Rroxscaffold_1G00009920

Belongs to the eukaryotic ribosomal protein eS4 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
12415106 .. 12417086
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009920.1

Sequence Viewer

Length: 537 bp
ATGGATGTTGTTTCCATCCCAAAAACCAATGAGAACTTCCGTCTGCTCTACGACACCAAGGGTCGTTTCCGTCTCCATTCAATCAGGGATGAGGAGGCAAAGTTCAAGCTCTGCAAGGTTCGCTCAGTGCAGTTTGGGCAGAAGAACATCCCCTATATTAACACTTATGATGGGAGAACTATTCGCTACCCAGACCCACTTATTAAGGCCAATGATACTATCAAGCTGGACTTAGAGACCAACAAGATTATTGACTTCATTAAGTTTGATGTTGGGAATGTTGTCATGGTGACTGGTGGAAGGAATAGGGGACGTGTTGGAGTCATCAAGAACAGGGAAAAGCATAAGGGAAGCTTTGAGACCATCCACGTTCAGGATGCCGCAGGTCATGAGTTTGCCACCCGTCTTGGCAATGTGTTCACCATTGGCAAGGGTACAAAGCCTTGGGTGTCACTTCCCAAGGGCAAGGGTATCAAGCTCTCCATCATTGAGGAGGCAAGGAAACGACAAGCAGCACTCCAAACAGCTACTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

178

Amino Acids

20.14

Weight (kDa)

10.03

Isoelectric Point (pI)

15.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S4e PF00900 9 - 83 1.9e-34 Ribosomal family S4e
KOW PF00467 91 - 124 1e-06 KOW motif
40S_S4_C PF16121 126 - 171 1.2e-25 40S ribosomal protein S4 C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 374
AciI CCGC 1 cut(s) 381
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 1 cut(s) 373
AflIII ACRYGT 1 cut(s) 313
AgsI TTSAA 2 cut(s) 81, 106
AjiI CACGTC 1 cut(s) 314
AjuI GAANNNNNNNTTGG 4 cut(s) 20, 50, 52, 82
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 5 cut(s) 109, 226, 354, 478, 527
AluI AGCT 5 cut(s) 109, 226, 354, 478, 527
Alw26I GTCTC 3 cut(s) 77, 230, 353
AlwNI CAGNNNCTG 1 cut(s) 530
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 512
AsuHPI GGTGA 2 cut(s) 301, 412
BbvI GCAGC 1 cut(s) 524
BccI CCATC 4 cut(s) 23, 164, 371, 491
BcoDI GTCTC 3 cut(s) 77, 230, 353
BfuAI ACCTGC 1 cut(s) 374
BisI GCNGC 2 cut(s) 381, 513
BlsI GCNGC 2 cut(s) 382, 514
BmgBI CACGTC 1 cut(s) 314
BmsI GCATC 1 cut(s) 367
BsaI GGTCTC 2 cut(s) 230, 353
BsaJI CCNNGG 3 cut(s) 57, 443, 459
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 418
BseDI CCNNGG 3 cut(s) 57, 443, 459
BseGI GGATG 6 cut(s) 10, 15, 94, 147, 363, 382
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 2 cut(s) 107, 506
BseXI GCAGC 1 cut(s) 524
BsgI GTGCAG 1 cut(s) 149
BshFI GGCC 1 cut(s) 209
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 3 cut(s) 77, 230, 353
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 324
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 2 cut(s) 230, 353
BspACI CCGC 1 cut(s) 381
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 137
BspHI TCATGA 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 374
BspTNI GGTCTC 2 cut(s) 230, 353
BsrDI GCAATG 1 cut(s) 418
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 3 cut(s) 57, 443, 459
BssT1I CCWWGG 3 cut(s) 57, 443, 459
BstDEI CTNAG 2 cut(s) 124, 232
BstF5I GGATG 6 cut(s) 10, 15, 94, 147, 363, 382
BstMAI GTCTC 3 cut(s) 77, 230, 353
BstMWI GCNNNNNNNGC 2 cut(s) 120, 136
BstV1I GCAGC 1 cut(s) 524
BsuRI GGCC 1 cut(s) 209
BtrI CACGTC 1 cut(s) 314
BtsCI GGATG 6 cut(s) 10, 15, 94, 147, 363, 382
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 374
CaiI CAGNNNCTG 1 cut(s) 530
CciI TCATGA 1 cut(s) 388
Csp6I GTAC 1 cut(s) 435
CspCI CAANNNNNGTGG 2 cut(s) 388, 423
CviAII CATG 2 cut(s) 286, 389
CviJI RGCY 7 cut(s) 109, 209, 226, 354, 442, 478, 527
CviKI_1 RGCY 7 cut(s) 109, 209, 226, 354, 442, 478, 527
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 2 cut(s) 124, 232
Eco130I CCWWGG 3 cut(s) 57, 443, 459
Eco31I GGTCTC 2 cut(s) 230, 353
EcoT14I CCWWGG 3 cut(s) 57, 443, 459
ErhI CCWWGG 3 cut(s) 57, 443, 459
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 2 cut(s) 289, 392
FaiI YATR 5 cut(s) 156, 168, 287, 345, 390
FalI AAGNNNNNCTT 4 cut(s) 215, 247, 338, 370
FaqI GGGAC 1 cut(s) 324
FatI CATG 2 cut(s) 285, 388
Fnu4HI GCNGC 2 cut(s) 381, 513
FokI GGATG 6 cut(s) 2, 17, 101, 134, 350, 389
Fsp4HI GCNGC 2 cut(s) 381, 513
GluI GCNGC 2 cut(s) 381, 513
HaeIII GGCC 1 cut(s) 209
Hin1II CATG 2 cut(s) 289, 392
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 1 cut(s) 321
HphI GGTGA 2 cut(s) 301, 412
Hpy166II GTNNAC 1 cut(s) 420
Hpy188III TCNNGA 3 cut(s) 328, 374, 389
Hpy8I GTNNAC 1 cut(s) 420
HpyAV CCTTC 1 cut(s) 294
HpyCH4IV ACGT 2 cut(s) 313, 369
HpyCH4V TGCA 2 cut(s) 114, 130
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 136
HpyF3I CTNAG 2 cut(s) 124, 232
HpySE526I ACGT 2 cut(s) 313, 369
Hsp92II CATG 2 cut(s) 289, 392
LpnPI CCDG 7 cut(s) 70, 204, 212, 279, 319, 359, 369
Lsp1109I GCAGC 1 cut(s) 524
LweI GCATC 1 cut(s) 367
MaeII ACGT 2 cut(s) 313, 369
MaeIII GTNAC 2 cut(s) 289, 450
MboII GAAGA 1 cut(s) 154
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 4 cut(s) 85, 88, 484, 487
MseI TTAA 4 cut(s) 159, 204, 261, 535
MwoI GCNNNNNNNGC 2 cut(s) 120, 136
NlaIII CATG 2 cut(s) 289, 392
NmuCI GTSAC 2 cut(s) 289, 450
PagI TCATGA 1 cut(s) 388
PkrI GCNGC 2 cut(s) 382, 514
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
PstNI CAGNNNCTG 1 cut(s) 530
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
SaqAI TTAA 4 cut(s) 159, 204, 261, 535
SatI GCNGC 2 cut(s) 381, 513
SchI GAGTC 1 cut(s) 330
SetI ASST 9 cut(s) 111, 120, 228, 316, 356, 372, 388, 480, 529
SfaNI GCATC 1 cut(s) 367
SsiI CCGC 1 cut(s) 381
StyI CCWWGG 3 cut(s) 57, 443, 459
TaiI ACGT 2 cut(s) 316, 372
TauI GCSGC 1 cut(s) 383
Tru1I TTAA 4 cut(s) 159, 204, 261, 535
Tru9I TTAA 4 cut(s) 159, 204, 261, 535
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 2 cut(s) 289, 450
TseI GCWGC 1 cut(s) 512
Tsp45I GTSAC 2 cut(s) 289, 450
TspDTI ATGAA 1 cut(s) 247
TspGWI ACGGA 2 cut(s) 29, 59
TspRI CASTG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.