526I ACGT 1 cut(s) 627
Hsp92II CATG 5 cut(s) 209, 262, 547, 650, 705
Kzo9I GATC 2 cut(s) 380, 504
LmnI GCTCC 1 cut(s) 88
Lsp1109I GCAGC 2 cut(s) 621, 782
LweI GCATC 3 cut(s) 45, 186, 625
MaeII ACGT 1 cut(s) 627
MaeIII GTNAC 2 cut(s) 443, 547
MalI GATC 2 cut(s) 382, 506
MbiI CCGCTC 1 cut(s) 767
MboI GATC 2 cut(s) 380, 504
MboII GAAGA 6 cut(s) 28, 40, 293, 362, 761, 772
MfeI CAATTG 1 cut(s) 681
MluCI AATT 1 cut(s) 681
MmeI TCCRAC 1 cut(s) 556
MnlI CCTC 7 cut(s) 24, 114, 172, 222, 465, 548, 745
MseI TTAA 3 cut(s) 480, 732, 793
MslI CAYNNNNRTG 1 cut(s) 194
MspR9I CCNGG 2 cut(s) 115, 632
MunI CAATTG 1 cut(s) 681
Mva1269I GAATGC 2 cut(s) 125, 405
MvaI CCWGG 2 cut(s) 115, 632
MwoI GCNNNNNNNGC 2 cut(s) 55, 776
NcoI CCATGG 1 cut(s) 701
NdeII GATC 2 cut(s) 380, 504
NlaIII CATG 5 cut(s) 209, 262, 547, 650, 705
NlaIV GGNNCC 2 cut(s) 326, 694
NmuCI GTSAC 1 cut(s) 547
NspI RCATGY 1 cut(s) 209
PagI TCATGA 1 cut(s) 646
PciI ACATGT 1 cut(s) 205
PctI GAATGC 2 cut(s) 125, 405
PflMI CCANNNNNTGG 2 cut(s) 51, 702
PfoI TCCNGGA 1 cut(s) 630
PkrI GCNGC 3 cut(s) 611, 769, 772
PscI ACATGT 1 cut(s) 205
Psp6I CCWGG 2 cut(s) 113, 630
PspGI CCWGG 2 cut(s) 113, 630
PspN4I GGNNCC 2 cut(s) 326, 694
PspPI GGNCC 2 cut(s) 101, 693
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 3 cut(s) 480, 732, 793
SatI GCNGC 3 cut(s) 610, 768, 771
Sau3AI GATC 2 cut(s) 380, 504
Sau96I GGNCC 2 cut(s) 101, 693
ScrFI CCNGG 2 cut(s) 115, 632
SetI ASST 8 cut(s) 106, 183, 369, 425, 486, 614, 630, 738
SfaNI GCATC 3 cut(s) 45, 186, 625
SinI GGWCC 2 cut(s) 101, 693
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 1 cut(s) 681
SsiI CCGC 1 cut(s) 767
StyD4I CCNGG 2 cut(s) 113, 630
StyI CCWWGG 2 cut(s) 315, 701
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 630
TaqI TCGA 2 cut(s) 60, 615
TasI AATT 1 cut(s) 681
TauI GCSGC 1 cut(s) 770
Tru1I TTAA 3 cut(s) 480, 732, 793
Tru9I TTAA 3 cut(s) 480, 732, 793
TscAI CASTG 2 cut(s) 514, 646
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 2 cut(s) 609, 770
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 3 cut(s) 247, 363, 505
TspGWI ACGGA 3 cut(s) 287, 317, 431
TspRI CASTG 2 cut(s) 514, 646
Van91I CCANNNNNTGG 2 cut(s) 51, 702
VpaK11BI GGWCC 2 cut(s) 101, 693
XagI CCTNNNNNAGG 1 cut(s) 716
XceI RCATGY 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.