Rorug05G0069500

Belongs to the eukaryotic ribosomal protein eS4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001275
Physical Location & Seq
Reverse (-)
5940183 .. 5941273
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0069500.1

Sequence Viewer

Length: 543 bp
ATGTATTCCTCGATATTCACATCCTCTCACCTCATGACCCAAGAGCCACGAACTCTGCAACTAATGGAGCTCCAAACCCCGCAACAAATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGATGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACGTCAAGGGATTTAAGTGCCCATCTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGGAACTAGTTCTCTTGCTGGTGGATCCATCGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGTAATGAAGGATTTCTTGATTTAAATTTTGTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
40S_S4_C KOW RS4NT Ribosomal_S4e S4

Protein Analysis

180

Amino Acids

20.37

Weight (kDa)

5.53

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 59 - 120 9e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AclWI GGATC 4 cut(s) 228, 414, 427, 462
AcsI RAATTY 1 cut(s) 529
AfaI GTAC 1 cut(s) 178
AflIII ACRYGT 1 cut(s) 301
AhlI ACTAGT 2 cut(s) 401, 446
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 3 cut(s) 70, 140, 286
AluI AGCT 3 cut(s) 70, 140, 286
Alw21I GWGCWC 2 cut(s) 72, 264
AlwI GGATC 4 cut(s) 228, 414, 427, 462
Ama87I CYCGRG 1 cut(s) 348
ApeKI GCWGC 2 cut(s) 137, 380
ApoI RAATTY 1 cut(s) 529
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
Asp700I GAANNNNTTC 2 cut(s) 403, 516
AspS9I GGNCC 1 cut(s) 441
AsuHPI GGTGA 1 cut(s) 20
AvaI CYCGRG 1 cut(s) 348
AvaII GGWCC 1 cut(s) 441
BaeGI GKGCMC 2 cut(s) 251, 393
BamHI GGATCC 1 cut(s) 419
BanII GRGCYC 2 cut(s) 72, 349
BauI CACGAG 1 cut(s) 269
Bbv12I GWGCWC 2 cut(s) 72, 264
BbvI GCAGC 2 cut(s) 149, 367
BccI CCATC 4 cut(s) 177, 259, 431, 455
BceAI ACGGC 1 cut(s) 159
BcuI ACTAGT 2 cut(s) 401, 446
BfaI CTAG 2 cut(s) 402, 447
BfmI CTRYAG 1 cut(s) 255
BglII AGATCT 1 cut(s) 273
BisI GCNGC 2 cut(s) 138, 381
BlsI GCNGC 2 cut(s) 139, 382
Bme18I GGWCC 1 cut(s) 441
BmeT110I CYCGRG 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 441
BmiI GGNNCC 5 cut(s) 93, 332, 421, 442, 490
BpmI CTGGAG 3 cut(s) 180, 266, 369
BpuEI CTTGAG 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 393
Bse1I ACTGG 3 cut(s) 292, 386, 508
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 1 cut(s) 20
BseNI ACTGG 3 cut(s) 292, 386, 508
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 2 cut(s) 251, 393
BseXI GCAGC 2 cut(s) 149, 367
BsiHKAI GWGCWC 2 cut(s) 72, 264
BsiHKCI CYCGRG 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 348
Bsp1286I GDGCHC 5 cut(s) 72, 251, 264, 349, 393
Bsp143I GATC 5 cut(s) 220, 273, 419, 467, 475
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 1 cut(s) 80
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 5 cut(s) 93, 332, 421, 442, 490
BspPI GGATC 4 cut(s) 228, 414, 427, 462
BsrI ACTGG 3 cut(s) 292, 386, 508
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 5 cut(s) 220, 273, 419, 467, 475
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 393
Bst2BI CACGAG 1 cut(s) 269
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 1 cut(s) 20
BstKTI GATC 5 cut(s) 223, 276, 422, 470, 478
BstMBI GATC 5 cut(s) 220, 273, 419, 467, 475
BstNSI RCATGY 1 cut(s) 305
BstSFI CTRYAG 1 cut(s) 255
BstSLI GKGCMC 2 cut(s) 251, 393
BstV1I GCAGC 2 cut(s) 149, 367
BstX2I RGATCY 4 cut(s) 220, 273, 419, 467
BstXI CCANNNNNNTGG 1 cut(s) 140
BstYI RGATCY 4 cut(s) 220, 273, 419, 467
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 1 cut(s) 20
BtsIMutI CAGTG 1 cut(s) 393
CciI TCATGA 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 441
Csp6I GTAC 1 cut(s) 177
CviAII CATG 4 cut(s) 34, 157, 302, 394
CviJI RGCY 7 cut(s) 46, 70, 140, 174, 286, 347, 380
CviKI_1 RGCY 7 cut(s) 46, 70, 140, 174, 286, 347, 380
CviQI GTAC 1 cut(s) 177
DpnI GATC 5 cut(s) 222, 275, 421, 469, 477
DpnII GATC 5 cut(s) 220, 273, 419, 467, 475
DraI TTTAAA 1 cut(s) 528
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 393
Eco24I GRGCYC 2 cut(s) 72, 349
Eco47I GGWCC 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 348
EcoICRI GAGCTC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 393
EcoT38I GRGCYC 2 cut(s) 72, 349
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 4 cut(s) 37, 160, 305, 397
FaiI YATR 6 cut(s) 35, 158, 297, 303, 395, 541
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FatI CATG 4 cut(s) 33, 156, 301, 393
FauI CCCGC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 138, 381
FokI GGATG 1 cut(s) 7
FriOI GRGCYC 2 cut(s) 72, 349
Fsp4HI GCNGC 2 cut(s) 138, 381
FspBI CTAG 2 cut(s) 402, 447
GluI GCNGC 2 cut(s) 138, 381
GsuI CTGGAG 3 cut(s) 180, 266, 369
Hin1II CATG 4 cut(s) 37, 160, 305, 397
HinfI GANTC 2 cut(s) 187, 210
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 444
Hpy188III TCNNGA 6 cut(s) 34, 197, 269, 334, 350, 521
Hpy8I GTNNAC 1 cut(s) 444
HpyAV CCTTC 1 cut(s) 506
HpyCH4IV ACGT 2 cut(s) 231, 339
HpyCH4V TGCA 1 cut(s) 58
HpySE526I ACGT 2 cut(s) 231, 339
Hsp92II CATG 4 cut(s) 37, 160, 305, 397
Kzo9I GATC 5 cut(s) 220, 273, 419, 467, 475
LmnI GCTCC 3 cut(s) 67, 75, 388
Lsp1109I GCAGC 2 cut(s) 149, 367
MaeI CTAG 2 cut(s) 402, 447
MaeII ACGT 2 cut(s) 231, 339
MalI GATC 5 cut(s) 222, 275, 421, 469, 477
MboI GATC 5 cut(s) 220, 273, 419, 467, 475
MflI RGATCY 4 cut(s) 220, 273, 419, 467
MhlI GDGCHC 5 cut(s) 72, 251, 264, 349, 393
MluCI AATT 2 cut(s) 433, 529
MnlI CCTC 9 cut(s) 19, 34, 41, 109, 112, 116, 224, 290, 301
MroXI GAANNNNTTC 2 cut(s) 403, 516
MseI TTAA 2 cut(s) 243, 527
MspA1I CMGCKG 2 cut(s) 140, 286
NcoI CCATGG 1 cut(s) 393
NdeII GATC 5 cut(s) 220, 273, 419, 467, 475
NlaIII CATG 4 cut(s) 37, 160, 305, 397
NlaIV GGNNCC 5 cut(s) 93, 332, 421, 442, 490
NspI RCATGY 1 cut(s) 305
PaeR7I CTCGAG 1 cut(s) 348
PagI TCATGA 1 cut(s) 33
PciI ACATGT 1 cut(s) 301
PdmI GAANNNNTTC 2 cut(s) 403, 516
PfeI GAWTC 2 cut(s) 187, 210
PkrI GCNGC 2 cut(s) 139, 382
PscI ACATGT 1 cut(s) 301
Psp124BI GAGCTC 1 cut(s) 72
PspN4I GGNNCC 5 cut(s) 93, 332, 421, 442, 490
PspPI GGNCC 1 cut(s) 441
PsuI RGATCY 4 cut(s) 220, 273, 419, 467
PvuII CAGCTG 2 cut(s) 140, 286
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 2 cut(s) 243, 527
SatI GCNGC 2 cut(s) 138, 381
Sau3AI GATC 5 cut(s) 220, 273, 419, 467, 475
Sau96I GGNCC 1 cut(s) 441
SduI GDGCHC 5 cut(s) 72, 251, 264, 349, 393
SetI ASST 8 cut(s) 33, 72, 142, 234, 288, 342, 371, 497
SfcI CTRYAG 1 cut(s) 255
Sfr274I CTCGAG 1 cut(s) 348
SinI GGWCC 1 cut(s) 441
SlaI CTCGAG 1 cut(s) 348
SmiI ATTTAAAT 1 cut(s) 528
SmlI CTYRAG 2 cut(s) 215, 348
SmoI CTYRAG 2 cut(s) 215, 348
SpeI ACTAGT 2 cut(s) 401, 446
Sse9I AATT 2 cut(s) 433, 529
SsiI CCGC 1 cut(s) 80
SspMI CTAG 2 cut(s) 402, 447
SstI GAGCTC 1 cut(s) 72
StyI CCWWGG 1 cut(s) 393
SwaI ATTTAAAT 1 cut(s) 528
TaiI ACGT 2 cut(s) 234, 342
TaqI TCGA 3 cut(s) 11, 349, 426
TasI AATT 2 cut(s) 433, 529
TfiI GAWTC 2 cut(s) 187, 210
Tru1I TTAA 2 cut(s) 243, 527
Tru9I TTAA 2 cut(s) 243, 527
TscAI CASTG 1 cut(s) 393
TseI GCWGC 2 cut(s) 137, 380
TspDTI ATGAA 3 cut(s) 377, 525, 528
TspRI CASTG 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 441
XapI RAATTY 1 cut(s) 529
XceI RCATGY 1 cut(s) 305
XhoI CTCGAG 1 cut(s) 348
XmnI GAANNNNTTC 2 cut(s) 403, 516
XspI CTAG 2 cut(s) 402, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.