Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Forward (+)

22085377 .. 22087522

Gene Structure 2146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G017750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTTGATCGTGTTGGTTTTCCTTCTTTGTTTGCCTACTTTTCCTATGTTCCTTTGGGCTCGTGCACATTACAGTTTTGGACCATTGAGTGTGTGTCTATCTATGAACTACTGGGATCGCTTCCTTTCCGTTCATCCATTGCCTAAAGATAAAACTTGGGCAGTGCAACTGCTAGCTGTGGCTTGTTTATCACTGGCCTCCAAAATGGAGGAGACTGATGTACCACAGACAGTGGATTTACAGGTTGGAGATCCCAAGTATGTATTTGAAGCTAAAACTATAATGAGAATGGAGCTTCTTGTGCTAAGCACCCTAAAGTGGAGAATGCAAGCTTATACTCCATGCTCTTTCATTGATTACTTCCTCAGCAAGATCAGTGATGATCAACATGCACCGACATCATCCATCAGTAGATCAGTGCAACTCATATTGAGCATAATGAGAGGTATTGACTTCTTGGAATTCAGGCCTTCTGAAATTGCTGCAGCAGTTGCACTTTGTATTTCAGGAGAAGTAATGCAAGGAGTGGACATGGAGAAGGCCATTTCTTGTTTCATACATGTAGAAAAGGGAAGAGTGTTGAAGTGTGTTGAACTGATCAAAGATTTGTCATTGATCAGTGGCTCTGCTAATAGAGGAAGCGCTTCAGCTTCATCCGTGCCCCAAAGTCCAGTTGGGGTGTTGGATGCTGCGTGCTTGAGCTATAAAAGTGACGAATTTACAGTTGGGTCATGTGCAAATTCTTCACATTCTAGTCCAGACATTAAGAGGAGAAAACCAGACAATCCATCTGAAAAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010374 GO:0010440 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

267

Amino Acids

29.51

Weight (kDa)

6.52

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	22 - 109	3.1e-21	Cyclin, N-terminal domain
Cyclin_C	PF02984	113 - 208	4.7e-11	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	123, 245
AcsI	RAATTY	3 cut(s)	461, 716, 739
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	1 cut(s)	222
AfeI	AGCGCT	1 cut(s)	643
AfiI	CCNNNNNNNGG	1 cut(s)	318
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	3 cut(s)	269, 583, 593
AjuI	GAANNNNNNNTTGG	2 cut(s)	708, 740
AluBI	AGCT	6 cut(s)	176, 272, 295, 332, 650, 702
AluI	AGCT	6 cut(s)	176, 272, 295, 332, 650, 702
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	1 cut(s)	206
Alw44I	GTGCAC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	123, 245
Aor51HI	AGCGCT	1 cut(s)	643
AoxI	GGCC	3 cut(s)	195, 467, 540
ApaLI	GTGCAC	1 cut(s)	63
ApeKI	GCWGC	3 cut(s)	482, 485, 689
ApoI	RAATTY	3 cut(s)	461, 716, 739
Asp700I	GAANNNNTTC	1 cut(s)	643
AspLEI	GCGC	1 cut(s)	644
AspS9I	GGNCC	1 cut(s)	80
AsuNHI	GCTAGC	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	80
BaeGI	GKGCMC	2 cut(s)	67, 663
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BanII	GRGCYC	1 cut(s)	61
BauI	CACGAG	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	67
BbvCI	CCTCAGC	1 cut(s)	365
BbvI	GCAGC	3 cut(s)	469, 497, 676
BccI	CCATC	2 cut(s)	413, 796
BclI	TGATCA	3 cut(s)	382, 597, 615
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	173, 753
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	645
BisI	GCNGC	3 cut(s)	483, 486, 690
BlpI	GCTNAGC	1 cut(s)	305
BlsI	GCNGC	3 cut(s)	484, 487, 691
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	676
BmtI	GCTAGC	1 cut(s)	176
BmuI	ACTGGG	1 cut(s)	121
Bpu10I	CCTNAGC	1 cut(s)	365
Bpu1102I	GCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	718
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse1I	ACTGG	3 cut(s)	116, 198, 671
Bse3DI	GCAATG	1 cut(s)	137
BseGI	GGATG	4 cut(s)	133, 401, 653, 691
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	3 cut(s)	116, 198, 671
BseRI	GAGGAG	2 cut(s)	224, 784
BseSI	GKGCMC	2 cut(s)	67, 663
BseXI	GCAGC	3 cut(s)	469, 497, 676
BshFI	GGCC	3 cut(s)	197, 469, 542
BsiHKAI	GWGCWC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmAI	GTCTC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	3 cut(s)	197, 469, 542
Bsp1286I	GDGCHC	3 cut(s)	61, 67, 663
Bsp143I	GATC	8 cut(s)	6, 115, 250, 372, 382, 413, 597, 615
Bsp1720I	GCTNAGC	1 cut(s)	305
BspANI	GGCC	3 cut(s)	197, 469, 542
BspCNI	CTCAG	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	800
BspMAI	CTGCAG	1 cut(s)	487
BspOI	GCTAGC	1 cut(s)	176
BspPI	GGATC	2 cut(s)	123, 245
BsrDI	GCAATG	1 cut(s)	137
BsrI	ACTGG	3 cut(s)	116, 198, 671
BssMI	GATC	8 cut(s)	6, 115, 250, 372, 382, 413, 597, 615
BssSI	CACGAG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	74, 232, 724
Bst6I	CTCTTC	1 cut(s)	568
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstC8I	GCNNGC	3 cut(s)	174, 330, 694
BstDEI	CTNAG	2 cut(s)	305, 365
BstF5I	GGATG	4 cut(s)	133, 401, 653, 691
BstH2I	RGCGCY	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	644
BstKTI	GATC	8 cut(s)	9, 118, 253, 375, 385, 416, 600, 618
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	8 cut(s)	6, 115, 250, 372, 382, 413, 597, 615
BstMWI	GCNNNNNNNGC	2 cut(s)	301, 491
BstNSI	RCATGY	2 cut(s)	392, 563
BstSFI	CTRYAG	1 cut(s)	483
BstSLI	GKGCMC	2 cut(s)	67, 663
BstV1I	GCAGC	3 cut(s)	469, 497, 676
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	3 cut(s)	197, 469, 542
BtsCI	GGATG	4 cut(s)	133, 401, 653, 691
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	6 cut(s)	168, 191, 237, 382, 423, 625
Cac8I	GCNNGC	3 cut(s)	174, 330, 694
CciI	TCATGA	1 cut(s)	800
CfoI	GCGC	1 cut(s)	644
Cfr13I	GGNCC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	6 cut(s)	342, 389, 532, 560, 732, 801
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	305, 365
DpnI	GATC	8 cut(s)	8, 117, 252, 374, 384, 415, 599, 617
DpnII	GATC	8 cut(s)	6, 115, 250, 372, 382, 413, 597, 615
Eam1104I	CTCTTC	1 cut(s)	568
EarI	CTCTTC	1 cut(s)	568
Eco147I	AGGCCT	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	80
Eco47III	AGCGCT	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	630
EcoRI	GAATTC	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	61
FaeI	CATG	6 cut(s)	345, 392, 535, 563, 735, 804
FatI	CATG	6 cut(s)	341, 388, 531, 559, 731, 800
FbaI	TGATCA	3 cut(s)	382, 597, 615
Fnu4HI	GCNGC	3 cut(s)	483, 486, 690
FokI	GGATG	4 cut(s)	120, 388, 640, 698
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	3 cut(s)	483, 486, 690
FspBI	CTAG	2 cut(s)	173, 753
GlaI	GCGC	1 cut(s)	643
GluI	GCNGC	3 cut(s)	483, 486, 690
HaeII	RGCGCY	1 cut(s)	645
HaeIII	GGCC	3 cut(s)	197, 469, 542
HhaI	GCGC	1 cut(s)	644
Hin1II	CATG	6 cut(s)	345, 392, 535, 563, 735, 804
Hin6I	GCGC	1 cut(s)	642
HinP1I	GCGC	1 cut(s)	642
HindIII	AAGCTT	1 cut(s)	330
Hpy166II	GTNNAC	2 cut(s)	65, 529
Hpy188I	TCNGA	2 cut(s)	475, 793
Hpy188III	TCNNGA	3 cut(s)	507, 758, 801
Hpy8I	GTNNAC	2 cut(s)	65, 529
HpyAV	CCTTC	3 cut(s)	32, 480, 532
HpyCH4III	ACNGT	3 cut(s)	74, 232, 724
HpyCH4V	TGCA	9 cut(s)	65, 166, 328, 392, 421, 485, 494, 520, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	301, 491
HpyF3I	CTNAG	2 cut(s)	305, 365
Hsp92II	CATG	6 cut(s)	345, 392, 535, 563, 735, 804
HspAI	GCGC	1 cut(s)	642
Ksp22I	TGATCA	3 cut(s)	382, 597, 615
Kzo9I	GATC	8 cut(s)	6, 115, 250, 372, 382, 413, 597, 615
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	8 cut(s)	97, 179, 227, 451, 492, 684, 771, 792
Lsp1109I	GCAGC	3 cut(s)	469, 497, 676
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	2 cut(s)	173, 753
MaeIII	GTNAC	1 cut(s)	710
MalI	GATC	8 cut(s)	8, 117, 252, 374, 384, 415, 599, 617
MboI	GATC	8 cut(s)	6, 115, 250, 372, 382, 413, 597, 615
MboII	GAAGA	2 cut(s)	585, 735
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	3 cut(s)	61, 67, 663
MluCI	AATT	4 cut(s)	461, 477, 716, 739
MmeI	TCCRAC	2 cut(s)	226, 663
MnlI	CCTC	6 cut(s)	202, 208, 374, 437, 629, 762
MroXI	GAANNNNTTC	1 cut(s)	643
MseI	TTAA	1 cut(s)	765
Mva1269I	GAATGC	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	301, 491
NdeII	GATC	8 cut(s)	6, 115, 250, 372, 382, 413, 597, 615
NheI	GCTAGC	1 cut(s)	172
NlaIII	CATG	6 cut(s)	345, 392, 535, 563, 735, 804
NmuCI	GTSAC	1 cut(s)	710
NspI	RCATGY	2 cut(s)	392, 563
PagI	TCATGA	1 cut(s)	800
PceI	AGGCCT	1 cut(s)	469
PciI	ACATGT	1 cut(s)	559
PctI	GAATGC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	643
PkrI	GCNGC	3 cut(s)	484, 487, 691
PscI	ACATGT	1 cut(s)	559
PspPI	GGNCC	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	765
SatI	GCNGC	3 cut(s)	483, 486, 690
Sau3AI	GATC	8 cut(s)	6, 115, 250, 372, 382, 413, 597, 615
Sau96I	GGNCC	1 cut(s)	80
SduI	GDGCHC	3 cut(s)	61, 67, 663
SetI	ASST	8 cut(s)	178, 246, 274, 297, 334, 448, 652, 704
SfaNI	GCATC	1 cut(s)	676
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	697
SmoI	CTYRAG	1 cut(s)	697
Sse9I	AATT	4 cut(s)	461, 477, 716, 739
SseBI	AGGCCT	1 cut(s)	469
SspMI	CTAG	2 cut(s)	173, 753
StuI	AGGCCT	1 cut(s)	469
TaaI	ACNGT	3 cut(s)	74, 232, 724
TasI	AATT	4 cut(s)	461, 477, 716, 739
Tru1I	TTAA	1 cut(s)	765
Tru9I	TTAA	1 cut(s)	765
TscAI	CASTG	6 cut(s)	168, 198, 237, 382, 423, 625
TseFI	GTSAC	1 cut(s)	710
TseI	GCWGC	3 cut(s)	482, 485, 689
Tsp45I	GTSAC	1 cut(s)	710
TspDTI	ATGAA	5 cut(s)	119, 122, 340, 544, 642
TspGWI	ACGGA	2 cut(s)	118, 646
TspRI	CASTG	6 cut(s)	168, 198, 237, 382, 423, 625
VneI	GTGCAC	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	3 cut(s)	461, 716, 739
XceI	RCATGY	2 cut(s)	392, 563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	671
XmnI	GAANNNNTTC	1 cut(s)	643
XspI	CTAG	2 cut(s)	173, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.