Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Reverse (-)

9553797 .. 9556167

Gene Structure 2371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCTGAGAATCTTGCTTGTGGTGAAACCAGCGAGTCATGGATCATTGACAACGACGATGATGATATCAACTATGGCGGCGGATTTACGAACGAGATTGATTACAATCACCAACTTTTTGCTAAAGACGACAACTTTGGCGGCAACGGATCAATTCCGATGATGGGTTCTTCTTCATCGTCCTTGAGTGAAGACAGAATCAAAGAGATGTTGGTGAGAGAGATTGAGTTTTGCCCTGGAACTGATTATGTTAAGAGATTGCTTTCTGGTGATTTGGATTTGTCTGTTCGAAACCAAGCTCTTGATTGGATTCTAAAGGTTTGTGCTCATTACCATTTTGGACATCTGTGCATATGCCTATCCATGAACTACTTGGATCGGTTCTTAACATCCTATGAATTGCCGAAAGACAAGGATTGGGCTGCTCAGTTACTAGCTGTGTCTTGCTTATCATTAGCATCCAAAATGGAAGAAACTGATGTGCCTCACATTGTTGATTTACAGGTGGAAGATCCCAAGTTTGTTTTTGAGGCCAAAACAATAAAAAGGATGGAGCTTTTGGTTGTCACCACTTTGAATTGGAGATTGCAAGCTCTAACTCCATTCTCCTTCATTGATTATTTCGTTGACAAGATCAGTGGTCACGTGTCGGAGAATTTGATCTATAGATCGTCAAGATTCATCTTAAACACCACCAAAGCAATTGAATTCTTAGACTTCAGGCCTTCTGAGATAGCTGCAGCTGCTGCAGTGTCTGTTTCCATTTCAGGAGAAACAGAATGCATTGATGAGGAAAAGGCACTGTCTAGTCTCATATATGTAAAACAGGAGAGGGTGAAGAGATGTTTGAATCTGATGAGAAGTCTCACTGGGGAGGAGAATGTGCGGGGAACTAGTTTATCGCAGGAGCAGGCGCGAGTTGCGGTAAGAGCTGTACCTGCAAGTCCAGTTGGAGTGTTGGAAGCAACATGTTTGAGCTATAGGAGTGAAGAGAGAACAGTTGAGTCATGTACAAATTCCTCACAGAGTAGTCCAGACAACAACAACAACAACAACAACAGCAACAAGAGGAGGAGAAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010374 GO:0010440 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

361

Amino Acids

40.58

Weight (kDa)

4.96

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	67 - 196	2.7e-31	Cyclin, N-terminal domain
Cyclin_C	PF02984	200 - 294	9.8e-08	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	946
AccII	CGCG	1 cut(s)	916
AciI	CCGC	5 cut(s)	78, 81, 141, 886, 923
AclWI	GGATC	4 cut(s)	50, 157, 384, 506
AcsI	RAATTY	3 cut(s)	655, 707, 1015
AcuI	CTGAAG	1 cut(s)	703
AcvI	CACGTG	1 cut(s)	646
AfaI	GTAC	2 cut(s)	936, 1012
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflIII	ACRYGT	2 cut(s)	645, 968
AgsI	TTSAA	3 cut(s)	577, 707, 850
AhlI	ACTAGT	1 cut(s)	893
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	8 cut(s)	299, 437, 556, 593, 737, 743, 932, 978
AluI	AGCT	8 cut(s)	299, 437, 556, 593, 737, 743, 932, 978
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	2 cut(s)	815, 869
AlwI	GGATC	4 cut(s)	50, 157, 384, 506
AlwNI	CAGNNNCTG	2 cut(s)	746, 755
AoxI	GGCC	2 cut(s)	531, 722
ApeKI	GCWGC	5 cut(s)	422, 737, 740, 743, 746
ApoI	RAATTY	3 cut(s)	655, 707, 1015
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspLEI	GCGC	1 cut(s)	916
AsuHPI	GGTGA	6 cut(s)	35, 101, 226, 281, 559, 847
AsuII	TTCGAA	1 cut(s)	289
BbrPI	CACGTG	1 cut(s)	646
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	5 cut(s)	409, 724, 730, 733, 752
BccI	CCATC	2 cut(s)	157, 544
BciT130I	CCWGG	1 cut(s)	237
BcoDI	GTCTC	2 cut(s)	815, 869
BcuI	ACTAGT	1 cut(s)	893
BfaI	CTAG	3 cut(s)	434, 807, 894
BfmI	CTRYAG	4 cut(s)	664, 738, 747, 979
BfuAI	ACCTGC	1 cut(s)	946
BisI	GCNGC	7 cut(s)	79, 142, 423, 738, 741, 744, 747
BlsI	GCNGC	7 cut(s)	80, 143, 424, 739, 742, 745, 748
Bme1390I	CCNGG	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	237
BmrI	ACTGGG	1 cut(s)	879
BmsI	GCATC	1 cut(s)	467
BmuI	ACTGGG	1 cut(s)	879
BpiI	GAAGAC	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	205
BsaAI	YACGTR	1 cut(s)	646
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	874, 947
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	3 cut(s)	389, 458, 555
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	2 cut(s)	440, 720
BseNI	ACTGG	2 cut(s)	874, 947
BseRI	GAGGAG	2 cut(s)	890, 1084
BseXI	GCAGC	5 cut(s)	409, 724, 730, 733, 752
Bsh1236I	CGCG	1 cut(s)	916
BshFI	GGCC	2 cut(s)	533, 724
BsiHKAI	GWGCWC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	815, 869
BsmI	GAATGC	1 cut(s)	785
BsnI	GGCC	2 cut(s)	533, 724
Bsp119I	TTCGAA	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp1407I	TGTACA	1 cut(s)	1010
Bsp143I	GATC	7 cut(s)	42, 149, 376, 511, 633, 660, 668
BspACI	CCGC	5 cut(s)	78, 81, 141, 886, 923
BspANI	GGCC	2 cut(s)	533, 724
BspCNI	CTCAG	2 cut(s)	439, 721
BspFNI	CGCG	1 cut(s)	916
BspMAI	CTGCAG	2 cut(s)	742, 751
BspMI	ACCTGC	1 cut(s)	946
BspPI	GGATC	4 cut(s)	50, 157, 384, 506
BspT104I	TTCGAA	1 cut(s)	289
BsrGI	TGTACA	1 cut(s)	1010
BsrI	ACTGG	2 cut(s)	874, 947
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	7 cut(s)	42, 149, 376, 511, 633, 660, 668
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	804, 1000
Bst6I	CTCTTC	2 cut(s)	833, 984
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstAUI	TGTACA	1 cut(s)	1010
BstBAI	YACGTR	1 cut(s)	646
BstBI	TTCGAA	1 cut(s)	289
BstC8I	GCNNGC	2 cut(s)	591, 912
BstDEI	CTNAG	4 cut(s)	6, 426, 712, 729
BstF5I	GGATG	3 cut(s)	389, 458, 555
BstFNI	CGCG	1 cut(s)	916
BstHHI	GCGC	1 cut(s)	916
BstKTI	GATC	7 cut(s)	45, 152, 379, 514, 636, 663, 671
BstMAI	GTCTC	2 cut(s)	815, 869
BstMBI	GATC	7 cut(s)	42, 149, 376, 511, 633, 660, 668
BstMWI	GCNNNNNNNGC	5 cut(s)	743, 746, 920, 929, 938
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	972
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	4 cut(s)	664, 738, 747, 979
BstUI	CGCG	1 cut(s)	916
BstV1I	GCAGC	5 cut(s)	409, 724, 730, 733, 752
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	533, 724
BtsCI	GGATG	3 cut(s)	389, 458, 555
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	4 cut(s)	643, 756, 800, 867
BveI	ACCTGC	1 cut(s)	946
Cac8I	GCNNGC	2 cut(s)	591, 912
CaiI	CAGNNNCTG	2 cut(s)	746, 755
CfoI	GCGC	1 cut(s)	916
Csp6I	GTAC	2 cut(s)	935, 1011
CspCI	CAANNNNNGTGG	2 cut(s)	619, 654
CviAII	CATG	4 cut(s)	39, 364, 969, 1008
CviQI	GTAC	2 cut(s)	935, 1011
DdeI	CTNAG	4 cut(s)	6, 426, 712, 729
DpnI	GATC	7 cut(s)	44, 151, 378, 513, 635, 662, 670
DpnII	GATC	7 cut(s)	42, 149, 376, 511, 633, 660, 668
Eam1104I	CTCTTC	2 cut(s)	833, 984
EarI	CTCTTC	2 cut(s)	833, 984
EciI	GGCGGA	1 cut(s)	96
Eco147I	AGGCCT	1 cut(s)	724
Eco32I	GATATC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	703
Eco72I	CACGTG	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	707
EcoRII	CCWGG	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	67
EcoT22I	ATGCAT	1 cut(s)	785
FaeI	CATG	4 cut(s)	42, 367, 972, 1011
FatI	CATG	4 cut(s)	38, 363, 968, 1007
FauI	CCCGC	1 cut(s)	879
FauNDI	CATATG	1 cut(s)	353
Fnu4HI	GCNGC	7 cut(s)	79, 142, 423, 738, 741, 744, 747
FokI	GGATG	3 cut(s)	376, 445, 562
Fsp4HI	GCNGC	7 cut(s)	79, 142, 423, 738, 741, 744, 747
FspBI	CTAG	3 cut(s)	434, 807, 894
GlaI	GCGC	1 cut(s)	915
GluI	GCNGC	7 cut(s)	79, 142, 423, 738, 741, 744, 747
HaeIII	GGCC	2 cut(s)	533, 724
HhaI	GCGC	1 cut(s)	916
Hin1II	CATG	4 cut(s)	42, 367, 972, 1011
Hin6I	GCGC	1 cut(s)	914
HinP1I	GCGC	1 cut(s)	914
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	7 cut(s)	10, 35, 198, 310, 678, 850, 1004
HphI	GGTGA	6 cut(s)	35, 101, 226, 281, 559, 847
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	4 cut(s)	159, 652, 730, 855
Hpy188III	TCNNGA	4 cut(s)	302, 675, 768, 1034
Hpy8I	GTNNAC	1 cut(s)	628
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	619, 735
HpyCH4III	ACNGT	2 cut(s)	804, 1000
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	6 cut(s)	351, 589, 740, 749, 783, 941
HpyF10VI	GCNNNNNNNGC	5 cut(s)	743, 746, 920, 929, 938
HpyF3I	CTNAG	4 cut(s)	6, 426, 712, 729
HpySE526I	ACGT	1 cut(s)	645
Hsp92II	CATG	4 cut(s)	42, 367, 972, 1011
HspAI	GCGC	1 cut(s)	914
Kzo9I	GATC	7 cut(s)	42, 149, 376, 511, 633, 660, 668
LmnI	GCTCC	2 cut(s)	553, 907
Lsp1109I	GCAGC	5 cut(s)	409, 724, 730, 733, 752
LweI	GCATC	1 cut(s)	467
MaeI	CTAG	3 cut(s)	434, 807, 894
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	3 cut(s)	429, 565, 641
MalI	GATC	7 cut(s)	44, 151, 378, 513, 635, 662, 670
MboI	GATC	7 cut(s)	42, 149, 376, 511, 633, 660, 668
MboII	GAAGA	7 cut(s)	162, 165, 203, 482, 521, 850, 1001
MfeI	CAATTG	1 cut(s)	702
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	7 cut(s)	153, 398, 577, 655, 702, 707, 1015
MlyI	GAGTC	2 cut(s)	44, 1013
MmeI	TCCRAC	3 cut(s)	630, 931, 939
MnlI	CCTC	8 cut(s)	495, 523, 784, 825, 868, 1030, 1062, 1065
Mph1103I	ATGCAT	1 cut(s)	785
MseI	TTAA	3 cut(s)	252, 386, 686
MspA1I	CMGCKG	1 cut(s)	743
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	785
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	916
MwoI	GCNNNNNNNGC	5 cut(s)	743, 746, 920, 929, 938
NdeI	CATATG	1 cut(s)	353
NdeII	GATC	7 cut(s)	42, 149, 376, 511, 633, 660, 668
NlaIII	CATG	4 cut(s)	42, 367, 972, 1011
NmuCI	GTSAC	2 cut(s)	565, 641
NsiI	ATGCAT	1 cut(s)	785
NspI	RCATGY	1 cut(s)	972
NspV	TTCGAA	1 cut(s)	289
PceI	AGGCCT	1 cut(s)	724
PciI	ACATGT	1 cut(s)	968
PctI	GAATGC	1 cut(s)	785
PfeI	GAWTC	5 cut(s)	10, 198, 310, 678, 850
PkrI	GCNGC	7 cut(s)	80, 143, 424, 739, 742, 745, 748
PleI	GAGTC	2 cut(s)	43, 1012
PmaCI	CACGTG	1 cut(s)	646
PmlI	CACGTG	1 cut(s)	646
PpsI	GAGTC	2 cut(s)	43, 1012
Ppu21I	YACGTR	1 cut(s)	646
PscI	ACATGT	1 cut(s)	968
Psp6I	CCWGG	1 cut(s)	235
PspCI	CACGTG	1 cut(s)	646
PspGI	CCWGG	1 cut(s)	235
PstI	CTGCAG	2 cut(s)	742, 751
PstNI	CAGNNNCTG	2 cut(s)	746, 755
PsuI	RGATCY	1 cut(s)	511
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	2 cut(s)	936, 1012
RsaNI	GTAC	2 cut(s)	935, 1011
SaqAI	TTAA	3 cut(s)	252, 386, 686
SatI	GCNGC	7 cut(s)	79, 142, 423, 738, 741, 744, 747
Sau3AI	GATC	7 cut(s)	42, 149, 376, 511, 633, 660, 668
SchI	GAGTC	2 cut(s)	44, 1013
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	328
SfaNI	GCATC	1 cut(s)	467
SfcI	CTRYAG	4 cut(s)	664, 738, 747, 979
SfuI	TTCGAA	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SpeI	ACTAGT	1 cut(s)	893
Sse9I	AATT	7 cut(s)	153, 398, 577, 655, 702, 707, 1015
SseBI	AGGCCT	1 cut(s)	724
SsiI	CCGC	5 cut(s)	78, 81, 141, 886, 923
SspMI	CTAG	3 cut(s)	434, 807, 894
StuI	AGGCCT	1 cut(s)	724
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	804, 1000
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	1 cut(s)	289
TasI	AATT	7 cut(s)	153, 398, 577, 655, 702, 707, 1015
TatI	WGTACW	1 cut(s)	1010
TauI	GCSGC	2 cut(s)	81, 144
TfiI	GAWTC	5 cut(s)	10, 198, 310, 678, 850
Tru1I	TTAA	3 cut(s)	252, 386, 686
Tru9I	TTAA	3 cut(s)	252, 386, 686
TscAI	CASTG	4 cut(s)	643, 756, 807, 874
TseFI	GTSAC	2 cut(s)	565, 641
TseI	GCWGC	5 cut(s)	422, 737, 740, 743, 746
Tsp45I	GTSAC	2 cut(s)	565, 641
TspDTI	ATGAA	5 cut(s)	165, 380, 411, 601, 670
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	4 cut(s)	643, 756, 807, 874
XapI	RAATTY	3 cut(s)	655, 707, 1015
XceI	RCATGY	1 cut(s)	972
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XspI	CTAG	3 cut(s)	434, 807, 894
Zsp2I	ATGCAT	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.