Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Reverse (-)

43204731 .. 43207804

Gene Structure 3074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G527900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCACCCAGTTTTGACTGTACGGTTTCAAGCCTGCTTTGCGCAGAAGACAACATTTTCGATGATAACGATTTTGGGTCTGTGAGATTGGAGGAGTGTGAGGAGGCTATGTGGCCTCTTAGAAATCATCGAAACTATCATCAAAATCGTGGCTTTGATGATGAGGGTGGACTGCCATTGCAGAGTGATGAGTATTTGGCTTCAATGGTTGAAAAGGAATGCCACCACTTGCCTGGTTCTGATTACTTGATGAAGTTGCAAAGTGGAGACTTGGACCTGGGTGCTAGAAAACAGGCTCTTGATTGGATTGGAAAGGCAAATGCCCATTTCAGTTTTGGACCTCTCTGCCAATATCTATCCATAAACTACTTGGATCGCTTCCTTTCTGCCTATGAATTACCTAATGGCAAAGCTTGGACTATGCAACTGTTGGCTGTGGCTTGCTTGTCTCTTGCAGCCAAAATGGAGGAGATTGATGTTCCTCTCTCTCTAGATTTACAGGTGGCAGAGTCAAAATTTGTATTTGAGGCTAGAACAATTCAAAGGATGGAGCTTCTGGTTTTGAGCACATTAAGATGGAGAATGCAAGCAGTTACCCCTTTCTCCTTCATAGATTCTTTCCTTCTCCAGATCAATGAGGATCAAATCCCTCTCAGAGCTTCAATCTTGAGATCATCCCAACTCATTTTGACCACTGCTAAAGGAATTGACTTCTTGGAATTCAGGCCATCAGAGGTTGCAGCAGCAATAGCAATTTCTGTTGCAGGAGAAGCCAAAACATTAGACACTGAGAAAGCAATCTCTATGCTCATTCAACATGTAGACTTAGTAAAGGAGAGAGTGGTAAAGTGTGTAAATTTGATTCATGATATGTCTTTAATGAGTGGGGCCTTTAAGGATGCTAGTGGCTCTGCCCAGTCTGTGCCCCAGAGTCCAATTGGGGTCTTGGATGCTGCATGCTTCAGCTATAAAAGTGAAGAGAGCACAGTTGGGTCATGTGCAAATTCCTTCCACAATAGCTCTGATTCTAAAAGAAGGAAGCTAAACAGAGCCTGTGAGGTGGAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

357

Amino Acids

39.62

Weight (kDa)

4.95

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	822
AclWI	GGATC	2 cut(s)	381, 648
AcsI	RAATTY	4 cut(s)	515, 719, 856, 1003
AcuI	CTGAAG	1 cut(s)	946
AfaI	GTAC	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	817
AgsI	TTSAA	6 cut(s)	30, 204, 212, 542, 663, 815
AjnI	CCWGG	2 cut(s)	232, 276
AluBI	AGCT	6 cut(s)	413, 553, 659, 966, 1020, 1042
AluI	AGCT	6 cut(s)	413, 553, 659, 966, 1020, 1042
Alw21I	GWGCWC	2 cut(s)	569, 986
Alw26I	GTCTC	2 cut(s)	261, 453
AlwI	GGATC	2 cut(s)	381, 648
AlwNI	CAGNNNCTG	1 cut(s)	1053
AoxI	GGCC	3 cut(s)	113, 725, 888
ApeKI	GCWGC	4 cut(s)	455, 740, 743, 953
ApoI	RAATTY	4 cut(s)	515, 719, 856, 1003
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	3 cut(s)	274, 338, 888
AvaII	GGWCC	2 cut(s)	274, 338
BaeGI	GKGCMC	1 cut(s)	927
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	569, 986
BbvI	GCAGC	4 cut(s)	467, 752, 755, 940
BccI	CCATC	3 cut(s)	541, 570, 736
BciT130I	CCWGG	2 cut(s)	234, 278
BcoDI	GTCTC	2 cut(s)	261, 453
BfaI	CTAG	4 cut(s)	285, 491, 531, 903
BisI	GCNGC	4 cut(s)	456, 741, 744, 954
BlsI	GCNGC	4 cut(s)	457, 742, 745, 955
Bme1390I	CCNGG	2 cut(s)	234, 278
Bme18I	GGWCC	2 cut(s)	274, 338
BmgT120I	GGNCC	3 cut(s)	274, 338, 888
BmiI	GGNNCC	2 cut(s)	6, 889
BmrFI	CCNGG	2 cut(s)	234, 278
BmrI	ACTGGG	2 cut(s)	3, 910
BmsI	GCATC	2 cut(s)	889, 940
BmuI	ACTGGG	2 cut(s)	3, 910
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	611
BpuEI	CTTGAG	1 cut(s)	688
BsaJI	CCNNGG	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bse1I	ACTGG	2 cut(s)	9, 916
Bse3DI	GCAATG	1 cut(s)	176
BseBI	CCWGG	2 cut(s)	234, 278
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	4 cut(s)	552, 674, 904, 955
BseMI	GCAATG	1 cut(s)	176
BseMII	CTCAG	2 cut(s)	667, 780
BseNI	ACTGG	2 cut(s)	9, 916
BseRI	GAGGAG	3 cut(s)	107, 116, 482
BseSI	GKGCMC	1 cut(s)	927
BseXI	GCAGC	4 cut(s)	467, 752, 755, 940
BshFI	GGCC	3 cut(s)	115, 727, 890
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	2 cut(s)	569, 986
BsmAI	GTCTC	2 cut(s)	261, 453
BsmI	GAATGC	2 cut(s)	224, 588
BsnI	GGCC	3 cut(s)	115, 727, 890
Bsp1286I	GDGCHC	3 cut(s)	569, 927, 986
Bsp143I	GATC	4 cut(s)	373, 630, 640, 671
BspANI	GGCC	3 cut(s)	115, 727, 890
BspCNI	CTCAG	2 cut(s)	666, 781
BspHI	TCATGA	1 cut(s)	865
BspLI	GGNNCC	2 cut(s)	6, 889
BspPI	GGATC	2 cut(s)	381, 648
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	9, 916
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	4 cut(s)	373, 630, 640, 671
Bst2UI	CCWGG	2 cut(s)	234, 278
Bst4CI	ACNGT	4 cut(s)	20, 25, 429, 988
Bst6I	CTCTTC	1 cut(s)	972
BstC8I	GCNNGC	4 cut(s)	35, 442, 588, 958
BstDEI	CTNAG	4 cut(s)	119, 653, 789, 826
BstF5I	GGATG	4 cut(s)	552, 674, 904, 955
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	4 cut(s)	376, 633, 643, 674
BstMAI	GTCTC	2 cut(s)	261, 453
BstMBI	GATC	4 cut(s)	373, 630, 640, 671
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 749, 770
BstNI	CCWGG	2 cut(s)	234, 278
BstNSI	RCATGY	2 cut(s)	821, 960
BstSCI	CCNGG	2 cut(s)	232, 276
BstSLI	GKGCMC	1 cut(s)	927
BstV1I	GCAGC	4 cut(s)	467, 752, 755, 940
BstV2I	GAAGAC	1 cut(s)	54
BstXI	CCANNNNNNTGG	1 cut(s)	233
BsuRI	GGCC	3 cut(s)	115, 727, 890
BtsCI	GGATG	4 cut(s)	552, 674, 904, 955
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	2 cut(s)	693, 786
Cac8I	GCNNGC	4 cut(s)	35, 442, 588, 958
CaiI	CAGNNNCTG	1 cut(s)	1053
CciI	TCATGA	1 cut(s)	865
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	3 cut(s)	274, 338, 888
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	4 cut(s)	818, 866, 957, 996
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	4 cut(s)	119, 653, 789, 826
DpnI	GATC	4 cut(s)	375, 632, 642, 673
DpnII	GATC	4 cut(s)	373, 630, 640, 671
Eam1104I	CTCTTC	1 cut(s)	972
EarI	CTCTTC	1 cut(s)	972
Eco47I	GGWCC	2 cut(s)	274, 338
Eco57I	CTGAAG	1 cut(s)	946
EcoO109I	RGGNCCY	1 cut(s)	888
EcoRI	GAATTC	1 cut(s)	719
EcoRII	CCWGG	2 cut(s)	232, 276
FaeI	CATG	4 cut(s)	821, 869, 960, 999
FatI	CATG	4 cut(s)	817, 865, 956, 995
FblI	GTMKAC	1 cut(s)	822
Fnu4HI	GCNGC	4 cut(s)	456, 741, 744, 954
FokI	GGATG	4 cut(s)	559, 661, 911, 962
Fsp4HI	GCNGC	4 cut(s)	456, 741, 744, 954
FspBI	CTAG	4 cut(s)	285, 491, 531, 903
FspI	TGCGCA	1 cut(s)	43
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	4 cut(s)	456, 741, 744, 954
GsuI	CTGGAG	1 cut(s)	611
HaeIII	GGCC	3 cut(s)	115, 727, 890
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	4 cut(s)	821, 869, 960, 999
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	5 cut(s)	509, 614, 862, 931, 1025
Hpy166II	GTNNAC	2 cut(s)	170, 823
Hpy188I	TCNGA	4 cut(s)	241, 656, 733, 1024
Hpy188III	TCNNGA	5 cut(s)	299, 491, 628, 667, 866
Hpy8I	GTNNAC	2 cut(s)	170, 823
HpyAV	CCTTC	4 cut(s)	616, 632, 1018, 1029
HpyCH4III	ACNGT	4 cut(s)	20, 25, 429, 988
HpyCH4V	TGCA	9 cut(s)	181, 259, 424, 455, 586, 740, 764, 956, 1001
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 749, 770
HpyF3I	CTNAG	4 cut(s)	119, 653, 789, 826
Hsp92II	CATG	4 cut(s)	821, 869, 960, 999
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	4 cut(s)	373, 630, 640, 671
LmnI	GCTCC	1 cut(s)	550
Lsp1109I	GCAGC	4 cut(s)	467, 752, 755, 940
LweI	GCATC	2 cut(s)	889, 940
MaeI	CTAG	4 cut(s)	285, 491, 531, 903
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	4 cut(s)	375, 632, 642, 673
MboI	GATC	4 cut(s)	373, 630, 640, 671
MboII	GAAGA	2 cut(s)	59, 989
MfeI	CAATTG	1 cut(s)	936
MhlI	GDGCHC	3 cut(s)	569, 927, 986
MluCI	AATT	9 cut(s)	395, 515, 537, 705, 719, 753, 856, 936, 1003
MlyI	GAGTC	2 cut(s)	518, 940
MseI	TTAA	3 cut(s)	572, 878, 894
MslI	CAYNNNNRTG	1 cut(s)	574
MspR9I	CCNGG	2 cut(s)	234, 278
MunI	CAATTG	1 cut(s)	936
Mva1269I	GAATGC	2 cut(s)	224, 588
MvaI	CCWGG	2 cut(s)	234, 278
MwoI	GCNNNNNNNGC	3 cut(s)	39, 749, 770
NdeII	GATC	4 cut(s)	373, 630, 640, 671
NlaIII	CATG	4 cut(s)	821, 869, 960, 999
NlaIV	GGNNCC	2 cut(s)	6, 889
NsbI	TGCGCA	1 cut(s)	43
NspI	RCATGY	2 cut(s)	821, 960
PaeI	GCATGC	1 cut(s)	960
PagI	TCATGA	1 cut(s)	865
PciI	ACATGT	1 cut(s)	817
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	2 cut(s)	224, 588
PfeI	GAWTC	3 cut(s)	614, 862, 1025
PkrI	GCNGC	4 cut(s)	457, 742, 745, 955
PleI	GAGTC	2 cut(s)	517, 939
PpsI	GAGTC	2 cut(s)	517, 939
PscI	ACATGT	1 cut(s)	817
Psp6I	CCWGG	2 cut(s)	232, 276
PspGI	CCWGG	2 cut(s)	232, 276
PspN4I	GGNNCC	2 cut(s)	6, 889
PspPI	GGNCC	3 cut(s)	274, 338, 888
PstNI	CAGNNNCTG	1 cut(s)	1053
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	574
SaqAI	TTAA	3 cut(s)	572, 878, 894
SatI	GCNGC	4 cut(s)	456, 741, 744, 954
Sau3AI	GATC	4 cut(s)	373, 630, 640, 671
Sau96I	GGNCC	3 cut(s)	274, 338, 888
SchI	GAGTC	2 cut(s)	518, 940
ScrFI	CCNGG	2 cut(s)	234, 278
SduI	GDGCHC	3 cut(s)	569, 927, 986
SfaNI	GCATC	2 cut(s)	889, 940
SinI	GGWCC	2 cut(s)	274, 338
SmiMI	CAYNNNNRTG	1 cut(s)	574
SmlI	CTYRAG	1 cut(s)	667
SmoI	CTYRAG	1 cut(s)	667
SphI	GCATGC	1 cut(s)	960
Sse9I	AATT	9 cut(s)	395, 515, 537, 705, 719, 753, 856, 936, 1003
SspMI	CTAG	4 cut(s)	285, 491, 531, 903
StyD4I	CCNGG	2 cut(s)	232, 276
TaaI	ACNGT	4 cut(s)	20, 25, 429, 988
TaqI	TCGA	2 cut(s)	60, 130
TasI	AATT	9 cut(s)	395, 515, 537, 705, 719, 753, 856, 936, 1003
TfiI	GAWTC	3 cut(s)	614, 862, 1025
Tru1I	TTAA	3 cut(s)	572, 878, 894
Tru9I	TTAA	3 cut(s)	572, 878, 894
TscAI	CASTG	2 cut(s)	700, 793
TseI	GCWGC	4 cut(s)	455, 740, 743, 953
TspDTI	ATGAA	4 cut(s)	266, 408, 598, 854
TspRI	CASTG	2 cut(s)	700, 793
VpaK11BI	GGWCC	2 cut(s)	274, 338
XapI	RAATTY	4 cut(s)	515, 719, 856, 1003
XbaI	TCTAGA	1 cut(s)	490
XceI	RCATGY	2 cut(s)	821, 960
XcmI	CCANNNNNNNNNTGG	4 cut(s)	230, 332, 367, 935
XmiI	GTMKAC	1 cut(s)	822
XspI	CTAG	4 cut(s)	285, 491, 531, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.