Prupe.6G051000_v2.0.a1

Belongs to the eukaryotic ribosomal protein eS4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001275
Physical Location & Seq
Reverse (-)
3577672 .. 3579910
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G051000.2

Sequence Viewer

Length: 801 bp
ATGGCTAGAGGATTGAAGAAGCATCTGAAGAGGCTCAATGCCCCAAAGCATTGGATGCTCGACAAACTTGGGGGTGCTTTTGCTCCCAAGCCATCATCTGGGCCTCACAAATCTAGGGAGTGCCTTCCACTGATCCTCATCCTGAGGAACAGGTTGAAGTATGCTCTCACATACCGTGAGGTCGTTTCCATTCTCATGCAGCGTCATATTTTGGTTGATGGCAAGGTTAGGACCGATAAGACCTACCCTTCTGGATTCATGGATGTTGTTTCCATCCCAAAAACAAATGAGAATTTCCGTCTGCTTTATGACACCAAGGGTCGGTTCCGGCTCCACTCAATTAGAGATGAGGAGTCTAAGCAGTTCAAGCTATGCAAGGTCCGGTCAGTGCAGTTTGGGCAGAAGGGCATTCCCTATATTAACACTTATGACGGGAGAACTATTCGCTACCCTGACCCCCTCATCAAGGCCAATGACACTATCAAGCTGGACTTGGAGACCAACAAGATCACTGACTTCATTAAGTTTGATGTTGGAAATGTTGTCATGGTGACTGGTGGAAGAAACAGAGGTCGTGTTGGAGTCATTAAGAACAGGGAGAAGCATAAGGGAAGCTTTGAGACCATCCACGTTCAGGATGCCACTGGTCACGAGTTTGCTACTCGGCTTGGTAATGTGTTCACCATTGGCAAGGGTACAAAGCCTTGGGTGTCTCTTCCCAAGGGCAAAGGTATCAAGCTGACCATCCTTGAAGAGGCAAAGAAGCGACAAGCAGCCGCCCAAGCAGCTGCTACTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
40S_S4_C KOW RS4NT Ribosomal_S4e S4

Protein Analysis

267

Amino Acids

30.08

Weight (kDa)

10.25

Isoelectric Point (pI)

24.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 98
AciI CCGC 1 cut(s) 777
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 292
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 1 cut(s) 697
AfiI CCNNNNNNNGG 5 cut(s) 98, 321, 466, 634, 754
AgsI TTSAA 4 cut(s) 16, 157, 367, 752
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AluBI AGCT 5 cut(s) 370, 487, 615, 739, 788
AluI AGCT 5 cut(s) 370, 487, 615, 739, 788
Alw26I GTCTC 3 cut(s) 491, 614, 717
AlwI GGATC 1 cut(s) 127
AoxI GGCC 2 cut(s) 101, 468
ApeKI GCWGC 4 cut(s) 199, 773, 785, 788
ApoI RAATTY 1 cut(s) 292
AspS9I GGNCC 3 cut(s) 101, 231, 379
AsuHPI GGTGA 2 cut(s) 562, 673
AvaII GGWCC 2 cut(s) 231, 379
AxyI CCTNAGG 1 cut(s) 143
BauI CACGAG 1 cut(s) 650
BbvI GCAGC 4 cut(s) 211, 775, 785, 797
BccI CCATC 5 cut(s) 100, 212, 281, 632, 752
BcoDI GTCTC 3 cut(s) 491, 614, 717
BfaI CTAG 2 cut(s) 6, 114
BisI GCNGC 5 cut(s) 200, 774, 777, 786, 789
BlsI GCNGC 5 cut(s) 201, 775, 778, 787, 790
Bme18I GGWCC 2 cut(s) 231, 379
BmgT120I GGNCC 3 cut(s) 101, 231, 379
BmiI GGNNCC 2 cut(s) 326, 332
BmsI GCATC 3 cut(s) 31, 45, 628
BsaBI GATNNNNATC 1 cut(s) 137
BsaI GGTCTC 2 cut(s) 491, 614
BsaJI CCNNGG 3 cut(s) 315, 704, 720
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 5 cut(s) 98, 321, 466, 634, 754
Bse1I ACTGG 2 cut(s) 559, 649
Bse21I CCTNAGG 1 cut(s) 143
Bse8I GATNNNNATC 1 cut(s) 137
BseDI CCNNGG 3 cut(s) 315, 704, 720
BseGI GGATG 7 cut(s) 60, 138, 268, 273, 624, 643, 744
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 5 cut(s) 98, 321, 466, 634, 754
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 559, 649
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 4 cut(s) 211, 775, 785, 797
BsgI GTGCAG 1 cut(s) 410
BshFI GGCC 2 cut(s) 103, 470
BsiSI CCGG 2 cut(s) 328, 382
BslI CCNNNNNNNGG 5 cut(s) 98, 321, 466, 634, 754
BsmAI GTCTC 3 cut(s) 491, 614, 717
BsmI GAATGC 1 cut(s) 408
BsnI GGCC 2 cut(s) 103, 470
Bso31I GGTCTC 2 cut(s) 491, 614
Bsp143I GATC 2 cut(s) 132, 507
BspACI CCGC 1 cut(s) 777
BspANI GGCC 2 cut(s) 103, 470
BspCNI CTCAG 1 cut(s) 135
BspLI GGNNCC 2 cut(s) 326, 332
BspPI GGATC 1 cut(s) 127
BspTNI GGTCTC 2 cut(s) 491, 614
BsrI ACTGG 2 cut(s) 559, 649
BssECI CCNNGG 3 cut(s) 315, 704, 720
BssMI GATC 2 cut(s) 132, 507
BssSI CACGAG 1 cut(s) 650
BssT1I CCWWGG 3 cut(s) 315, 704, 720
Bst2BI CACGAG 1 cut(s) 650
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 3 cut(s) 23, 720, 747
BstAPI GCANNNNNTGC 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 143, 357
BstENI CCTNNNNNAGG 2 cut(s) 464, 752
BstF5I GGATG 7 cut(s) 60, 138, 268, 273, 624, 643, 744
BstKTI GATC 2 cut(s) 135, 510
BstMAI GTCTC 3 cut(s) 491, 614, 717
BstMBI GATC 2 cut(s) 132, 507
BstMWI GCNNNNNNNGC 6 cut(s) 55, 367, 397, 782, 785, 794
BstV1I GCAGC 4 cut(s) 211, 775, 785, 797
BstXI CCANNNNNNTGG 1 cut(s) 51
Bsu36I CCTNAGG 1 cut(s) 143
BsuRI GGCC 2 cut(s) 103, 470
BtsCI GGATG 7 cut(s) 60, 138, 268, 273, 624, 643, 744
BtsIMutI CAGTG 4 cut(s) 128, 393, 510, 642
Cfr13I GGNCC 3 cut(s) 101, 231, 379
CseI GACGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 696
CviAII CATG 3 cut(s) 196, 259, 547
CviQI GTAC 1 cut(s) 696
DdeI CTNAG 2 cut(s) 143, 357
DpnI GATC 2 cut(s) 134, 509
DpnII GATC 2 cut(s) 132, 507
Eam1104I CTCTTC 3 cut(s) 23, 720, 747
EarI CTCTTC 3 cut(s) 23, 720, 747
Eco130I CCWWGG 3 cut(s) 315, 704, 720
Eco31I GGTCTC 2 cut(s) 491, 614
Eco47I GGWCC 2 cut(s) 231, 379
Eco57I CTGAAG 1 cut(s) 47
Eco81I CCTNAGG 1 cut(s) 143
EcoNI CCTNNNNNAGG 2 cut(s) 464, 752
EcoT14I CCWWGG 3 cut(s) 315, 704, 720
ErhI CCWWGG 3 cut(s) 315, 704, 720
FaeI CATG 3 cut(s) 199, 262, 550
FalI AAGNNNNNCTT 4 cut(s) 476, 508, 599, 631
FatI CATG 3 cut(s) 195, 258, 546
Fnu4HI GCNGC 5 cut(s) 200, 774, 777, 786, 789
FokI GGATG 7 cut(s) 67, 125, 260, 275, 611, 650, 731
Fsp4HI GCNGC 5 cut(s) 200, 774, 777, 786, 789
FspBI CTAG 2 cut(s) 6, 114
GluI GCNGC 5 cut(s) 200, 774, 777, 786, 789
HaeIII GGCC 2 cut(s) 103, 470
HapII CCGG 2 cut(s) 328, 382
HgaI GACGC 1 cut(s) 191
Hin1II CATG 3 cut(s) 199, 262, 550
HindIII AAGCTT 1 cut(s) 613
HinfI GANTC 3 cut(s) 255, 353, 582
HpaII CCGG 2 cut(s) 328, 382
HphI GGTGA 2 cut(s) 562, 673
Hpy166II GTNNAC 1 cut(s) 681
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 4 cut(s) 142, 252, 635, 650
Hpy8I GTNNAC 1 cut(s) 681
HpyAV CCTTC 3 cut(s) 134, 258, 397
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 3 cut(s) 199, 375, 391
HpyF10VI GCNNNNNNNGC 6 cut(s) 55, 367, 397, 782, 785, 794
HpyF3I CTNAG 2 cut(s) 143, 357
HpySE526I ACGT 1 cut(s) 630
Hsp92II CATG 3 cut(s) 199, 262, 550
Kzo9I GATC 2 cut(s) 132, 507
LmnI GCTCC 2 cut(s) 88, 336
Lsp1109I GCAGC 4 cut(s) 211, 775, 785, 797
LweI GCATC 3 cut(s) 31, 45, 628
MaeI CTAG 2 cut(s) 6, 114
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 2 cut(s) 550, 647
MalI GATC 2 cut(s) 134, 509
MboI GATC 2 cut(s) 132, 507
MboII GAAGA 5 cut(s) 28, 40, 573, 707, 764
MluCI AATT 2 cut(s) 292, 339
MlyI GAGTC 2 cut(s) 362, 591
MmeI TCCRAC 2 cut(s) 514, 559
MnlI CCTC 9 cut(s) 24, 114, 138, 146, 172, 343, 470, 563, 748
MseI TTAA 4 cut(s) 420, 522, 588, 799
MslI CAYNNNNRTG 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 788
MspI CCGG 2 cut(s) 328, 382
Mva1269I GAATGC 1 cut(s) 408
MwoI GCNNNNNNNGC 6 cut(s) 55, 367, 397, 782, 785, 794
NdeII GATC 2 cut(s) 132, 507
NlaIII CATG 3 cut(s) 199, 262, 550
NlaIV GGNNCC 2 cut(s) 326, 332
NmeAIII GCCGAG 1 cut(s) 643
NmuCI GTSAC 2 cut(s) 550, 647
PctI GAATGC 1 cut(s) 408
PfeI GAWTC 1 cut(s) 255
PflMI CCANNNNNTGG 1 cut(s) 98
PkrI GCNGC 5 cut(s) 201, 775, 778, 787, 790
PleI GAGTC 2 cut(s) 361, 590
PpsI GAGTC 2 cut(s) 361, 590
PspN4I GGNNCC 2 cut(s) 326, 332
PspPI GGNCC 3 cut(s) 101, 231, 379
PvuII CAGCTG 1 cut(s) 788
RsaI GTAC 1 cut(s) 697
RsaNI GTAC 1 cut(s) 696
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 4 cut(s) 420, 522, 588, 799
SatI GCNGC 5 cut(s) 200, 774, 777, 786, 789
Sau3AI GATC 2 cut(s) 132, 507
Sau96I GGNCC 3 cut(s) 101, 231, 379
SchI GAGTC 2 cut(s) 362, 591
SfaNI GCATC 3 cut(s) 31, 45, 628
SinI GGWCC 2 cut(s) 231, 379
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 2 cut(s) 292, 339
SsiI CCGC 1 cut(s) 777
SspMI CTAG 2 cut(s) 6, 114
StyI CCWWGG 3 cut(s) 315, 704, 720
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 633
TaqI TCGA 1 cut(s) 60
TaqII GACCGA 1 cut(s) 248
TasI AATT 2 cut(s) 292, 339
TauI GCSGC 1 cut(s) 779
TfiI GAWTC 1 cut(s) 255
Tru1I TTAA 4 cut(s) 420, 522, 588, 799
Tru9I TTAA 4 cut(s) 420, 522, 588, 799
TscAI CASTG 4 cut(s) 135, 393, 517, 649
TseFI GTSAC 2 cut(s) 550, 647
TseI GCWGC 4 cut(s) 199, 773, 785, 788
Tsp45I GTSAC 2 cut(s) 550, 647
TspDTI ATGAA 2 cut(s) 247, 508
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 4 cut(s) 135, 393, 517, 649
Van91I CCANNNNNTGG 1 cut(s) 98
VpaK11BI GGWCC 2 cut(s) 231, 379
XagI CCTNNNNNAGG 2 cut(s) 464, 752
XapI RAATTY 1 cut(s) 292
XspI CTAG 2 cut(s) 6, 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.