Rh5DG496400

Belongs to the eukaryotic ribosomal protein eS4 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
77970194 .. 77972236
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG496400.1

Sequence Viewer

Length: 600 bp
ATGCAACGTCATGTTTTGGTTGATGGAAAGGTCAGGACTGATAAGACCTACCCTGCTGGCTTCATGGATGTTGTTTCCATCCCAAAAACCAATGAGAACTTCCGTCTGCTCTACGACACCAAGGGTCGTTTCCGTCTCCATTCAATCAGGGATGAGGAGGCAAAGTTCAAGCTCTGCAAGGTTCGCTCAGTGCAGTTTGGGCAGAAGAACATCCCCTATATTAACACTTATGATGGGAGAACTATTCGCTACCCAGACCCACTTATTAAGGCCAATGATACTATCAAGCTGGACTTAGAGACCAACAAGATTATTGACTTCATTAAGTTTGATGTTGGGAATGTTGTCATGGTGACTGGTGGAAGGAATAGGGGACGTGTTGGAGTCATCAAGAACAGGGAAAAGCATAAGGGAAGCTTTGAGACCATCCACGTTCAGGATGCCGCAGGTCATGAGTTTGCCACCCGTCTTGGCAATGTGTTCACGATTGGCAAGGGTACAAAGCCTTGGGTGTCACTTCCCAAGGGCAAGGGTATCAAGCTCACCATCATTGAGGAGGCAAGGAAGCGACAAGCAGCACTCCAAACTGCTACTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

199

Amino Acids

22.56

Weight (kDa)

10.06

Isoelectric Point (pI)

15.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S4e PF00900 30 - 104 2.5e-34 Ribosomal family S4e
KOW PF00467 112 - 145 1.2e-06 KOW motif
40S_S4_C PF16121 147 - 192 1e-25 40S ribosomal protein S4 C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 437
AciI CCGC 1 cut(s) 444
AfaI GTAC 1 cut(s) 499
AfiI CCNNNNNNNGG 1 cut(s) 436
AflIII ACRYGT 1 cut(s) 376
AgsI TTSAA 2 cut(s) 144, 169
AjiI CACGTC 1 cut(s) 377
AjuI GAANNNNNNNTTGG 4 cut(s) 83, 113, 115, 145
AloI GAACNNNNNNTCC 2 cut(s) 149, 181
AluBI AGCT 4 cut(s) 172, 289, 417, 541
AluI AGCT 4 cut(s) 172, 289, 417, 541
Alw26I GTCTC 3 cut(s) 140, 293, 416
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 575
AsuHPI GGTGA 2 cut(s) 364, 535
BbvI GCAGC 1 cut(s) 587
BccI CCATC 5 cut(s) 17, 86, 227, 434, 554
BcoDI GTCTC 3 cut(s) 140, 293, 416
BfuAI ACCTGC 1 cut(s) 437
BisI GCNGC 2 cut(s) 444, 576
BlsI GCNGC 2 cut(s) 445, 577
BmgBI CACGTC 1 cut(s) 377
BmsI GCATC 1 cut(s) 430
BsaI GGTCTC 2 cut(s) 293, 416
BsaJI CCNNGG 3 cut(s) 120, 506, 522
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse1I ACTGG 1 cut(s) 361
Bse3DI GCAATG 1 cut(s) 481
BseDI CCNNGG 3 cut(s) 120, 506, 522
BseGI GGATG 6 cut(s) 73, 78, 157, 210, 426, 445
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMI GCAATG 1 cut(s) 481
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 361
BseRI GAGGAG 2 cut(s) 170, 569
BseXI GCAGC 1 cut(s) 587
BsgI GTGCAG 1 cut(s) 212
BshFI GGCC 1 cut(s) 272
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 3 cut(s) 140, 293, 416
BsmBI CGTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 387
BsnI GGCC 1 cut(s) 272
Bso31I GGTCTC 2 cut(s) 293, 416
BspACI CCGC 1 cut(s) 444
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 1 cut(s) 200
BspHI TCATGA 1 cut(s) 451
BspMI ACCTGC 1 cut(s) 437
BspTNI GGTCTC 2 cut(s) 293, 416
BsrDI GCAATG 1 cut(s) 481
BsrI ACTGG 1 cut(s) 361
BssECI CCNNGG 3 cut(s) 120, 506, 522
BssT1I CCWWGG 3 cut(s) 120, 506, 522
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 187, 295
BstF5I GGATG 6 cut(s) 73, 78, 157, 210, 426, 445
BstMAI GTCTC 3 cut(s) 140, 293, 416
BstMWI GCNNNNNNNGC 2 cut(s) 183, 199
BstV1I GCAGC 1 cut(s) 587
BsuRI GGCC 1 cut(s) 272
BtrI CACGTC 1 cut(s) 377
BtsCI GGATG 6 cut(s) 73, 78, 157, 210, 426, 445
BtsIMutI CAGTG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 437
Cac8I GCNNGC 1 cut(s) 58
CciI TCATGA 1 cut(s) 451
Csp6I GTAC 1 cut(s) 498
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviAII CATG 4 cut(s) 11, 64, 349, 452
CviJI RGCY 7 cut(s) 60, 172, 272, 289, 417, 505, 541
CviKI_1 RGCY 7 cut(s) 60, 172, 272, 289, 417, 505, 541
CviQI GTAC 1 cut(s) 498
DdeI CTNAG 2 cut(s) 187, 295
Eco130I CCWWGG 3 cut(s) 120, 506, 522
Eco31I GGTCTC 2 cut(s) 293, 416
EcoT14I CCWWGG 3 cut(s) 120, 506, 522
ErhI CCWWGG 3 cut(s) 120, 506, 522
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 4 cut(s) 14, 67, 352, 455
FaiI YATR 7 cut(s) 12, 65, 219, 231, 350, 408, 453
FalI AAGNNNNNCTT 4 cut(s) 278, 310, 401, 433
FaqI GGGAC 1 cut(s) 387
FatI CATG 4 cut(s) 10, 63, 348, 451
Fnu4HI GCNGC 2 cut(s) 444, 576
FokI GGATG 6 cut(s) 65, 80, 164, 197, 413, 452
Fsp4HI GCNGC 2 cut(s) 444, 576
GluI GCNGC 2 cut(s) 444, 576
HaeIII GGCC 1 cut(s) 272
Hin1II CATG 4 cut(s) 14, 67, 352, 455
HindIII AAGCTT 1 cut(s) 415
HinfI GANTC 1 cut(s) 384
HphI GGTGA 2 cut(s) 364, 535
Hpy166II GTNNAC 1 cut(s) 483
Hpy188III TCNNGA 5 cut(s) 34, 391, 437, 452, 484
Hpy8I GTNNAC 1 cut(s) 483
HpyAV CCTTC 1 cut(s) 357
HpyCH4IV ACGT 3 cut(s) 7, 376, 432
HpyCH4V TGCA 3 cut(s) 4, 177, 193
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 199
HpyF3I CTNAG 2 cut(s) 187, 295
HpySE526I ACGT 3 cut(s) 7, 376, 432
Hsp92II CATG 4 cut(s) 14, 67, 352, 455
Lsp1109I GCAGC 1 cut(s) 587
LweI GCATC 1 cut(s) 430
MaeII ACGT 3 cut(s) 7, 376, 432
MaeIII GTNAC 2 cut(s) 352, 513
MboII GAAGA 1 cut(s) 217
MlyI GAGTC 1 cut(s) 393
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 4 cut(s) 148, 151, 547, 550
MseI TTAA 4 cut(s) 222, 267, 324, 598
MwoI GCNNNNNNNGC 2 cut(s) 183, 199
NlaIII CATG 4 cut(s) 14, 67, 352, 455
NmuCI GTSAC 2 cut(s) 352, 513
PagI TCATGA 1 cut(s) 451
PkrI GCNGC 2 cut(s) 445, 577
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
SaqAI TTAA 4 cut(s) 222, 267, 324, 598
SatI GCNGC 2 cut(s) 444, 576
SchI GAGTC 1 cut(s) 393
SfaNI GCATC 1 cut(s) 430
SsiI CCGC 1 cut(s) 444
StyI CCWWGG 3 cut(s) 120, 506, 522
TaiI ACGT 3 cut(s) 10, 379, 435
TauI GCSGC 1 cut(s) 446
Tru1I TTAA 4 cut(s) 222, 267, 324, 598
Tru9I TTAA 4 cut(s) 222, 267, 324, 598
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 2 cut(s) 352, 513
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 2 cut(s) 352, 513
TspDTI ATGAA 2 cut(s) 52, 310
TspGWI ACGGA 2 cut(s) 92, 122
TspRI CASTG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.